data_4G72 # _model_server_result.job_id JLb4zehi-sgMai-IKK5Zng _model_server_result.datetime_utc '2025-03-12 04:42:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4g72 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":616}' # _entry.id 4G72 # _exptl.entry_id 4G72 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 127.87 _cell.angle_gamma 90 _cell.entry_id 4G72 _cell.length_a 143.935 _cell.length_b 98.436 _cell.length_c 94.565 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4G72 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 H N N ? 8 I N N ? 8 J N N ? 8 K N N ? 8 L N N ? 8 M N N ? 8 N N N ? 8 O N N ? 8 P N N ? 8 Q N N ? 8 R N N ? 8 S N N ? 8 U N N ? 8 V N N ? 8 W N N ? 8 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 79 A HIS 72 1_555 E FE HEM . A HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc2 A ND1 HIS 240 A HIS 233 1_555 D CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc3 A NE2 HIS 289 A HIS 282 1_555 D CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? metalc ? metalc4 A NE2 HIS 290 A HIS 283 1_555 D CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc5 A NE2 HIS 393 A HIS 386 1_555 E FE HEM . A HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc6 D CU CU . A CU 601 1_555 G O2 PER . A PER 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc7 F FE HAS . A HAS 603 1_555 G O1 PER . A PER 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc8 B ND1 HIS 114 B HIS 114 1_555 T CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc9 B SG CYS 149 B CYS 149 1_555 T CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc10 B SG CYS 149 B CYS 149 1_555 T CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc11 B O GLN 151 B GLN 151 1_555 T CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc12 B SG CYS 153 B CYS 153 1_555 T CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc13 B SG CYS 153 B CYS 153 1_555 T CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc14 B ND1 HIS 157 B HIS 157 1_555 T CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc15 B SD MET 160 B MET 160 1_555 T CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 456 n n C10 C9 OLC doub 457 n n C10 C11 OLC sing 458 n n C9 C8 OLC sing 459 n n C17 C16 OLC sing 460 z n C11 C12 OLC sing 461 n n C8 C7 OLC sing 462 n n C24 C22 OLC sing 463 n n C24 O25 OLC sing 464 n n C16 C15 OLC sing 465 n n C12 C13 OLC sing 466 n n C7 C6 OLC sing 467 n n C15 C14 OLC sing 468 n n C13 C14 OLC sing 469 n n C6 C5 OLC sing 470 n n C5 C4 OLC sing 471 n n C4 C3 OLC sing 472 n n C3 C2 OLC sing 473 n n C2 C1 OLC sing 474 n n C21 C22 OLC sing 475 n n C21 O20 OLC sing 476 n n C1 O19 OLC doub 477 n n C1 O20 OLC sing 478 n n C22 O23 OLC sing 479 n n C18 H18 OLC sing 480 n n C18 H18A OLC sing 481 n n C18 H18B OLC sing 482 n n C10 H10 OLC sing 483 n n C9 H9 OLC sing 484 n n C17 H17 OLC sing 485 n n C17 H17A OLC sing 486 n n C11 H11 OLC sing 487 n n C11 H11A OLC sing 488 n n C8 H8 OLC sing 489 n n C8 H8A OLC sing 490 n n C24 H24 OLC sing 491 n n C24 H24A OLC sing 492 n n C16 H16 OLC sing 493 n n C16 H16A OLC sing 494 n n C12 H12 OLC sing 495 n n C12 H12A OLC sing 496 n n C7 H7 OLC sing 497 n n C7 H7A OLC sing 498 n n C15 H15 OLC sing 499 n n C15 H15A OLC sing 500 n n C13 H13 OLC sing 501 n n C13 H13A OLC sing 502 n n C6 H6 OLC sing 503 n n C6 H6A OLC sing 504 n n C14 H14 OLC sing 505 n n C14 H14A OLC sing 506 n n C5 H5 OLC sing 507 n n C5 H5A OLC sing 508 n n C4 H4 OLC sing 509 n n C4 H4A OLC sing 510 n n C3 H3 OLC sing 511 n n C3 H3A OLC sing 512 n n C2 H2 OLC sing 513 n n C2 H2A OLC sing 514 n n C21 H21 OLC sing 515 n n C21 H21A OLC sing 516 n n C22 H22 OLC sing 517 n n O25 HO25 OLC sing 518 n n O23 HO23 OLC sing 519 n n # _atom_sites.entry_id 4G72 _atom_sites.fract_transf_matrix[1][1] 0.006948 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005403 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010159 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013396 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CU A 1 601 803 CU CU . E 5 HEM A 1 602 800 HEM HEM . F 6 HAS A 1 603 801 HAS HAS . G 7 PER A 1 604 804 PER PER . H 8 OLC A 1 605 3 OLC OLC . I 8 OLC A 1 606 4 OLC OLC . J 8 OLC A 1 607 6 OLC OLC . K 8 OLC A 1 608 8 OLC OLC . L 8 OLC A 1 609 9 OLC OLC . M 8 OLC A 1 610 10 OLC OLC . N 8 OLC A 1 611 11 OLC OLC . O 8 OLC A 1 612 12 OLC OLC . P 8 OLC A 1 613 13 OLC OLC . Q 8 OLC A 1 614 14 OLC OLC . R 8 OLC A 1 615 15 OLC OLC . S 8 OLC A 1 616 16 OLC OLC . T 9 CUA B 1 201 802 CUA CUA . U 8 OLC B 1 202 5 OLC OLC . V 8 OLC B 1 203 7 OLC OLC . W 8 OLC C 1 101 1 OLC OLC . X 8 OLC C 1 102 2 OLC OLC . Y 10 HOH A 1 701 17 HOH HOH . Y 10 HOH A 2 702 18 HOH HOH . Y 10 HOH A 3 703 19 HOH HOH . Y 10 HOH A 4 704 28 HOH HOH . Y 10 HOH A 5 705 33 HOH HOH . Y 10 HOH A 6 706 43 HOH HOH . Y 10 HOH A 7 707 56 HOH HOH . Y 10 HOH A 8 708 57 HOH HOH . Y 10 HOH A 9 709 67 HOH HOH . Y 10 HOH A 10 710 68 HOH HOH . Y 10 HOH A 11 711 90 HOH HOH . Y 10 HOH A 12 712 100 HOH HOH . Y 10 HOH A 13 713 103 HOH HOH . Y 10 HOH A 14 714 105 HOH HOH . Y 10 HOH A 15 715 126 HOH HOH . Y 10 HOH A 16 716 130 HOH HOH . Y 10 HOH A 17 717 137 HOH HOH . Y 10 HOH A 18 718 139 HOH HOH . Y 10 HOH A 19 719 145 HOH HOH . Y 10 HOH A 20 720 146 HOH HOH . Y 10 HOH A 21 721 148 HOH HOH . Y 10 HOH A 22 722 159 HOH HOH . Y 10 HOH A 23 723 161 HOH HOH . Y 10 HOH A 24 724 171 HOH HOH . Y 10 HOH A 25 725 183 HOH HOH . Z 10 HOH B 1 301 35 HOH HOH . Z 10 HOH B 2 302 48 HOH HOH . Z 10 HOH B 3 303 49 HOH HOH . Z 10 HOH B 4 304 55 HOH HOH . Z 10 HOH B 5 305 63 HOH HOH . Z 10 HOH B 6 306 101 HOH HOH . Z 10 HOH B 7 307 107 HOH HOH . Z 10 HOH B 8 308 128 HOH HOH . Z 10 HOH B 9 309 151 HOH HOH . Z 10 HOH B 10 310 177 HOH HOH . Z 10 HOH B 11 311 180 HOH HOH . Z 10 HOH B 12 312 188 HOH HOH . Z 10 HOH B 13 313 199 HOH HOH . Z 10 HOH B 14 314 204 HOH HOH . AA 10 HOH C 1 201 21 HOH HOH . AA 10 HOH C 2 202 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . S 8 3.974 -42.283 29.187 1 57.48 ? C18 OLC 616 A 1 HETATM 2 C C10 OLC . . . S 8 11.936 -41.246 27.531 1 58.97 ? C10 OLC 616 A 1 HETATM 3 C C9 OLC . . . S 8 13.232 -41.065 27.28 1 61.8 ? C9 OLC 616 A 1 HETATM 4 C C17 OLC . . . S 8 5.418 -41.97 28.866 1 61.2 ? C17 OLC 616 A 1 HETATM 5 C C11 OLC . . . S 8 10.885 -41.087 26.456 1 60.53 ? C11 OLC 616 A 1 HETATM 6 C C8 OLC . . . S 8 13.767 -40.697 25.909 1 62.12 ? C8 OLC 616 A 1 HETATM 7 C C24 OLC . . . S 8 25.068 -45.863 27.081 1 74.71 ? C24 OLC 616 A 1 HETATM 8 C C16 OLC . . . S 8 6.264 -41.971 30.141 1 65.13 ? C16 OLC 616 A 1 HETATM 9 C C12 OLC . . . S 8 9.518 -40.891 27.103 1 64.51 ? C12 OLC 616 A 1 HETATM 10 C C7 OLC . . . S 8 15.254 -41.055 25.844 1 61.94 ? C7 OLC 616 A 1 HETATM 11 C C15 OLC . . . S 8 7.621 -42.649 29.954 1 67.11 ? C15 OLC 616 A 1 HETATM 12 C C13 OLC . . . S 8 9.112 -42.089 27.971 1 70.06 ? C13 OLC 616 A 1 HETATM 13 C C6 OLC . . . S 8 15.654 -41.726 24.521 1 60.81 ? C6 OLC 616 A 1 HETATM 14 C C14 OLC . . . S 8 8.699 -41.71 29.4 1 69.3 ? C14 OLC 616 A 1 HETATM 15 C C5 OLC . . . S 8 17.173 -41.792 24.347 1 55.35 ? C5 OLC 616 A 1 HETATM 16 C C4 OLC . . . S 8 17.825 -42.744 25.344 1 53.71 ? C4 OLC 616 A 1 HETATM 17 C C3 OLC . . . S 8 18.857 -42.021 26.186 1 55.71 ? C3 OLC 616 A 1 HETATM 18 C C2 OLC . . . S 8 19.698 -42.983 27.024 1 63.2 ? C2 OLC 616 A 1 HETATM 19 C C21 OLC . . . S 8 23.195 -44.294 26.662 1 76.02 ? C21 OLC 616 A 1 HETATM 20 C C1 OLC . . . S 8 20.989 -43.335 26.307 1 68.24 ? C1 OLC 616 A 1 HETATM 21 C C22 OLC . . . S 8 23.841 -45.205 27.7 1 78.23 ? C22 OLC 616 A 1 HETATM 22 O O19 OLC . . . S 8 21.097 -43.321 25.096 1 70.53 ? O19 OLC 616 A 1 HETATM 23 O O25 OLC . . . S 8 26.173 -44.961 27.2 1 67.21 ? O25 OLC 616 A 1 HETATM 24 O O23 OLC . . . S 8 24.229 -44.43 28.846 1 81.49 ? O23 OLC 616 A 1 HETATM 25 O O20 OLC . . . S 8 22.001 -43.685 27.176 1 74.34 ? O20 OLC 616 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #