data_4G7P # _model_server_result.job_id 45NvF0SuqogUDVseT_J9BA _model_server_result.datetime_utc '2024-11-23 02:49:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4g7p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 4G7P # _exptl.entry_id 4G7P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4G7P _cell.length_a 65.841 _cell.length_b 65.841 _cell.length_c 120.268 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4G7P _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 25 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 25 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 300 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.253 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 121 n n CHA C4D HEM doub 122 n n CHA HHA HEM sing 123 n n CHB C4A HEM sing 124 n n CHB C1B HEM doub 125 n n CHB HHB HEM sing 126 n n CHC C4B HEM sing 127 n n CHC C1C HEM doub 128 n n CHC HHC HEM sing 129 n n CHD C4C HEM doub 130 n n CHD C1D HEM sing 131 n n CHD HHD HEM sing 132 n n C1A C2A HEM doub 133 n y C1A NA HEM sing 134 n y C2A C3A HEM sing 135 n y C2A CAA HEM sing 136 n n C3A C4A HEM doub 137 n y C3A CMA HEM sing 138 n n C4A NA HEM sing 139 n y CMA HMA HEM sing 140 n n CMA HMAA HEM sing 141 n n CMA HMAB HEM sing 142 n n CAA CBA HEM sing 143 n n CAA HAA HEM sing 144 n n CAA HAAA HEM sing 145 n n CBA CGA HEM sing 146 n n CBA HBA HEM sing 147 n n CBA HBAA HEM sing 148 n n CGA O1A HEM doub 149 n n CGA O2A HEM sing 150 n n C1B C2B HEM sing 151 n n C1B NB HEM sing 152 n n C2B C3B HEM doub 153 n n C2B CMB HEM sing 154 n n C3B C4B HEM sing 155 n n C3B CAB HEM sing 156 n n C4B NB HEM doub 157 n n CMB HMB HEM sing 158 n n CMB HMBA HEM sing 159 n n CMB HMBB HEM sing 160 n n CAB CBB HEM doub 161 n n CAB HAB HEM sing 162 n n CBB HBB HEM sing 163 n n CBB HBBA HEM sing 164 n n C1C C2C HEM sing 165 n y C1C NC HEM sing 166 n y C2C C3C HEM doub 167 n y C2C CMC HEM sing 168 n n C3C C4C HEM sing 169 n y C3C CAC HEM sing 170 n n C4C NC HEM sing 171 n y CMC HMC HEM sing 172 n n CMC HMCA HEM sing 173 n n CMC HMCB HEM sing 174 n n CAC CBC HEM doub 175 n n CAC HAC HEM sing 176 n n CBC HBC HEM sing 177 n n CBC HBCA HEM sing 178 n n C1D C2D HEM sing 179 n n C1D ND HEM doub 180 n n C2D C3D HEM doub 181 n n C2D CMD HEM sing 182 n n C3D C4D HEM sing 183 n n C3D CAD HEM sing 184 n n C4D ND HEM sing 185 n n CMD HMD HEM sing 186 n n CMD HMDA HEM sing 187 n n CMD HMDB HEM sing 188 n n CAD CBD HEM sing 189 n n CAD HAD HEM sing 190 n n CAD HADA HEM sing 191 n n CBD CGD HEM sing 192 n n CBD HBD HEM sing 193 n n CBD HBDA HEM sing 194 n n CGD O1D HEM doub 195 n n CGD O2D HEM sing 196 n n O2A H2A HEM sing 197 n n O2D H2D HEM sing 198 n n FE NA HEM sing 199 n n FE NB HEM sing 200 n n FE NC HEM sing 201 n n FE ND HEM sing 202 n n # _atom_sites.entry_id 4G7P _atom_sites.fract_transf_matrix[1][1] 0.015188 _atom_sites.fract_transf_matrix[1][2] 0.008769 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017538 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008315 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 300 300 HEM HEM . C 3 CMO A 1 301 301 CMO CMO . D 4 FMT A 1 302 302 FMT FMT . E 5 HOH A 1 401 1 HOH HOH . E 5 HOH A 2 402 2 HOH HOH . E 5 HOH A 3 403 3 HOH HOH . E 5 HOH A 4 404 4 HOH HOH . E 5 HOH A 5 405 5 HOH HOH . E 5 HOH A 6 406 6 HOH HOH . E 5 HOH A 7 407 7 HOH HOH . E 5 HOH A 8 408 8 HOH HOH . E 5 HOH A 9 409 9 HOH HOH . E 5 HOH A 10 410 10 HOH HOH . E 5 HOH A 11 411 11 HOH HOH . E 5 HOH A 12 412 12 HOH HOH . E 5 HOH A 13 413 13 HOH HOH . E 5 HOH A 14 414 14 HOH HOH . E 5 HOH A 15 415 15 HOH HOH . E 5 HOH A 16 416 16 HOH HOH . E 5 HOH A 17 417 17 HOH HOH . E 5 HOH A 18 418 18 HOH HOH . E 5 HOH A 19 419 19 HOH HOH . E 5 HOH A 20 420 20 HOH HOH . E 5 HOH A 21 421 21 HOH HOH . E 5 HOH A 22 422 22 HOH HOH . E 5 HOH A 23 423 23 HOH HOH . E 5 HOH A 24 424 24 HOH HOH . E 5 HOH A 25 425 25 HOH HOH . E 5 HOH A 26 426 26 HOH HOH . E 5 HOH A 27 427 27 HOH HOH . E 5 HOH A 28 428 28 HOH HOH . E 5 HOH A 29 429 29 HOH HOH . E 5 HOH A 30 430 30 HOH HOH . E 5 HOH A 31 431 31 HOH HOH . E 5 HOH A 32 432 32 HOH HOH . E 5 HOH A 33 433 33 HOH HOH . E 5 HOH A 34 434 34 HOH HOH . E 5 HOH A 35 435 35 HOH HOH . E 5 HOH A 36 436 36 HOH HOH . E 5 HOH A 37 437 37 HOH HOH . E 5 HOH A 38 438 38 HOH HOH . E 5 HOH A 39 439 39 HOH HOH . E 5 HOH A 40 440 40 HOH HOH . E 5 HOH A 41 441 41 HOH HOH . E 5 HOH A 42 442 42 HOH HOH . E 5 HOH A 43 443 43 HOH HOH . E 5 HOH A 44 444 44 HOH HOH . E 5 HOH A 45 445 45 HOH HOH . E 5 HOH A 46 446 46 HOH HOH . E 5 HOH A 47 447 47 HOH HOH . E 5 HOH A 48 448 48 HOH HOH . E 5 HOH A 49 449 49 HOH HOH . E 5 HOH A 50 450 50 HOH HOH . E 5 HOH A 51 451 51 HOH HOH . E 5 HOH A 52 452 52 HOH HOH . E 5 HOH A 53 453 53 HOH HOH . E 5 HOH A 54 454 54 HOH HOH . E 5 HOH A 55 455 55 HOH HOH . E 5 HOH A 56 456 56 HOH HOH . E 5 HOH A 57 457 57 HOH HOH . E 5 HOH A 58 458 58 HOH HOH . E 5 HOH A 59 459 59 HOH HOH . E 5 HOH A 60 460 60 HOH HOH . E 5 HOH A 61 461 61 HOH HOH . E 5 HOH A 62 462 62 HOH HOH . E 5 HOH A 63 463 63 HOH HOH . E 5 HOH A 64 464 64 HOH HOH . E 5 HOH A 65 465 65 HOH HOH . E 5 HOH A 66 466 66 HOH HOH . E 5 HOH A 67 467 67 HOH HOH . E 5 HOH A 68 468 68 HOH HOH . E 5 HOH A 69 469 69 HOH HOH . E 5 HOH A 70 470 70 HOH HOH . E 5 HOH A 71 471 71 HOH HOH . E 5 HOH A 72 472 72 HOH HOH . E 5 HOH A 73 473 74 HOH HOH . E 5 HOH A 74 474 75 HOH HOH . E 5 HOH A 75 475 76 HOH HOH . E 5 HOH A 76 476 77 HOH HOH . E 5 HOH A 77 477 78 HOH HOH . E 5 HOH A 78 478 79 HOH HOH . E 5 HOH A 79 479 80 HOH HOH . E 5 HOH A 80 480 81 HOH HOH . E 5 HOH A 81 481 82 HOH HOH . E 5 HOH A 82 482 83 HOH HOH . E 5 HOH A 83 483 84 HOH HOH . E 5 HOH A 84 484 85 HOH HOH . E 5 HOH A 85 485 86 HOH HOH . E 5 HOH A 86 486 87 HOH HOH . E 5 HOH A 87 487 88 HOH HOH . E 5 HOH A 88 488 89 HOH HOH . E 5 HOH A 89 489 90 HOH HOH . E 5 HOH A 90 490 91 HOH HOH . E 5 HOH A 91 491 92 HOH HOH . E 5 HOH A 92 492 93 HOH HOH . E 5 HOH A 93 493 94 HOH HOH . E 5 HOH A 94 494 95 HOH HOH . E 5 HOH A 95 495 96 HOH HOH . E 5 HOH A 96 496 97 HOH HOH . E 5 HOH A 97 497 98 HOH HOH . E 5 HOH A 98 498 99 HOH HOH . E 5 HOH A 99 499 100 HOH HOH . E 5 HOH A 100 500 101 HOH HOH . E 5 HOH A 101 501 102 HOH HOH . E 5 HOH A 102 502 103 HOH HOH . E 5 HOH A 103 503 104 HOH HOH . E 5 HOH A 104 504 105 HOH HOH . E 5 HOH A 105 505 106 HOH HOH . E 5 HOH A 106 506 107 HOH HOH . E 5 HOH A 107 507 108 HOH HOH . E 5 HOH A 108 508 109 HOH HOH . E 5 HOH A 109 509 110 HOH HOH . E 5 HOH A 110 510 111 HOH HOH . E 5 HOH A 111 511 112 HOH HOH . E 5 HOH A 112 512 113 HOH HOH . E 5 HOH A 113 513 114 HOH HOH . E 5 HOH A 114 514 115 HOH HOH . E 5 HOH A 115 515 116 HOH HOH . E 5 HOH A 116 516 117 HOH HOH . E 5 HOH A 117 517 118 HOH HOH . E 5 HOH A 118 518 119 HOH HOH . E 5 HOH A 119 519 120 HOH HOH . E 5 HOH A 120 520 121 HOH HOH . E 5 HOH A 121 521 122 HOH HOH . E 5 HOH A 122 522 123 HOH HOH . E 5 HOH A 123 523 124 HOH HOH . E 5 HOH A 124 524 125 HOH HOH . E 5 HOH A 125 525 126 HOH HOH . E 5 HOH A 126 526 127 HOH HOH . E 5 HOH A 127 527 128 HOH HOH . E 5 HOH A 128 528 129 HOH HOH . E 5 HOH A 129 529 130 HOH HOH . E 5 HOH A 130 530 131 HOH HOH . E 5 HOH A 131 531 132 HOH HOH . E 5 HOH A 132 532 133 HOH HOH . E 5 HOH A 133 533 134 HOH HOH . E 5 HOH A 134 534 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -41.552 9.379 -27.599 1 26.24 ? CHA HEM 300 A 1 HETATM 2 C CHB HEM . . . B 2 -41.162 12.977 -31.214 1 29.65 ? CHB HEM 300 A 1 HETATM 3 C CHC HEM . . . B 2 -38.417 15.674 -28.386 1 26.6 ? CHC HEM 300 A 1 HETATM 4 C CHD HEM . . . B 2 -38.437 12.142 -24.959 1 23.86 ? CHD HEM 300 A 1 HETATM 5 C C1A HEM . . . B 2 -41.688 10.193 -28.806 1 29.32 ? C1A HEM 300 A 1 HETATM 6 C C2A HEM . . . B 2 -42.395 9.716 -30.019 1 29.94 ? C2A HEM 300 A 1 HETATM 7 C C3A HEM . . . B 2 -42.296 10.724 -31.053 1 32.87 ? C3A HEM 300 A 1 HETATM 8 C C4A HEM . . . B 2 -41.483 11.801 -30.385 1 29.17 ? C4A HEM 300 A 1 HETATM 9 C CMA HEM . . . B 2 -42.91 10.667 -32.471 1 36.05 ? CMA HEM 300 A 1 HETATM 10 C CAA HEM . . . B 2 -43.111 8.427 -30.037 1 33.98 ? CAA HEM 300 A 1 HETATM 11 C CBA HEM . . . B 2 -44.471 8.679 -29.393 1 38.55 ? CBA HEM 300 A 1 HETATM 12 C CGA HEM . . . B 2 -45.266 7.381 -29.261 1 47.46 ? CGA HEM 300 A 1 HETATM 13 O O1A HEM . . . B 2 -44.662 6.332 -29.526 1 45.36 ? O1A HEM 300 A 1 HETATM 14 O O2A HEM . . . B 2 -46.461 7.407 -28.863 1 53.14 ? O2A HEM 300 A 1 HETATM 15 C C1B HEM . . . B 2 -40.337 14.051 -30.814 1 28.06 ? C1B HEM 300 A 1 HETATM 16 C C2B HEM . . . B 2 -40.107 15.239 -31.651 1 28.64 ? C2B HEM 300 A 1 HETATM 17 C C3B HEM . . . B 2 -39.301 15.978 -30.728 1 30.99 ? C3B HEM 300 A 1 HETATM 18 C C4B HEM . . . B 2 -39.15 15.148 -29.528 1 29.32 ? C4B HEM 300 A 1 HETATM 19 C CMB HEM . . . B 2 -40.613 15.567 -33.02 1 34.7 ? CMB HEM 300 A 1 HETATM 20 C CAB HEM . . . B 2 -38.74 17.335 -30.888 1 31.9 ? CAB HEM 300 A 1 HETATM 21 C CBB HEM . . . B 2 -39.182 18.058 -31.9 1 35.78 ? CBB HEM 300 A 1 HETATM 22 C C1C HEM . . . B 2 -38.148 14.958 -27.173 1 27.5 ? C1C HEM 300 A 1 HETATM 23 C C2C HEM . . . B 2 -37.304 15.55 -26.123 1 25.04 ? C2C HEM 300 A 1 HETATM 24 C C3C HEM . . . B 2 -37.342 14.452 -25.146 1 26.44 ? C3C HEM 300 A 1 HETATM 25 C C4C HEM . . . B 2 -38.11 13.33 -25.664 1 24.31 ? C4C HEM 300 A 1 HETATM 26 C CMC HEM . . . B 2 -36.666 16.903 -26.16 1 25.98 ? CMC HEM 300 A 1 HETATM 27 C CAC HEM . . . B 2 -36.645 14.298 -23.889 1 26.38 ? CAC HEM 300 A 1 HETATM 28 C CBC HEM . . . B 2 -35.668 15.062 -23.605 1 34.77 ? CBC HEM 300 A 1 HETATM 29 C C1D HEM . . . B 2 -39.288 11.078 -25.41 1 24.22 ? C1D HEM 300 A 1 HETATM 30 C C2D HEM . . . B 2 -39.509 9.953 -24.504 1 25.32 ? C2D HEM 300 A 1 HETATM 31 C C3D HEM . . . B 2 -40.401 9.146 -25.292 1 26.5 ? C3D HEM 300 A 1 HETATM 32 C C4D HEM . . . B 2 -40.612 9.872 -26.548 1 26.68 ? C4D HEM 300 A 1 HETATM 33 C CMD HEM . . . B 2 -39.008 9.583 -23.128 1 24.53 ? CMD HEM 300 A 1 HETATM 34 C CAD HEM . . . B 2 -40.987 7.837 -24.909 1 28.07 ? CAD HEM 300 A 1 HETATM 35 C CBD HEM . . . B 2 -42.401 8.031 -24.453 1 30.48 ? CBD HEM 300 A 1 HETATM 36 C CGD HEM . . . B 2 -42.849 6.683 -23.903 1 30.69 ? CGD HEM 300 A 1 HETATM 37 O O1D HEM . . . B 2 -43.11 5.799 -24.729 1 35.75 ? O1D HEM 300 A 1 HETATM 38 O O2D HEM . . . B 2 -43.042 6.463 -22.684 1 32.99 ? O2D HEM 300 A 1 HETATM 39 N NA HEM . . . B 2 -41.177 11.526 -28.979 1 27.6 ? NA HEM 300 A 1 HETATM 40 N NB HEM . . . B 2 -39.83 14.012 -29.539 1 28.96 ? NB HEM 300 A 1 HETATM 41 N NC HEM . . . B 2 -38.742 13.723 -26.831 1 25.74 ? NC HEM 300 A 1 HETATM 42 N ND HEM . . . B 2 -39.978 11.076 -26.606 1 27.25 ? ND HEM 300 A 1 HETATM 43 FE FE HEM . . . B 2 -39.76 12.547 -28.052 1 28.57 ? FE HEM 300 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 43 #