data_4G6Z
#
_model_server_result.job_id            mEfM61Jrao_GGQtbvn1F5Q 
_model_server_result.datetime_utc      '2024-12-21 16:16:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4g6z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    4G6Z 
#
_exptl.entry_id    4G6Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4G6Z 
_cell.length_a            88.95 
_cell.length_b            88.95 
_cell.length_c            132.27 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4G6Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PRO 120 A PRO 99 1_555 A N OCS 121 A OCS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? 
covale ? covale2 A C OCS 121 A OCS 100 1_555 A N TYR 122 A TYR 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
metalc ? metalc1 A O ILE 364 A ILE 343 1_555 D NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.007 ? 
metalc ? metalc2 A O GLU 365 A GLU 344 1_555 D NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? 
metalc ? metalc3 A O GLY 367 A GLY 346 1_555 D NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? 
metalc ? metalc4 D NA NA . A NA 503 1_555 F O HOH . A HOH 787 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? 
metalc ? metalc5 D NA NA . A NA 503 1_555 F O HOH . A HOH 788 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 237 n n 
C1 H11 MPD sing 238 n n 
C1 H12 MPD sing 239 n n 
C1 H13 MPD sing 240 n n 
C2 O2 MPD sing 241 n n 
C2 CM MPD sing 242 n n 
C2 C3 MPD sing 243 n n 
O2 HO2 MPD sing 244 n n 
CM HM1 MPD sing 245 n n 
CM HM2 MPD sing 246 n n 
CM HM3 MPD sing 247 n n 
C3 C4 MPD sing 248 n n 
C3 H31 MPD sing 249 n n 
C3 H32 MPD sing 250 n n 
C4 O4 MPD sing 251 n n 
C4 C5 MPD sing 252 n n 
C4 H4 MPD sing 253 n n 
O4 HO4 MPD sing 254 n n 
C5 H51 MPD sing 255 n n 
C5 H52 MPD sing 256 n n 
C5 H53 MPD sing 257 n n 
#
_atom_sites.entry_id                     4G6Z 
_atom_sites.fract_transf_matrix[1][1]    0.011242 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011242 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00756 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GLU A 1 501 501 GLU GLU . 
C 3 MPD A 1 502 1 MPD MPD . 
D 4 NA A 1 503 2 NA NA . 
E 5 CL A 1 504 3 CL CL . 
F 6 HOH A 1 601 1 HOH HOH . 
F 6 HOH A 2 602 2 HOH HOH . 
F 6 HOH A 3 603 3 HOH HOH . 
F 6 HOH A 4 604 4 HOH HOH . 
F 6 HOH A 5 605 5 HOH HOH . 
F 6 HOH A 6 606 6 HOH HOH . 
F 6 HOH A 7 607 7 HOH HOH . 
F 6 HOH A 8 608 8 HOH HOH . 
F 6 HOH A 9 609 9 HOH HOH . 
F 6 HOH A 10 610 10 HOH HOH . 
F 6 HOH A 11 611 11 HOH HOH . 
F 6 HOH A 12 612 12 HOH HOH . 
F 6 HOH A 13 613 13 HOH HOH . 
F 6 HOH A 14 614 14 HOH HOH . 
F 6 HOH A 15 615 15 HOH HOH . 
F 6 HOH A 16 616 16 HOH HOH . 
F 6 HOH A 17 617 17 HOH HOH . 
F 6 HOH A 18 618 18 HOH HOH . 
F 6 HOH A 19 619 19 HOH HOH . 
F 6 HOH A 20 620 20 HOH HOH . 
F 6 HOH A 21 621 21 HOH HOH . 
F 6 HOH A 22 622 22 HOH HOH . 
F 6 HOH A 23 623 23 HOH HOH . 
F 6 HOH A 24 624 24 HOH HOH . 
F 6 HOH A 25 625 25 HOH HOH . 
F 6 HOH A 26 626 26 HOH HOH . 
F 6 HOH A 27 627 27 HOH HOH . 
F 6 HOH A 28 628 28 HOH HOH . 
F 6 HOH A 29 629 29 HOH HOH . 
F 6 HOH A 30 630 30 HOH HOH . 
F 6 HOH A 31 631 31 HOH HOH . 
F 6 HOH A 32 632 32 HOH HOH . 
F 6 HOH A 33 633 33 HOH HOH . 
F 6 HOH A 34 634 34 HOH HOH . 
F 6 HOH A 35 635 35 HOH HOH . 
F 6 HOH A 36 636 36 HOH HOH . 
F 6 HOH A 37 637 37 HOH HOH . 
F 6 HOH A 38 638 38 HOH HOH . 
F 6 HOH A 39 639 39 HOH HOH . 
F 6 HOH A 40 640 40 HOH HOH . 
F 6 HOH A 41 641 41 HOH HOH . 
F 6 HOH A 42 642 42 HOH HOH . 
F 6 HOH A 43 643 43 HOH HOH . 
F 6 HOH A 44 644 44 HOH HOH . 
F 6 HOH A 45 645 45 HOH HOH . 
F 6 HOH A 46 646 46 HOH HOH . 
F 6 HOH A 47 647 47 HOH HOH . 
F 6 HOH A 48 648 48 HOH HOH . 
F 6 HOH A 49 649 49 HOH HOH . 
F 6 HOH A 50 650 50 HOH HOH . 
F 6 HOH A 51 651 51 HOH HOH . 
F 6 HOH A 52 652 52 HOH HOH . 
F 6 HOH A 53 653 53 HOH HOH . 
F 6 HOH A 54 654 54 HOH HOH . 
F 6 HOH A 55 655 55 HOH HOH . 
F 6 HOH A 56 656 56 HOH HOH . 
F 6 HOH A 57 657 57 HOH HOH . 
F 6 HOH A 58 658 58 HOH HOH . 
F 6 HOH A 59 659 59 HOH HOH . 
F 6 HOH A 60 660 60 HOH HOH . 
F 6 HOH A 61 661 61 HOH HOH . 
F 6 HOH A 62 662 62 HOH HOH . 
F 6 HOH A 63 663 63 HOH HOH . 
F 6 HOH A 64 664 64 HOH HOH . 
F 6 HOH A 65 665 65 HOH HOH . 
F 6 HOH A 66 666 66 HOH HOH . 
F 6 HOH A 67 667 67 HOH HOH . 
F 6 HOH A 68 668 68 HOH HOH . 
F 6 HOH A 69 669 69 HOH HOH . 
F 6 HOH A 70 670 70 HOH HOH . 
F 6 HOH A 71 671 71 HOH HOH . 
F 6 HOH A 72 672 72 HOH HOH . 
F 6 HOH A 73 673 73 HOH HOH . 
F 6 HOH A 74 674 74 HOH HOH . 
F 6 HOH A 75 675 75 HOH HOH . 
F 6 HOH A 76 676 76 HOH HOH . 
F 6 HOH A 77 677 77 HOH HOH . 
F 6 HOH A 78 678 78 HOH HOH . 
F 6 HOH A 79 679 79 HOH HOH . 
F 6 HOH A 80 680 80 HOH HOH . 
F 6 HOH A 81 681 81 HOH HOH . 
F 6 HOH A 82 682 82 HOH HOH . 
F 6 HOH A 83 683 83 HOH HOH . 
F 6 HOH A 84 684 84 HOH HOH . 
F 6 HOH A 85 685 85 HOH HOH . 
F 6 HOH A 86 686 86 HOH HOH . 
F 6 HOH A 87 687 87 HOH HOH . 
F 6 HOH A 88 688 88 HOH HOH . 
F 6 HOH A 89 689 89 HOH HOH . 
F 6 HOH A 90 690 90 HOH HOH . 
F 6 HOH A 91 691 91 HOH HOH . 
F 6 HOH A 92 692 92 HOH HOH . 
F 6 HOH A 93 693 93 HOH HOH . 
F 6 HOH A 94 694 94 HOH HOH . 
F 6 HOH A 95 695 95 HOH HOH . 
F 6 HOH A 96 696 96 HOH HOH . 
F 6 HOH A 97 697 97 HOH HOH . 
F 6 HOH A 98 698 98 HOH HOH . 
F 6 HOH A 99 699 99 HOH HOH . 
F 6 HOH A 100 700 100 HOH HOH . 
F 6 HOH A 101 701 101 HOH HOH . 
F 6 HOH A 102 702 102 HOH HOH . 
F 6 HOH A 103 703 103 HOH HOH . 
F 6 HOH A 104 704 104 HOH HOH . 
F 6 HOH A 105 705 105 HOH HOH . 
F 6 HOH A 106 706 106 HOH HOH . 
F 6 HOH A 107 707 107 HOH HOH . 
F 6 HOH A 108 708 108 HOH HOH . 
F 6 HOH A 109 709 109 HOH HOH . 
F 6 HOH A 110 710 110 HOH HOH . 
F 6 HOH A 111 711 111 HOH HOH . 
F 6 HOH A 112 712 112 HOH HOH . 
F 6 HOH A 113 713 113 HOH HOH . 
F 6 HOH A 114 714 114 HOH HOH . 
F 6 HOH A 115 715 115 HOH HOH . 
F 6 HOH A 116 716 116 HOH HOH . 
F 6 HOH A 117 717 117 HOH HOH . 
F 6 HOH A 118 718 118 HOH HOH . 
F 6 HOH A 119 719 119 HOH HOH . 
F 6 HOH A 120 720 120 HOH HOH . 
F 6 HOH A 121 721 121 HOH HOH . 
F 6 HOH A 122 722 122 HOH HOH . 
F 6 HOH A 123 723 123 HOH HOH . 
F 6 HOH A 124 724 124 HOH HOH . 
F 6 HOH A 125 725 125 HOH HOH . 
F 6 HOH A 126 726 126 HOH HOH . 
F 6 HOH A 127 727 127 HOH HOH . 
F 6 HOH A 128 728 128 HOH HOH . 
F 6 HOH A 129 729 129 HOH HOH . 
F 6 HOH A 130 730 130 HOH HOH . 
F 6 HOH A 131 731 131 HOH HOH . 
F 6 HOH A 132 732 132 HOH HOH . 
F 6 HOH A 133 733 133 HOH HOH . 
F 6 HOH A 134 734 134 HOH HOH . 
F 6 HOH A 135 735 135 HOH HOH . 
F 6 HOH A 136 736 136 HOH HOH . 
F 6 HOH A 137 737 137 HOH HOH . 
F 6 HOH A 138 738 138 HOH HOH . 
F 6 HOH A 139 739 139 HOH HOH . 
F 6 HOH A 140 740 140 HOH HOH . 
F 6 HOH A 141 741 141 HOH HOH . 
F 6 HOH A 142 742 142 HOH HOH . 
F 6 HOH A 143 743 143 HOH HOH . 
F 6 HOH A 144 744 144 HOH HOH . 
F 6 HOH A 145 745 145 HOH HOH . 
F 6 HOH A 146 746 146 HOH HOH . 
F 6 HOH A 147 747 147 HOH HOH . 
F 6 HOH A 148 748 148 HOH HOH . 
F 6 HOH A 149 749 149 HOH HOH . 
F 6 HOH A 150 750 150 HOH HOH . 
F 6 HOH A 151 751 151 HOH HOH . 
F 6 HOH A 152 752 152 HOH HOH . 
F 6 HOH A 153 753 153 HOH HOH . 
F 6 HOH A 154 754 154 HOH HOH . 
F 6 HOH A 155 755 155 HOH HOH . 
F 6 HOH A 156 756 156 HOH HOH . 
F 6 HOH A 157 757 157 HOH HOH . 
F 6 HOH A 158 758 158 HOH HOH . 
F 6 HOH A 159 759 159 HOH HOH . 
F 6 HOH A 160 760 160 HOH HOH . 
F 6 HOH A 161 761 161 HOH HOH . 
F 6 HOH A 162 762 162 HOH HOH . 
F 6 HOH A 163 763 163 HOH HOH . 
F 6 HOH A 164 764 164 HOH HOH . 
F 6 HOH A 165 765 165 HOH HOH . 
F 6 HOH A 166 766 166 HOH HOH . 
F 6 HOH A 167 767 167 HOH HOH . 
F 6 HOH A 168 768 168 HOH HOH . 
F 6 HOH A 169 769 169 HOH HOH . 
F 6 HOH A 170 770 170 HOH HOH . 
F 6 HOH A 171 771 171 HOH HOH . 
F 6 HOH A 172 772 172 HOH HOH . 
F 6 HOH A 173 773 173 HOH HOH . 
F 6 HOH A 174 774 174 HOH HOH . 
F 6 HOH A 175 775 175 HOH HOH . 
F 6 HOH A 176 776 176 HOH HOH . 
F 6 HOH A 177 777 177 HOH HOH . 
F 6 HOH A 178 778 178 HOH HOH . 
F 6 HOH A 179 779 179 HOH HOH . 
F 6 HOH A 180 780 180 HOH HOH . 
F 6 HOH A 181 781 181 HOH HOH . 
F 6 HOH A 182 782 182 HOH HOH . 
F 6 HOH A 183 783 183 HOH HOH . 
F 6 HOH A 184 784 184 HOH HOH . 
F 6 HOH A 185 785 185 HOH HOH . 
F 6 HOH A 186 786 186 HOH HOH . 
F 6 HOH A 187 787 187 HOH HOH . 
F 6 HOH A 188 788 188 HOH HOH . 
F 6 HOH A 189 789 189 HOH HOH . 
F 6 HOH A 190 790 190 HOH HOH . 
F 6 HOH A 191 791 191 HOH HOH . 
F 6 HOH A 192 792 192 HOH HOH . 
F 6 HOH A 193 793 193 HOH HOH . 
F 6 HOH A 194 794 194 HOH HOH . 
F 6 HOH A 195 795 195 HOH HOH . 
F 6 HOH A 196 796 196 HOH HOH . 
F 6 HOH A 197 797 197 HOH HOH . 
F 6 HOH A 198 798 198 HOH HOH . 
F 6 HOH A 199 799 199 HOH HOH . 
F 6 HOH A 200 800 200 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . C 3 13.781 22.079 15.429 1 45.93 ? C1 MPD 502 A 1 
HETATM 2 C C2 MPD . . . C 3 14.818 23.172 15.182 1 45.9 ? C2 MPD 502 A 1 
HETATM 3 O O2 MPD . . . C 3 15.274 23.101 13.826 1 44.04 ? O2 MPD 502 A 1 
HETATM 4 C CM MPD . . . C 3 14.25 24.574 15.332 1 42.71 ? CM MPD 502 A 1 
HETATM 5 C C3 MPD . . . C 3 15.958 23.089 16.194 1 49.42 ? C3 MPD 502 A 1 
HETATM 6 C C4 MPD . . . C 3 16.852 21.862 16.119 1 52.08 ? C4 MPD 502 A 1 
HETATM 7 O O4 MPD . . . C 3 17.679 21.92 14.96 1 52.98 ? O4 MPD 502 A 1 
HETATM 8 C C5 MPD . . . C 3 17.756 21.845 17.343 1 51.71 ? C5 MPD 502 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           8 
#