data_4G72
#
_model_server_result.job_id            057xFIdUydmGGSsqOMZXbA 
_model_server_result.datetime_utc      '2025-03-12 04:38:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4g72 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":102}' 
#
_entry.id    4G72 
#
_exptl.entry_id    4G72 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    16 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          127.87 
_cell.angle_gamma         90 
_cell.entry_id            4G72 
_cell.length_a            143.935 
_cell.length_b            98.436 
_cell.length_c            94.565 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4G72 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 H N N 
? 8 I N N 
? 8 J N N 
? 8 K N N 
? 8 L N N 
? 8 M N N 
? 8 N N N 
? 8 O N N 
? 8 P N N 
? 8 Q N N 
? 8 R N N 
? 8 S N N 
? 8 U N N 
? 8 V N N 
? 8 W N N 
? 8 X N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 79 A HIS 72 1_555 E FE HEM . A HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
metalc ? metalc2 A ND1 HIS 240 A HIS 233 1_555 D CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc3 A NE2 HIS 289 A HIS 282 1_555 D CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? 
metalc ? metalc4 A NE2 HIS 290 A HIS 283 1_555 D CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc5 A NE2 HIS 393 A HIS 386 1_555 E FE HEM . A HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc6 D CU CU . A CU 601 1_555 G O2 PER . A PER 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? 
metalc ? metalc7 F FE HAS . A HAS 603 1_555 G O1 PER . A PER 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? 
metalc ? metalc8 B ND1 HIS 114 B HIS 114 1_555 T CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
metalc ? metalc9 B SG CYS 149 B CYS 149 1_555 T CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
metalc ? metalc10 B SG CYS 149 B CYS 149 1_555 T CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? 
metalc ? metalc11 B O GLN 151 B GLN 151 1_555 T CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
metalc ? metalc12 B SG CYS 153 B CYS 153 1_555 T CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc13 B SG CYS 153 B CYS 153 1_555 T CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? 
metalc ? metalc14 B ND1 HIS 157 B HIS 157 1_555 T CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc15 B SD MET 160 B MET 160 1_555 T CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 456 n n 
C10 C9 OLC doub 457 n n 
C10 C11 OLC sing 458 n n 
C9 C8 OLC sing 459 n n 
C17 C16 OLC sing 460 z n 
C11 C12 OLC sing 461 n n 
C8 C7 OLC sing 462 n n 
C24 C22 OLC sing 463 n n 
C24 O25 OLC sing 464 n n 
C16 C15 OLC sing 465 n n 
C12 C13 OLC sing 466 n n 
C7 C6 OLC sing 467 n n 
C15 C14 OLC sing 468 n n 
C13 C14 OLC sing 469 n n 
C6 C5 OLC sing 470 n n 
C5 C4 OLC sing 471 n n 
C4 C3 OLC sing 472 n n 
C3 C2 OLC sing 473 n n 
C2 C1 OLC sing 474 n n 
C21 C22 OLC sing 475 n n 
C21 O20 OLC sing 476 n n 
C1 O19 OLC doub 477 n n 
C1 O20 OLC sing 478 n n 
C22 O23 OLC sing 479 n n 
C18 H18 OLC sing 480 n n 
C18 H18A OLC sing 481 n n 
C18 H18B OLC sing 482 n n 
C10 H10 OLC sing 483 n n 
C9 H9 OLC sing 484 n n 
C17 H17 OLC sing 485 n n 
C17 H17A OLC sing 486 n n 
C11 H11 OLC sing 487 n n 
C11 H11A OLC sing 488 n n 
C8 H8 OLC sing 489 n n 
C8 H8A OLC sing 490 n n 
C24 H24 OLC sing 491 n n 
C24 H24A OLC sing 492 n n 
C16 H16 OLC sing 493 n n 
C16 H16A OLC sing 494 n n 
C12 H12 OLC sing 495 n n 
C12 H12A OLC sing 496 n n 
C7 H7 OLC sing 497 n n 
C7 H7A OLC sing 498 n n 
C15 H15 OLC sing 499 n n 
C15 H15A OLC sing 500 n n 
C13 H13 OLC sing 501 n n 
C13 H13A OLC sing 502 n n 
C6 H6 OLC sing 503 n n 
C6 H6A OLC sing 504 n n 
C14 H14 OLC sing 505 n n 
C14 H14A OLC sing 506 n n 
C5 H5 OLC sing 507 n n 
C5 H5A OLC sing 508 n n 
C4 H4 OLC sing 509 n n 
C4 H4A OLC sing 510 n n 
C3 H3 OLC sing 511 n n 
C3 H3A OLC sing 512 n n 
C2 H2 OLC sing 513 n n 
C2 H2A OLC sing 514 n n 
C21 H21 OLC sing 515 n n 
C21 H21A OLC sing 516 n n 
C22 H22 OLC sing 517 n n 
O25 HO25 OLC sing 518 n n 
O23 HO23 OLC sing 519 n n 
#
_atom_sites.entry_id                     4G72 
_atom_sites.fract_transf_matrix[1][1]    0.006948 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005403 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010159 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013396 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 CU A 1 601 803 CU CU . 
E 5 HEM A 1 602 800 HEM HEM . 
F 6 HAS A 1 603 801 HAS HAS . 
G 7 PER A 1 604 804 PER PER . 
H 8 OLC A 1 605 3 OLC OLC . 
I 8 OLC A 1 606 4 OLC OLC . 
J 8 OLC A 1 607 6 OLC OLC . 
K 8 OLC A 1 608 8 OLC OLC . 
L 8 OLC A 1 609 9 OLC OLC . 
M 8 OLC A 1 610 10 OLC OLC . 
N 8 OLC A 1 611 11 OLC OLC . 
O 8 OLC A 1 612 12 OLC OLC . 
P 8 OLC A 1 613 13 OLC OLC . 
Q 8 OLC A 1 614 14 OLC OLC . 
R 8 OLC A 1 615 15 OLC OLC . 
S 8 OLC A 1 616 16 OLC OLC . 
T 9 CUA B 1 201 802 CUA CUA . 
U 8 OLC B 1 202 5 OLC OLC . 
V 8 OLC B 1 203 7 OLC OLC . 
W 8 OLC C 1 101 1 OLC OLC . 
X 8 OLC C 1 102 2 OLC OLC . 
Y 10 HOH A 1 701 17 HOH HOH . 
Y 10 HOH A 2 702 18 HOH HOH . 
Y 10 HOH A 3 703 19 HOH HOH . 
Y 10 HOH A 4 704 28 HOH HOH . 
Y 10 HOH A 5 705 33 HOH HOH . 
Y 10 HOH A 6 706 43 HOH HOH . 
Y 10 HOH A 7 707 56 HOH HOH . 
Y 10 HOH A 8 708 57 HOH HOH . 
Y 10 HOH A 9 709 67 HOH HOH . 
Y 10 HOH A 10 710 68 HOH HOH . 
Y 10 HOH A 11 711 90 HOH HOH . 
Y 10 HOH A 12 712 100 HOH HOH . 
Y 10 HOH A 13 713 103 HOH HOH . 
Y 10 HOH A 14 714 105 HOH HOH . 
Y 10 HOH A 15 715 126 HOH HOH . 
Y 10 HOH A 16 716 130 HOH HOH . 
Y 10 HOH A 17 717 137 HOH HOH . 
Y 10 HOH A 18 718 139 HOH HOH . 
Y 10 HOH A 19 719 145 HOH HOH . 
Y 10 HOH A 20 720 146 HOH HOH . 
Y 10 HOH A 21 721 148 HOH HOH . 
Y 10 HOH A 22 722 159 HOH HOH . 
Y 10 HOH A 23 723 161 HOH HOH . 
Y 10 HOH A 24 724 171 HOH HOH . 
Y 10 HOH A 25 725 183 HOH HOH . 
Z 10 HOH B 1 301 35 HOH HOH . 
Z 10 HOH B 2 302 48 HOH HOH . 
Z 10 HOH B 3 303 49 HOH HOH . 
Z 10 HOH B 4 304 55 HOH HOH . 
Z 10 HOH B 5 305 63 HOH HOH . 
Z 10 HOH B 6 306 101 HOH HOH . 
Z 10 HOH B 7 307 107 HOH HOH . 
Z 10 HOH B 8 308 128 HOH HOH . 
Z 10 HOH B 9 309 151 HOH HOH . 
Z 10 HOH B 10 310 177 HOH HOH . 
Z 10 HOH B 11 311 180 HOH HOH . 
Z 10 HOH B 12 312 188 HOH HOH . 
Z 10 HOH B 13 313 199 HOH HOH . 
Z 10 HOH B 14 314 204 HOH HOH . 
AA 10 HOH C 1 201 21 HOH HOH . 
AA 10 HOH C 2 202 46 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 OLC . . . X 8 1.428 -40.024 19.438 1 66.01 ? C10 OLC 102 C 1 
HETATM 2 C C9 OLC . . . X 8 0.422 -40.669 20.034 1 68.95 ? C9 OLC 102 C 1 
HETATM 3 C C11 OLC . . . X 8 2.878 -40.397 19.649 1 63.1 ? C11 OLC 102 C 1 
HETATM 4 C C8 OLC . . . X 8 0.622 -41.835 20.98 1 69.4 ? C8 OLC 102 C 1 
HETATM 5 C C24 OLC . . . X 8 -10.306 -46.453 20.368 1 82.97 ? C24 OLC 102 C 1 
HETATM 6 C C16 OLC . . . X 8 8.395 -38.969 20.95 1 64.66 ? C16 OLC 102 C 1 
HETATM 7 C C12 OLC . . . X 8 3.485 -39.526 20.75 1 63.09 ? C12 OLC 102 C 1 
HETATM 8 C C7 OLC . . . X 8 -0.739 -42.264 21.513 1 70.2 ? C7 OLC 102 C 1 
HETATM 9 C C15 OLC . . . X 8 7.062 -39.263 21.631 1 65.21 ? C15 OLC 102 C 1 
HETATM 10 C C13 OLC . . . X 8 4.72 -40.154 21.398 1 61.88 ? C13 OLC 102 C 1 
HETATM 11 C C6 OLC . . . X 8 -1.183 -43.607 20.922 1 70.94 ? C6 OLC 102 C 1 
HETATM 12 C C14 OLC . . . X 8 6.014 -39.798 20.657 1 62.09 ? C14 OLC 102 C 1 
HETATM 13 C C5 OLC . . . X 8 -2.235 -43.48 19.818 1 67.8 ? C5 OLC 102 C 1 
HETATM 14 C C4 OLC . . . X 8 -3.624 -43.118 20.343 1 65.82 ? C4 OLC 102 C 1 
HETATM 15 C C3 OLC . . . X 8 -4.694 -44.034 19.753 1 68.2 ? C3 OLC 102 C 1 
HETATM 16 C C2 OLC . . . X 8 -6.04 -43.313 19.618 1 74.84 ? C2 OLC 102 C 1 
HETATM 17 C C21 OLC . . . X 8 -9.612 -44.034 20.397 1 82.94 ? C21 OLC 102 C 1 
HETATM 18 C C1 OLC . . . X 8 -7.151 -44.073 20.328 1 81.03 ? C1 OLC 102 C 1 
HETATM 19 C C22 OLC . . . X 8 -10.539 -45.07 19.757 1 81.45 ? C22 OLC 102 C 1 
HETATM 20 O O19 OLC . . . X 8 -6.97 -44.723 21.347 1 85.32 ? O19 OLC 102 C 1 
HETATM 21 O O25 OLC . . . X 8 -10.842 -46.531 21.699 1 83.4 ? O25 OLC 102 C 1 
HETATM 22 O O23 OLC . . . X 8 -11.903 -44.674 19.949 1 81.92 ? O23 OLC 102 C 1 
HETATM 23 O O20 OLC . . . X 8 -8.367 -43.935 19.684 1 84.16 ? O20 OLC 102 C 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           347 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           23 
#