data_4G71 # _model_server_result.job_id OvYx-fQq6s1AMqbRDmZtEw _model_server_result.datetime_utc '2024-12-08 23:46:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4g71 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":609}' # _entry.id 4G71 # _exptl.entry_id 4G71 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 127.81 _cell.angle_gamma 90 _cell.entry_id 4G71 _cell.length_a 144.44 _cell.length_b 98.36 _cell.length_c 94.84 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4G71 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 H N N ? 8 I N N ? 8 J N N ? 8 K N N ? 8 L N N ? 8 M N N ? 8 N N N ? 8 O N N ? 8 P N N ? 8 Q N N ? 8 R N N ? 8 T N N ? 8 U N N ? 8 V N N ? 8 W N N ? 8 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 79 A HIS 72 1_555 E FE HEM . A HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc2 A NE2 HIS 289 A HIS 282 1_555 D CU CUB . A CUB 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc3 A NE2 HIS 290 A HIS 283 1_555 D CU CUB . A CUB 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc4 A NE2 HIS 391 A HIS 384 1_555 F FE HAS . A HAS 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc5 A NE2 HIS 393 A HIS 386 1_555 E FE HEM . A HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc6 F FE HAS . A HAS 603 1_555 G O1 PER . A PER 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc7 B ND1 HIS 114 B HIS 114 1_555 S CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc8 B SG CYS 149 B CYS 149 1_555 S CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc9 B SG CYS 149 B CYS 149 1_555 S CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc10 B O GLN 151 B GLN 151 1_555 S CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc11 B SG CYS 153 B CYS 153 1_555 S CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc12 B SG CYS 153 B CYS 153 1_555 S CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc13 B ND1 HIS 157 B HIS 157 1_555 S CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc14 B SD MET 160 B MET 160 1_555 S CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 477 n n C10 C9 OLC doub 478 n n C10 C11 OLC sing 479 n n C9 C8 OLC sing 480 n n C17 C16 OLC sing 481 z n C11 C12 OLC sing 482 n n C8 C7 OLC sing 483 n n C24 C22 OLC sing 484 n n C24 O25 OLC sing 485 n n C16 C15 OLC sing 486 n n C12 C13 OLC sing 487 n n C7 C6 OLC sing 488 n n C15 C14 OLC sing 489 n n C13 C14 OLC sing 490 n n C6 C5 OLC sing 491 n n C5 C4 OLC sing 492 n n C4 C3 OLC sing 493 n n C3 C2 OLC sing 494 n n C2 C1 OLC sing 495 n n C21 C22 OLC sing 496 n n C21 O20 OLC sing 497 n n C1 O19 OLC doub 498 n n C1 O20 OLC sing 499 n n C22 O23 OLC sing 500 n n C18 H18 OLC sing 501 n n C18 H18A OLC sing 502 n n C18 H18B OLC sing 503 n n C10 H10 OLC sing 504 n n C9 H9 OLC sing 505 n n C17 H17 OLC sing 506 n n C17 H17A OLC sing 507 n n C11 H11 OLC sing 508 n n C11 H11A OLC sing 509 n n C8 H8 OLC sing 510 n n C8 H8A OLC sing 511 n n C24 H24 OLC sing 512 n n C24 H24A OLC sing 513 n n C16 H16 OLC sing 514 n n C16 H16A OLC sing 515 n n C12 H12 OLC sing 516 n n C12 H12A OLC sing 517 n n C7 H7 OLC sing 518 n n C7 H7A OLC sing 519 n n C15 H15 OLC sing 520 n n C15 H15A OLC sing 521 n n C13 H13 OLC sing 522 n n C13 H13A OLC sing 523 n n C6 H6 OLC sing 524 n n C6 H6A OLC sing 525 n n C14 H14 OLC sing 526 n n C14 H14A OLC sing 527 n n C5 H5 OLC sing 528 n n C5 H5A OLC sing 529 n n C4 H4 OLC sing 530 n n C4 H4A OLC sing 531 n n C3 H3 OLC sing 532 n n C3 H3A OLC sing 533 n n C2 H2 OLC sing 534 n n C2 H2A OLC sing 535 n n C21 H21 OLC sing 536 n n C21 H21A OLC sing 537 n n C22 H22 OLC sing 538 n n O25 HO25 OLC sing 539 n n O23 HO23 OLC sing 540 n n # _atom_sites.entry_id 4G71 _atom_sites.fract_transf_matrix[1][1] 0.006923 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005372 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010167 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013346 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CUB A 1 601 802 CUB CUB . E 5 HEM A 1 602 800 HEM HEM . F 6 HAS A 1 603 801 HAS HAS . G 7 PER A 1 604 803 PER PER . H 8 OLC A 1 605 3 OLC OLC . I 8 OLC A 1 606 4 OLC OLC . J 8 OLC A 1 607 8 OLC OLC . K 8 OLC A 1 608 9 OLC OLC . L 8 OLC A 1 609 10 OLC OLC . M 8 OLC A 1 610 11 OLC OLC . N 8 OLC A 1 611 12 OLC OLC . O 8 OLC A 1 612 13 OLC OLC . P 8 OLC A 1 613 14 OLC OLC . Q 8 OLC A 1 614 15 OLC OLC . R 8 OLC A 1 615 16 OLC OLC . S 9 CUA B 1 201 802 CUA CUA . T 8 OLC B 1 202 5 OLC OLC . U 8 OLC B 1 203 6 OLC OLC . V 8 OLC B 1 204 7 OLC OLC . W 8 OLC C 1 101 1 OLC OLC . X 8 OLC C 1 102 2 OLC OLC . Y 10 HOH A 1 701 1 HOH HOH . Y 10 HOH A 2 702 4 HOH HOH . Y 10 HOH A 3 703 5 HOH HOH . Y 10 HOH A 4 704 7 HOH HOH . Y 10 HOH A 5 705 10 HOH HOH . Y 10 HOH A 6 706 14 HOH HOH . Y 10 HOH A 7 707 15 HOH HOH . Y 10 HOH A 8 708 20 HOH HOH . Y 10 HOH A 9 709 21 HOH HOH . Y 10 HOH A 10 710 23 HOH HOH . Y 10 HOH A 11 711 25 HOH HOH . Y 10 HOH A 12 712 26 HOH HOH . Y 10 HOH A 13 713 27 HOH HOH . Y 10 HOH A 14 714 28 HOH HOH . Y 10 HOH A 15 715 29 HOH HOH . Y 10 HOH A 16 716 31 HOH HOH . Y 10 HOH A 17 717 34 HOH HOH . Y 10 HOH A 18 718 37 HOH HOH . Y 10 HOH A 19 719 38 HOH HOH . Y 10 HOH A 20 720 40 HOH HOH . Y 10 HOH A 21 721 42 HOH HOH . Y 10 HOH A 22 722 46 HOH HOH . Y 10 HOH A 23 723 47 HOH HOH . Y 10 HOH A 24 724 48 HOH HOH . Y 10 HOH A 25 725 49 HOH HOH . Y 10 HOH A 26 726 50 HOH HOH . Y 10 HOH A 27 727 51 HOH HOH . Y 10 HOH A 28 728 53 HOH HOH . Y 10 HOH A 29 729 54 HOH HOH . Y 10 HOH A 30 730 56 HOH HOH . Y 10 HOH A 31 731 57 HOH HOH . Y 10 HOH A 32 732 58 HOH HOH . Y 10 HOH A 33 733 60 HOH HOH . Y 10 HOH A 34 734 61 HOH HOH . Y 10 HOH A 35 735 62 HOH HOH . Y 10 HOH A 36 736 63 HOH HOH . Y 10 HOH A 37 737 64 HOH HOH . Y 10 HOH A 38 738 65 HOH HOH . Y 10 HOH A 39 739 66 HOH HOH . Z 10 HOH B 1 301 3 HOH HOH . Z 10 HOH B 2 302 6 HOH HOH . Z 10 HOH B 3 303 8 HOH HOH . Z 10 HOH B 4 304 11 HOH HOH . Z 10 HOH B 5 305 12 HOH HOH . Z 10 HOH B 6 306 13 HOH HOH . Z 10 HOH B 7 307 16 HOH HOH . Z 10 HOH B 8 308 17 HOH HOH . Z 10 HOH B 9 309 18 HOH HOH . Z 10 HOH B 10 310 19 HOH HOH . Z 10 HOH B 11 311 24 HOH HOH . Z 10 HOH B 12 312 32 HOH HOH . Z 10 HOH B 13 313 33 HOH HOH . Z 10 HOH B 14 314 35 HOH HOH . Z 10 HOH B 15 315 36 HOH HOH . Z 10 HOH B 16 316 41 HOH HOH . Z 10 HOH B 17 317 43 HOH HOH . Z 10 HOH B 18 318 44 HOH HOH . Z 10 HOH B 19 319 45 HOH HOH . Z 10 HOH B 20 320 55 HOH HOH . Z 10 HOH B 21 321 59 HOH HOH . Z 10 HOH B 22 322 67 HOH HOH . Z 10 HOH B 23 323 70 HOH HOH . AA 10 HOH C 1 201 2 HOH HOH . AA 10 HOH C 2 202 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 OLC . . . L 8 14.725 22.272 45.393 1 42.4 ? C9 OLC 609 A 1 HETATM 2 C C8 OLC . . . L 8 16.239 22.388 45.456 1 38.99 ? C8 OLC 609 A 1 HETATM 3 C C24 OLC . . . L 8 26.736 21.767 43.916 1 94.9 ? C24 OLC 609 A 1 HETATM 4 C C7 OLC . . . L 8 17.029 21.409 44.584 1 36.62 ? C7 OLC 609 A 1 HETATM 5 C C6 OLC . . . L 8 18.413 21.325 45.242 1 39.26 ? C6 OLC 609 A 1 HETATM 6 C C5 OLC . . . L 8 19.421 20.506 44.435 1 43.93 ? C5 OLC 609 A 1 HETATM 7 C C4 OLC . . . L 8 20.894 20.742 44.783 1 46.51 ? C4 OLC 609 A 1 HETATM 8 C C3 OLC . . . L 8 21.721 20.685 43.49 1 54.92 ? C3 OLC 609 A 1 HETATM 9 C C2 OLC . . . L 8 23.028 19.909 43.683 1 64.99 ? C2 OLC 609 A 1 HETATM 10 C C21 OLC . . . L 8 25.875 20.252 42.068 1 95.52 ? C21 OLC 609 A 1 HETATM 11 C C1 OLC . . . L 8 23.593 19.297 42.399 1 73.81 ? C1 OLC 609 A 1 HETATM 12 C C22 OLC . . . L 8 26.187 21.693 42.483 1 99.99 ? C22 OLC 609 A 1 HETATM 13 O O19 OLC . . . L 8 23.311 18.171 42.016 1 64.15 ? O19 OLC 609 A 1 HETATM 14 O O25 OLC . . . L 8 28.124 21.384 43.908 1 105.94 ? O25 OLC 609 A 1 HETATM 15 O O23 OLC . . . L 8 27.097 22.285 41.533 1 100.53 ? O23 OLC 609 A 1 HETATM 16 O O20 OLC . . . L 8 24.475 20.147 41.743 1 91 ? O20 OLC 609 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 426 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #