data_4G70 # _model_server_result.job_id eFXUGjEURGsyYXQCsuVJ6A _model_server_result.datetime_utc '2024-10-19 05:28:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4g70 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":612}' # _entry.id 4G70 # _exptl.entry_id 4G70 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 127.39 _cell.angle_gamma 90 _cell.entry_id 4G70 _cell.length_a 143.48 _cell.length_b 98.36 _cell.length_c 94.78 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4G70 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 H N N ? 8 I N N ? 8 J N N ? 8 K N N ? 8 L N N ? 8 M N N ? 8 N N N ? 8 O N N ? 8 P N N ? 8 Q N N ? 8 R N N ? 8 T N N ? 8 U N N ? 8 V N N ? 8 W N N ? 8 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 79 A HIS 72 1_555 D FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc2 A ND1 HIS 240 A HIS 233 1_555 F CU CU . A CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.776 ? metalc ? metalc3 A NE2 HIS 289 A HIS 282 1_555 F CU CU . A CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc4 A NE2 HIS 290 A HIS 283 1_555 F CU CU . A CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc5 A NE2 HIS 391 A HIS 384 1_555 E FE HAS . A HAS 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc6 A NE2 HIS 393 A HIS 386 1_555 D FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc7 E FE HAS . A HAS 602 1_555 G O1 PER . A PER 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc8 F CU CU . A CU 603 1_555 G O1 PER . A PER 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc9 F CU CU . A CU 603 1_555 G O2 PER . A PER 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc10 B ND1 HIS 114 B HIS 114 1_555 S CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc11 B SG CYS 149 B CYS 149 1_555 S CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc12 B SG CYS 149 B CYS 149 1_555 S CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc13 B O GLN 151 B GLN 151 1_555 S CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc14 B SG CYS 153 B CYS 153 1_555 S CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc15 B SG CYS 153 B CYS 153 1_555 S CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc16 B ND1 HIS 157 B HIS 157 1_555 S CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc17 B SD MET 160 B MET 160 1_555 S CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 456 n n C10 C9 OLC doub 457 n n C10 C11 OLC sing 458 n n C9 C8 OLC sing 459 n n C17 C16 OLC sing 460 z n C11 C12 OLC sing 461 n n C8 C7 OLC sing 462 n n C24 C22 OLC sing 463 n n C24 O25 OLC sing 464 n n C16 C15 OLC sing 465 n n C12 C13 OLC sing 466 n n C7 C6 OLC sing 467 n n C15 C14 OLC sing 468 n n C13 C14 OLC sing 469 n n C6 C5 OLC sing 470 n n C5 C4 OLC sing 471 n n C4 C3 OLC sing 472 n n C3 C2 OLC sing 473 n n C2 C1 OLC sing 474 n n C21 C22 OLC sing 475 n n C21 O20 OLC sing 476 n n C1 O19 OLC doub 477 n n C1 O20 OLC sing 478 n n C22 O23 OLC sing 479 n n C18 H18 OLC sing 480 n n C18 H18A OLC sing 481 n n C18 H18B OLC sing 482 n n C10 H10 OLC sing 483 n n C9 H9 OLC sing 484 n n C17 H17 OLC sing 485 n n C17 H17A OLC sing 486 n n C11 H11 OLC sing 487 n n C11 H11A OLC sing 488 n n C8 H8 OLC sing 489 n n C8 H8A OLC sing 490 n n C24 H24 OLC sing 491 n n C24 H24A OLC sing 492 n n C16 H16 OLC sing 493 n n C16 H16A OLC sing 494 n n C12 H12 OLC sing 495 n n C12 H12A OLC sing 496 n n C7 H7 OLC sing 497 n n C7 H7A OLC sing 498 n n C15 H15 OLC sing 499 n n C15 H15A OLC sing 500 n n C13 H13 OLC sing 501 n n C13 H13A OLC sing 502 n n C6 H6 OLC sing 503 n n C6 H6A OLC sing 504 n n C14 H14 OLC sing 505 n n C14 H14A OLC sing 506 n n C5 H5 OLC sing 507 n n C5 H5A OLC sing 508 n n C4 H4 OLC sing 509 n n C4 H4A OLC sing 510 n n C3 H3 OLC sing 511 n n C3 H3A OLC sing 512 n n C2 H2 OLC sing 513 n n C2 H2A OLC sing 514 n n C21 H21 OLC sing 515 n n C21 H21A OLC sing 516 n n C22 H22 OLC sing 517 n n O25 HO25 OLC sing 518 n n O23 HO23 OLC sing 519 n n # _atom_sites.entry_id 4G70 _atom_sites.fract_transf_matrix[1][1] 0.00697 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005327 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010167 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013279 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 HEM A 1 601 800 HEM HEM . E 5 HAS A 1 602 801 HAS HAS . F 6 CU A 1 603 802 CU CU . G 7 PER A 1 604 804 PER PRX . H 8 OLC A 1 605 3 OLC OLC . I 8 OLC A 1 606 4 OLC OLC . J 8 OLC A 1 607 8 OLC OLC . K 8 OLC A 1 608 9 OLC OLC . L 8 OLC A 1 609 10 OLC OLC . M 8 OLC A 1 610 11 OLC OLC . N 8 OLC A 1 611 12 OLC OLC . O 8 OLC A 1 612 13 OLC OLC . P 8 OLC A 1 613 14 OLC OLC . Q 8 OLC A 1 614 15 OLC OLC . R 8 OLC A 1 615 16 OLC OLC . S 9 CUA B 1 201 802 CUA CUA . T 8 OLC B 1 202 5 OLC OLC . U 8 OLC B 1 203 6 OLC OLC . V 8 OLC B 1 204 7 OLC OLC . W 8 OLC C 1 101 1 OLC OLC . X 8 OLC C 1 102 2 OLC OLC . Y 10 HOH A 1 701 17 HOH HOH . Y 10 HOH A 2 702 18 HOH HOH . Y 10 HOH A 3 703 28 HOH HOH . Y 10 HOH A 4 704 31 HOH HOH . Y 10 HOH A 5 705 37 HOH HOH . Y 10 HOH A 6 706 39 HOH HOH . Y 10 HOH A 7 707 43 HOH HOH . Y 10 HOH A 8 708 52 HOH HOH . Y 10 HOH A 9 709 53 HOH HOH . Y 10 HOH A 10 710 56 HOH HOH . Y 10 HOH A 11 711 67 HOH HOH . Y 10 HOH A 12 712 71 HOH HOH . Y 10 HOH A 13 713 72 HOH HOH . Y 10 HOH A 14 714 73 HOH HOH . Y 10 HOH A 15 715 74 HOH HOH . Y 10 HOH A 16 716 78 HOH HOH . Y 10 HOH A 17 717 80 HOH HOH . Y 10 HOH A 18 718 85 HOH HOH . Y 10 HOH A 19 719 87 HOH HOH . Y 10 HOH A 20 720 88 HOH HOH . Y 10 HOH A 21 721 91 HOH HOH . Y 10 HOH A 22 722 92 HOH HOH . Y 10 HOH A 23 723 93 HOH HOH . Y 10 HOH A 24 724 96 HOH HOH . Y 10 HOH A 25 725 97 HOH HOH . Y 10 HOH A 26 726 100 HOH HOH . Y 10 HOH A 27 727 102 HOH HOH . Y 10 HOH A 28 728 103 HOH HOH . Y 10 HOH A 29 729 104 HOH HOH . Y 10 HOH A 30 730 105 HOH HOH . Y 10 HOH A 31 731 106 HOH HOH . Y 10 HOH A 32 732 109 HOH HOH . Y 10 HOH A 33 733 110 HOH HOH . Y 10 HOH A 34 734 111 HOH HOH . Y 10 HOH A 35 735 113 HOH HOH . Y 10 HOH A 36 736 114 HOH HOH . Y 10 HOH A 37 737 117 HOH HOH . Y 10 HOH A 38 738 120 HOH HOH . Y 10 HOH A 39 739 122 HOH HOH . Y 10 HOH A 40 740 126 HOH HOH . Y 10 HOH A 41 741 128 HOH HOH . Y 10 HOH A 42 742 129 HOH HOH . Y 10 HOH A 43 743 131 HOH HOH . Y 10 HOH A 44 744 135 HOH HOH . Y 10 HOH A 45 745 137 HOH HOH . Y 10 HOH A 46 746 143 HOH HOH . Y 10 HOH A 47 747 144 HOH HOH . Y 10 HOH A 48 748 145 HOH HOH . Y 10 HOH A 49 749 146 HOH HOH . Y 10 HOH A 50 750 154 HOH HOH . Y 10 HOH A 51 751 159 HOH HOH . Y 10 HOH A 52 752 160 HOH HOH . Y 10 HOH A 53 753 161 HOH HOH . Y 10 HOH A 54 754 162 HOH HOH . Y 10 HOH A 55 755 164 HOH HOH . Y 10 HOH A 56 756 165 HOH HOH . Y 10 HOH A 57 757 166 HOH HOH . Y 10 HOH A 58 758 168 HOH HOH . Y 10 HOH A 59 759 169 HOH HOH . Y 10 HOH A 60 760 170 HOH HOH . Y 10 HOH A 61 761 171 HOH HOH . Y 10 HOH A 62 762 181 HOH HOH . Y 10 HOH A 63 763 183 HOH HOH . Y 10 HOH A 64 764 186 HOH HOH . Y 10 HOH A 65 765 197 HOH HOH . Y 10 HOH A 66 766 198 HOH HOH . Y 10 HOH A 67 767 200 HOH HOH . Y 10 HOH A 68 768 201 HOH HOH . Y 10 HOH A 69 769 202 HOH HOH . Y 10 HOH A 70 770 205 HOH HOH . Y 10 HOH A 71 771 207 HOH HOH . Z 10 HOH B 1 301 25 HOH HOH . Z 10 HOH B 2 302 35 HOH HOH . Z 10 HOH B 3 303 36 HOH HOH . Z 10 HOH B 4 304 48 HOH HOH . Z 10 HOH B 5 305 49 HOH HOH . Z 10 HOH B 6 306 50 HOH HOH . Z 10 HOH B 7 307 54 HOH HOH . Z 10 HOH B 8 308 55 HOH HOH . Z 10 HOH B 9 309 62 HOH HOH . Z 10 HOH B 10 310 65 HOH HOH . Z 10 HOH B 11 311 66 HOH HOH . Z 10 HOH B 12 312 77 HOH HOH . Z 10 HOH B 13 313 81 HOH HOH . Z 10 HOH B 14 314 86 HOH HOH . Z 10 HOH B 15 315 98 HOH HOH . Z 10 HOH B 16 316 99 HOH HOH . Z 10 HOH B 17 317 101 HOH HOH . Z 10 HOH B 18 318 107 HOH HOH . Z 10 HOH B 19 319 108 HOH HOH . Z 10 HOH B 20 320 118 HOH HOH . Z 10 HOH B 21 321 119 HOH HOH . Z 10 HOH B 22 322 121 HOH HOH . Z 10 HOH B 23 323 138 HOH HOH . Z 10 HOH B 24 324 140 HOH HOH . Z 10 HOH B 25 325 142 HOH HOH . Z 10 HOH B 26 326 147 HOH HOH . Z 10 HOH B 27 327 149 HOH HOH . Z 10 HOH B 28 328 151 HOH HOH . Z 10 HOH B 29 329 152 HOH HOH . Z 10 HOH B 30 330 155 HOH HOH . Z 10 HOH B 31 331 156 HOH HOH . Z 10 HOH B 32 332 172 HOH HOH . Z 10 HOH B 33 333 175 HOH HOH . Z 10 HOH B 34 334 176 HOH HOH . Z 10 HOH B 35 335 180 HOH HOH . Z 10 HOH B 36 336 184 HOH HOH . Z 10 HOH B 37 337 188 HOH HOH . Z 10 HOH B 38 338 189 HOH HOH . Z 10 HOH B 39 339 199 HOH HOH . Z 10 HOH B 40 340 203 HOH HOH . Z 10 HOH B 41 341 204 HOH HOH . Z 10 HOH B 42 342 206 HOH HOH . Z 10 HOH B 43 343 208 HOH HOH . Z 10 HOH B 44 344 209 HOH HOH . AA 10 HOH C 1 201 21 HOH HOH . AA 10 HOH C 2 202 24 HOH HOH . AA 10 HOH C 3 203 46 HOH HOH . AA 10 HOH C 4 204 75 HOH HOH . AA 10 HOH C 5 205 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 OLC . . . O 8 -1.668 -26.344 33.357 1 56.97 ? C7 OLC 612 A 1 HETATM 2 C C6 OLC . . . O 8 -2.794 -26.358 34.351 1 55.11 ? C6 OLC 612 A 1 HETATM 3 C C5 OLC . . . O 8 -4.096 -26.704 33.666 1 53.73 ? C5 OLC 612 A 1 HETATM 4 C C4 OLC . . . O 8 -4.945 -27.485 34.631 1 55.48 ? C4 OLC 612 A 1 HETATM 5 C C3 OLC . . . O 8 -6.386 -27.053 34.655 1 54.63 ? C3 OLC 612 A 1 HETATM 6 C C2 OLC . . . O 8 -6.567 -26.717 36.108 1 57.6 ? C2 OLC 612 A 1 HETATM 7 C C1 OLC . . . O 8 -7.936 -26.196 36.393 1 61.16 ? C1 OLC 612 A 1 HETATM 8 O O19 OLC . . . O 8 -8.155 -25.296 37.185 1 62.23 ? O19 OLC 612 A 1 HETATM 9 O O20 OLC . . . O 8 -8.847 -26.886 35.656 1 64.64 ? O20 OLC 612 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #