data_4G72 # _model_server_result.job_id uGi2a5LX12yT2PnvL3oyqA _model_server_result.datetime_utc '2025-03-12 04:41:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4g72 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":602}' # _entry.id 4G72 # _exptl.entry_id 4G72 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 127.87 _cell.angle_gamma 90 _cell.entry_id 4G72 _cell.length_a 143.935 _cell.length_b 98.436 _cell.length_c 94.565 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4G72 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 79 A HIS 72 1_555 E FE HEM . A HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc2 A ND1 HIS 240 A HIS 233 1_555 D CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc3 A NE2 HIS 289 A HIS 282 1_555 D CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? metalc ? metalc4 A NE2 HIS 290 A HIS 283 1_555 D CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc5 A NE2 HIS 393 A HIS 386 1_555 E FE HEM . A HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc6 D CU CU . A CU 601 1_555 G O2 PER . A PER 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc7 F FE HAS . A HAS 603 1_555 G O1 PER . A PER 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc8 B ND1 HIS 114 B HIS 114 1_555 T CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc9 B SG CYS 149 B CYS 149 1_555 T CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc10 B SG CYS 149 B CYS 149 1_555 T CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc11 B O GLN 151 B GLN 151 1_555 T CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc12 B SG CYS 153 B CYS 153 1_555 T CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc13 B SG CYS 153 B CYS 153 1_555 T CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc14 B ND1 HIS 157 B HIS 157 1_555 T CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc15 B SD MET 160 B MET 160 1_555 T CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 266 n n CHA C4D HEM doub 267 n n CHA HHA HEM sing 268 n n CHB C4A HEM sing 269 n n CHB C1B HEM doub 270 n n CHB HHB HEM sing 271 n n CHC C4B HEM sing 272 n n CHC C1C HEM doub 273 n n CHC HHC HEM sing 274 n n CHD C4C HEM doub 275 n n CHD C1D HEM sing 276 n n CHD HHD HEM sing 277 n n C1A C2A HEM doub 278 n y C1A NA HEM sing 279 n y C2A C3A HEM sing 280 n y C2A CAA HEM sing 281 n n C3A C4A HEM doub 282 n y C3A CMA HEM sing 283 n n C4A NA HEM sing 284 n y CMA HMA HEM sing 285 n n CMA HMAA HEM sing 286 n n CMA HMAB HEM sing 287 n n CAA CBA HEM sing 288 n n CAA HAA HEM sing 289 n n CAA HAAA HEM sing 290 n n CBA CGA HEM sing 291 n n CBA HBA HEM sing 292 n n CBA HBAA HEM sing 293 n n CGA O1A HEM doub 294 n n CGA O2A HEM sing 295 n n C1B C2B HEM sing 296 n n C1B NB HEM sing 297 n n C2B C3B HEM doub 298 n n C2B CMB HEM sing 299 n n C3B C4B HEM sing 300 n n C3B CAB HEM sing 301 n n C4B NB HEM doub 302 n n CMB HMB HEM sing 303 n n CMB HMBA HEM sing 304 n n CMB HMBB HEM sing 305 n n CAB CBB HEM doub 306 n n CAB HAB HEM sing 307 n n CBB HBB HEM sing 308 n n CBB HBBA HEM sing 309 n n C1C C2C HEM sing 310 n y C1C NC HEM sing 311 n y C2C C3C HEM doub 312 n y C2C CMC HEM sing 313 n n C3C C4C HEM sing 314 n y C3C CAC HEM sing 315 n n C4C NC HEM sing 316 n y CMC HMC HEM sing 317 n n CMC HMCA HEM sing 318 n n CMC HMCB HEM sing 319 n n CAC CBC HEM doub 320 n n CAC HAC HEM sing 321 n n CBC HBC HEM sing 322 n n CBC HBCA HEM sing 323 n n C1D C2D HEM sing 324 n n C1D ND HEM doub 325 n n C2D C3D HEM doub 326 n n C2D CMD HEM sing 327 n n C3D C4D HEM sing 328 n n C3D CAD HEM sing 329 n n C4D ND HEM sing 330 n n CMD HMD HEM sing 331 n n CMD HMDA HEM sing 332 n n CMD HMDB HEM sing 333 n n CAD CBD HEM sing 334 n n CAD HAD HEM sing 335 n n CAD HADA HEM sing 336 n n CBD CGD HEM sing 337 n n CBD HBD HEM sing 338 n n CBD HBDA HEM sing 339 n n CGD O1D HEM doub 340 n n CGD O2D HEM sing 341 n n O2A H2A HEM sing 342 n n O2D H2D HEM sing 343 n n FE NA HEM sing 344 n n FE NB HEM sing 345 n n FE NC HEM sing 346 n n FE ND HEM sing 347 n n # _atom_sites.entry_id 4G72 _atom_sites.fract_transf_matrix[1][1] 0.006948 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005403 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010159 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013396 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CU A 1 601 803 CU CU . E 5 HEM A 1 602 800 HEM HEM . F 6 HAS A 1 603 801 HAS HAS . G 7 PER A 1 604 804 PER PER . H 8 OLC A 1 605 3 OLC OLC . I 8 OLC A 1 606 4 OLC OLC . J 8 OLC A 1 607 6 OLC OLC . K 8 OLC A 1 608 8 OLC OLC . L 8 OLC A 1 609 9 OLC OLC . M 8 OLC A 1 610 10 OLC OLC . N 8 OLC A 1 611 11 OLC OLC . O 8 OLC A 1 612 12 OLC OLC . P 8 OLC A 1 613 13 OLC OLC . Q 8 OLC A 1 614 14 OLC OLC . R 8 OLC A 1 615 15 OLC OLC . S 8 OLC A 1 616 16 OLC OLC . T 9 CUA B 1 201 802 CUA CUA . U 8 OLC B 1 202 5 OLC OLC . V 8 OLC B 1 203 7 OLC OLC . W 8 OLC C 1 101 1 OLC OLC . X 8 OLC C 1 102 2 OLC OLC . Y 10 HOH A 1 701 17 HOH HOH . Y 10 HOH A 2 702 18 HOH HOH . Y 10 HOH A 3 703 19 HOH HOH . Y 10 HOH A 4 704 28 HOH HOH . Y 10 HOH A 5 705 33 HOH HOH . Y 10 HOH A 6 706 43 HOH HOH . Y 10 HOH A 7 707 56 HOH HOH . Y 10 HOH A 8 708 57 HOH HOH . Y 10 HOH A 9 709 67 HOH HOH . Y 10 HOH A 10 710 68 HOH HOH . Y 10 HOH A 11 711 90 HOH HOH . Y 10 HOH A 12 712 100 HOH HOH . Y 10 HOH A 13 713 103 HOH HOH . Y 10 HOH A 14 714 105 HOH HOH . Y 10 HOH A 15 715 126 HOH HOH . Y 10 HOH A 16 716 130 HOH HOH . Y 10 HOH A 17 717 137 HOH HOH . Y 10 HOH A 18 718 139 HOH HOH . Y 10 HOH A 19 719 145 HOH HOH . Y 10 HOH A 20 720 146 HOH HOH . Y 10 HOH A 21 721 148 HOH HOH . Y 10 HOH A 22 722 159 HOH HOH . Y 10 HOH A 23 723 161 HOH HOH . Y 10 HOH A 24 724 171 HOH HOH . Y 10 HOH A 25 725 183 HOH HOH . Z 10 HOH B 1 301 35 HOH HOH . Z 10 HOH B 2 302 48 HOH HOH . Z 10 HOH B 3 303 49 HOH HOH . Z 10 HOH B 4 304 55 HOH HOH . Z 10 HOH B 5 305 63 HOH HOH . Z 10 HOH B 6 306 101 HOH HOH . Z 10 HOH B 7 307 107 HOH HOH . Z 10 HOH B 8 308 128 HOH HOH . Z 10 HOH B 9 309 151 HOH HOH . Z 10 HOH B 10 310 177 HOH HOH . Z 10 HOH B 11 311 180 HOH HOH . Z 10 HOH B 12 312 188 HOH HOH . Z 10 HOH B 13 313 199 HOH HOH . Z 10 HOH B 14 314 204 HOH HOH . AA 10 HOH C 1 201 21 HOH HOH . AA 10 HOH C 2 202 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 5 -0.444 -24.675 34.396 1 24.94 ? CHA HEM 602 A 1 HETATM 2 C CHB HEM . . . E 5 1.544 -28.512 36.777 1 23.88 ? CHB HEM 602 A 1 HETATM 3 C CHC HEM . . . E 5 5.873 -26.352 36.369 1 26.58 ? CHC HEM 602 A 1 HETATM 4 C CHD HEM . . . E 5 3.757 -23.171 33.161 1 24.05 ? CHD HEM 602 A 1 HETATM 5 C C1A HEM . . . E 5 -0.224 -25.934 35.159 1 23.78 ? C1A HEM 602 A 1 HETATM 6 C C2A HEM . . . E 5 -1.311 -26.892 35.497 1 24.08 ? C2A HEM 602 A 1 HETATM 7 C C3A HEM . . . E 5 -0.742 -27.903 36.149 1 23.7 ? C3A HEM 602 A 1 HETATM 8 C C4A HEM . . . E 5 0.706 -27.602 36.349 1 23.79 ? C4A HEM 602 A 1 HETATM 9 C CMA HEM . . . E 5 -1.371 -29.24 36.47 1 23.2 ? CMA HEM 602 A 1 HETATM 10 C CAA HEM . . . E 5 -2.728 -26.764 34.995 1 24.44 ? CAA HEM 602 A 1 HETATM 11 C CBA HEM . . . E 5 -3.593 -26.207 36.109 1 25.83 ? CBA HEM 602 A 1 HETATM 12 C CGA HEM . . . E 5 -4.936 -25.862 35.544 1 28.7 ? CGA HEM 602 A 1 HETATM 13 O O1A HEM . . . E 5 -5.891 -25.684 36.301 1 29.14 ? O1A HEM 602 A 1 HETATM 14 O O2A HEM . . . E 5 -5.068 -25.737 34.217 1 32.76 ? O2A HEM 602 A 1 HETATM 15 C C1B HEM . . . E 5 3.003 -28.314 36.808 1 24.76 ? C1B HEM 602 A 1 HETATM 16 C C2B HEM . . . E 5 3.798 -29.036 37.589 1 26.12 ? C2B HEM 602 A 1 HETATM 17 C C3B HEM . . . E 5 5.12 -28.35 37.618 1 26.8 ? C3B HEM 602 A 1 HETATM 18 C C4B HEM . . . E 5 4.886 -27.15 36.765 1 26.51 ? C4B HEM 602 A 1 HETATM 19 C CMB HEM . . . E 5 3.448 -30.305 38.343 1 26.36 ? CMB HEM 602 A 1 HETATM 20 C CAB HEM . . . E 5 6.297 -28.913 37.868 1 27.61 ? CAB HEM 602 A 1 HETATM 21 C CBB HEM . . . E 5 6.706 -29.318 39.272 1 28.76 ? CBB HEM 602 A 1 HETATM 22 C C1C HEM . . . E 5 5.727 -25.277 35.34 1 25.25 ? C1C HEM 602 A 1 HETATM 23 C C2C HEM . . . E 5 6.695 -24.451 34.966 1 24.73 ? C2C HEM 602 A 1 HETATM 24 C C3C HEM . . . E 5 6.02 -23.518 34.049 1 24.31 ? C3C HEM 602 A 1 HETATM 25 C C4C HEM . . . E 5 4.737 -23.81 34.074 1 23.78 ? C4C HEM 602 A 1 HETATM 26 C CMC HEM . . . E 5 8.184 -24.749 34.925 1 23.95 ? CMC HEM 602 A 1 HETATM 27 C CAC HEM . . . E 5 6.73 -22.752 32.99 1 24.98 ? CAC HEM 602 A 1 HETATM 28 C CBC HEM . . . E 5 7.888 -22.181 33.274 1 25.97 ? CBC HEM 602 A 1 HETATM 29 C C1D HEM . . . E 5 2.459 -23.192 33.386 1 25.04 ? C1D HEM 602 A 1 HETATM 30 C C2D HEM . . . E 5 1.473 -22.151 32.95 1 25.22 ? C2D HEM 602 A 1 HETATM 31 C C3D HEM . . . E 5 0.279 -22.525 33.4 1 25.29 ? C3D HEM 602 A 1 HETATM 32 C C4D HEM . . . E 5 0.506 -23.784 34.197 1 25.78 ? C4D HEM 602 A 1 HETATM 33 C CMD HEM . . . E 5 1.767 -20.946 32.094 1 26.02 ? CMD HEM 602 A 1 HETATM 34 C CAD HEM . . . E 5 -1.063 -21.964 32.989 1 24.03 ? CAD HEM 602 A 1 HETATM 35 C CBD HEM . . . E 5 -1.599 -21.128 34.14 1 24.62 ? CBD HEM 602 A 1 HETATM 36 C CGD HEM . . . E 5 -2.963 -20.527 33.846 1 26.59 ? CGD HEM 602 A 1 HETATM 37 O O1D HEM . . . E 5 -3.232 -19.403 34.3 1 27.07 ? O1D HEM 602 A 1 HETATM 38 O O2D HEM . . . E 5 -3.862 -21.217 33.118 1 27.16 ? O2D HEM 602 A 1 HETATM 39 N NA HEM . . . E 5 1.005 -26.493 35.67 1 24 ? NA HEM 602 A 1 HETATM 40 N NB HEM . . . E 5 3.66 -27.302 36.229 1 25.02 ? NB HEM 602 A 1 HETATM 41 N NC HEM . . . E 5 4.576 -24.955 34.745 1 24.11 ? NC HEM 602 A 1 HETATM 42 N ND HEM . . . E 5 1.831 -24.023 34.228 1 25.49 ? ND HEM 602 A 1 HETATM 43 FE FE HEM . . . E 5 2.708 -25.475 35.329 1 24.25 ? FE HEM 602 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #