data_4G71 # _model_server_result.job_id wzVSHQeb3-zPoTuJyB-5qA _model_server_result.datetime_utc '2024-12-08 23:46:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4g71 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":602}' # _entry.id 4G71 # _exptl.entry_id 4G71 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 127.81 _cell.angle_gamma 90 _cell.entry_id 4G71 _cell.length_a 144.44 _cell.length_b 98.36 _cell.length_c 94.84 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4G71 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 79 A HIS 72 1_555 E FE HEM . A HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc2 A NE2 HIS 289 A HIS 282 1_555 D CU CUB . A CUB 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc3 A NE2 HIS 290 A HIS 283 1_555 D CU CUB . A CUB 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc4 A NE2 HIS 391 A HIS 384 1_555 F FE HAS . A HAS 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc5 A NE2 HIS 393 A HIS 386 1_555 E FE HEM . A HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc6 F FE HAS . A HAS 603 1_555 G O1 PER . A PER 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc7 B ND1 HIS 114 B HIS 114 1_555 S CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc8 B SG CYS 149 B CYS 149 1_555 S CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc9 B SG CYS 149 B CYS 149 1_555 S CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc10 B O GLN 151 B GLN 151 1_555 S CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc11 B SG CYS 153 B CYS 153 1_555 S CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc12 B SG CYS 153 B CYS 153 1_555 S CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc13 B ND1 HIS 157 B HIS 157 1_555 S CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc14 B SD MET 160 B MET 160 1_555 S CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 287 n n CHA C4D HEM doub 288 n n CHA HHA HEM sing 289 n n CHB C4A HEM sing 290 n n CHB C1B HEM doub 291 n n CHB HHB HEM sing 292 n n CHC C4B HEM sing 293 n n CHC C1C HEM doub 294 n n CHC HHC HEM sing 295 n n CHD C4C HEM doub 296 n n CHD C1D HEM sing 297 n n CHD HHD HEM sing 298 n n C1A C2A HEM doub 299 n y C1A NA HEM sing 300 n y C2A C3A HEM sing 301 n y C2A CAA HEM sing 302 n n C3A C4A HEM doub 303 n y C3A CMA HEM sing 304 n n C4A NA HEM sing 305 n y CMA HMA HEM sing 306 n n CMA HMAA HEM sing 307 n n CMA HMAB HEM sing 308 n n CAA CBA HEM sing 309 n n CAA HAA HEM sing 310 n n CAA HAAA HEM sing 311 n n CBA CGA HEM sing 312 n n CBA HBA HEM sing 313 n n CBA HBAA HEM sing 314 n n CGA O1A HEM doub 315 n n CGA O2A HEM sing 316 n n C1B C2B HEM sing 317 n n C1B NB HEM sing 318 n n C2B C3B HEM doub 319 n n C2B CMB HEM sing 320 n n C3B C4B HEM sing 321 n n C3B CAB HEM sing 322 n n C4B NB HEM doub 323 n n CMB HMB HEM sing 324 n n CMB HMBA HEM sing 325 n n CMB HMBB HEM sing 326 n n CAB CBB HEM doub 327 n n CAB HAB HEM sing 328 n n CBB HBB HEM sing 329 n n CBB HBBA HEM sing 330 n n C1C C2C HEM sing 331 n y C1C NC HEM sing 332 n y C2C C3C HEM doub 333 n y C2C CMC HEM sing 334 n n C3C C4C HEM sing 335 n y C3C CAC HEM sing 336 n n C4C NC HEM sing 337 n y CMC HMC HEM sing 338 n n CMC HMCA HEM sing 339 n n CMC HMCB HEM sing 340 n n CAC CBC HEM doub 341 n n CAC HAC HEM sing 342 n n CBC HBC HEM sing 343 n n CBC HBCA HEM sing 344 n n C1D C2D HEM sing 345 n n C1D ND HEM doub 346 n n C2D C3D HEM doub 347 n n C2D CMD HEM sing 348 n n C3D C4D HEM sing 349 n n C3D CAD HEM sing 350 n n C4D ND HEM sing 351 n n CMD HMD HEM sing 352 n n CMD HMDA HEM sing 353 n n CMD HMDB HEM sing 354 n n CAD CBD HEM sing 355 n n CAD HAD HEM sing 356 n n CAD HADA HEM sing 357 n n CBD CGD HEM sing 358 n n CBD HBD HEM sing 359 n n CBD HBDA HEM sing 360 n n CGD O1D HEM doub 361 n n CGD O2D HEM sing 362 n n O2A H2A HEM sing 363 n n O2D H2D HEM sing 364 n n FE NA HEM sing 365 n n FE NB HEM sing 366 n n FE NC HEM sing 367 n n FE ND HEM sing 368 n n # _atom_sites.entry_id 4G71 _atom_sites.fract_transf_matrix[1][1] 0.006923 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005372 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010167 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013346 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CUB A 1 601 802 CUB CUB . E 5 HEM A 1 602 800 HEM HEM . F 6 HAS A 1 603 801 HAS HAS . G 7 PER A 1 604 803 PER PER . H 8 OLC A 1 605 3 OLC OLC . I 8 OLC A 1 606 4 OLC OLC . J 8 OLC A 1 607 8 OLC OLC . K 8 OLC A 1 608 9 OLC OLC . L 8 OLC A 1 609 10 OLC OLC . M 8 OLC A 1 610 11 OLC OLC . N 8 OLC A 1 611 12 OLC OLC . O 8 OLC A 1 612 13 OLC OLC . P 8 OLC A 1 613 14 OLC OLC . Q 8 OLC A 1 614 15 OLC OLC . R 8 OLC A 1 615 16 OLC OLC . S 9 CUA B 1 201 802 CUA CUA . T 8 OLC B 1 202 5 OLC OLC . U 8 OLC B 1 203 6 OLC OLC . V 8 OLC B 1 204 7 OLC OLC . W 8 OLC C 1 101 1 OLC OLC . X 8 OLC C 1 102 2 OLC OLC . Y 10 HOH A 1 701 1 HOH HOH . Y 10 HOH A 2 702 4 HOH HOH . Y 10 HOH A 3 703 5 HOH HOH . Y 10 HOH A 4 704 7 HOH HOH . Y 10 HOH A 5 705 10 HOH HOH . Y 10 HOH A 6 706 14 HOH HOH . Y 10 HOH A 7 707 15 HOH HOH . Y 10 HOH A 8 708 20 HOH HOH . Y 10 HOH A 9 709 21 HOH HOH . Y 10 HOH A 10 710 23 HOH HOH . Y 10 HOH A 11 711 25 HOH HOH . Y 10 HOH A 12 712 26 HOH HOH . Y 10 HOH A 13 713 27 HOH HOH . Y 10 HOH A 14 714 28 HOH HOH . Y 10 HOH A 15 715 29 HOH HOH . Y 10 HOH A 16 716 31 HOH HOH . Y 10 HOH A 17 717 34 HOH HOH . Y 10 HOH A 18 718 37 HOH HOH . Y 10 HOH A 19 719 38 HOH HOH . Y 10 HOH A 20 720 40 HOH HOH . Y 10 HOH A 21 721 42 HOH HOH . Y 10 HOH A 22 722 46 HOH HOH . Y 10 HOH A 23 723 47 HOH HOH . Y 10 HOH A 24 724 48 HOH HOH . Y 10 HOH A 25 725 49 HOH HOH . Y 10 HOH A 26 726 50 HOH HOH . Y 10 HOH A 27 727 51 HOH HOH . Y 10 HOH A 28 728 53 HOH HOH . Y 10 HOH A 29 729 54 HOH HOH . Y 10 HOH A 30 730 56 HOH HOH . Y 10 HOH A 31 731 57 HOH HOH . Y 10 HOH A 32 732 58 HOH HOH . Y 10 HOH A 33 733 60 HOH HOH . Y 10 HOH A 34 734 61 HOH HOH . Y 10 HOH A 35 735 62 HOH HOH . Y 10 HOH A 36 736 63 HOH HOH . Y 10 HOH A 37 737 64 HOH HOH . Y 10 HOH A 38 738 65 HOH HOH . Y 10 HOH A 39 739 66 HOH HOH . Z 10 HOH B 1 301 3 HOH HOH . Z 10 HOH B 2 302 6 HOH HOH . Z 10 HOH B 3 303 8 HOH HOH . Z 10 HOH B 4 304 11 HOH HOH . Z 10 HOH B 5 305 12 HOH HOH . Z 10 HOH B 6 306 13 HOH HOH . Z 10 HOH B 7 307 16 HOH HOH . Z 10 HOH B 8 308 17 HOH HOH . Z 10 HOH B 9 309 18 HOH HOH . Z 10 HOH B 10 310 19 HOH HOH . Z 10 HOH B 11 311 24 HOH HOH . Z 10 HOH B 12 312 32 HOH HOH . Z 10 HOH B 13 313 33 HOH HOH . Z 10 HOH B 14 314 35 HOH HOH . Z 10 HOH B 15 315 36 HOH HOH . Z 10 HOH B 16 316 41 HOH HOH . Z 10 HOH B 17 317 43 HOH HOH . Z 10 HOH B 18 318 44 HOH HOH . Z 10 HOH B 19 319 45 HOH HOH . Z 10 HOH B 20 320 55 HOH HOH . Z 10 HOH B 21 321 59 HOH HOH . Z 10 HOH B 22 322 67 HOH HOH . Z 10 HOH B 23 323 70 HOH HOH . AA 10 HOH C 1 201 2 HOH HOH . AA 10 HOH C 2 202 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 5 -0.375 -4.5 34.481 1 22.65 ? CHA HEM 602 A 1 HETATM 2 C CHB HEM . . . E 5 1.57 -8.492 36.556 1 21.78 ? CHB HEM 602 A 1 HETATM 3 C CHC HEM . . . E 5 5.897 -6.147 36.455 1 23.8 ? CHC HEM 602 A 1 HETATM 4 C CHD HEM . . . E 5 3.782 -2.614 33.894 1 24.35 ? CHD HEM 602 A 1 HETATM 5 C C1A HEM . . . E 5 -0.199 -5.766 35.256 1 20.73 ? C1A HEM 602 A 1 HETATM 6 C C2A HEM . . . E 5 -1.31 -6.733 35.465 1 20.39 ? C2A HEM 602 A 1 HETATM 7 C C3A HEM . . . E 5 -0.742 -7.841 35.956 1 21.76 ? C3A HEM 602 A 1 HETATM 8 C C4A HEM . . . E 5 0.728 -7.597 36.099 1 21.28 ? C4A HEM 602 A 1 HETATM 9 C CMA HEM . . . E 5 -1.46 -9.033 36.602 1 22.24 ? CMA HEM 602 A 1 HETATM 10 C CAA HEM . . . E 5 -2.69 -6.56 34.891 1 19.27 ? CAA HEM 602 A 1 HETATM 11 C CBA HEM . . . E 5 -3.607 -6.333 36.099 1 22.41 ? CBA HEM 602 A 1 HETATM 12 C CGA HEM . . . E 5 -5.016 -5.904 35.682 1 24.97 ? CGA HEM 602 A 1 HETATM 13 O O1A HEM . . . E 5 -5.896 -5.619 36.526 1 24.24 ? O1A HEM 602 A 1 HETATM 14 O O2A HEM . . . E 5 -5.301 -5.859 34.367 1 25.56 ? O2A HEM 602 A 1 HETATM 15 C C1B HEM . . . E 5 2.989 -8.108 36.763 1 23.48 ? C1B HEM 602 A 1 HETATM 16 C C2B HEM . . . E 5 3.747 -8.822 37.546 1 25.84 ? C2B HEM 602 A 1 HETATM 17 C C3B HEM . . . E 5 5.118 -8.263 37.394 1 27.47 ? C3B HEM 602 A 1 HETATM 18 C C4B HEM . . . E 5 4.898 -6.954 36.765 1 24.76 ? C4B HEM 602 A 1 HETATM 19 C CMB HEM . . . E 5 3.399 -10.226 37.985 1 27.01 ? CMB HEM 602 A 1 HETATM 20 C CAB HEM . . . E 5 6.278 -8.743 37.826 1 29.87 ? CAB HEM 602 A 1 HETATM 21 C CBB HEM . . . E 5 6.775 -8.216 39.148 1 31.64 ? CBB HEM 602 A 1 HETATM 22 C C1C HEM . . . E 5 5.761 -5.092 35.426 1 23.37 ? C1C HEM 602 A 1 HETATM 23 C C2C HEM . . . E 5 6.797 -4.412 34.9 1 23.85 ? C2C HEM 602 A 1 HETATM 24 C C3C HEM . . . E 5 6.137 -3.496 33.928 1 22.38 ? C3C HEM 602 A 1 HETATM 25 C C4C HEM . . . E 5 4.828 -3.673 34.15 1 23.04 ? C4C HEM 602 A 1 HETATM 26 C CMC HEM . . . E 5 8.312 -4.61 35.171 1 22.96 ? CMC HEM 602 A 1 HETATM 27 C CAC HEM . . . E 5 6.723 -2.285 33.262 1 21.68 ? CAC HEM 602 A 1 HETATM 28 C CBC HEM . . . E 5 7.995 -2.064 33.059 1 21.01 ? CBC HEM 602 A 1 HETATM 29 C C1D HEM . . . E 5 2.481 -2.864 33.704 1 24.53 ? C1D HEM 602 A 1 HETATM 30 C C2D HEM . . . E 5 1.463 -1.844 33.323 1 24.45 ? C2D HEM 602 A 1 HETATM 31 C C3D HEM . . . E 5 0.274 -2.267 33.751 1 22.15 ? C3D HEM 602 A 1 HETATM 32 C C4D HEM . . . E 5 0.558 -3.628 34.268 1 22.48 ? C4D HEM 602 A 1 HETATM 33 C CMD HEM . . . E 5 1.733 -0.863 32.2 1 27.62 ? CMD HEM 602 A 1 HETATM 34 C CAD HEM . . . E 5 -1.071 -1.846 33.184 1 21.38 ? CAD HEM 602 A 1 HETATM 35 C CBD HEM . . . E 5 -1.828 -0.934 34.177 1 21.82 ? CBD HEM 602 A 1 HETATM 36 C CGD HEM . . . E 5 -3.177 -0.381 33.679 1 20.8 ? CGD HEM 602 A 1 HETATM 37 O O1D HEM . . . E 5 -3.685 0.617 34.157 1 19.4 ? O1D HEM 602 A 1 HETATM 38 O O2D HEM . . . E 5 -3.859 -0.937 32.689 1 20.62 ? O2D HEM 602 A 1 HETATM 39 N NA HEM . . . E 5 1.004 -6.34 35.768 1 20.67 ? NA HEM 602 A 1 HETATM 40 N NB HEM . . . E 5 3.61 -6.971 36.407 1 23.32 ? NB HEM 602 A 1 HETATM 41 N NC HEM . . . E 5 4.623 -4.863 34.75 1 22.34 ? NC HEM 602 A 1 HETATM 42 N ND HEM . . . E 5 1.829 -3.969 34.084 1 23.66 ? ND HEM 602 A 1 HETATM 43 FE FE HEM . . . E 5 2.697 -5.353 35.296 1 23.54 ? FE HEM 602 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 23 _model_server_stats.element_count 43 #