data_4G7Q # _model_server_result.job_id kAemHxf4DapY4ogKMiQ4xA _model_server_result.datetime_utc '2025-07-15 09:14:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4g7q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":602}' # _entry.id 4G7Q # _exptl.entry_id 4G7Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 127.82 _cell.angle_gamma 90 _cell.entry_id 4G7Q _cell.length_a 143.67 _cell.length_b 98.18 _cell.length_c 94.56 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4G7Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 79 A HIS 72 1_555 E FE HEM . A HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc2 A ND1 HIS 240 A HIS 233 1_555 D CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? metalc ? metalc3 A NE2 HIS 289 A HIS 282 1_555 D CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc4 A NE2 HIS 290 A HIS 283 1_555 D CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? metalc ? metalc5 A NE2 HIS 391 A HIS 384 1_555 F FE HAS . A HAS 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc6 A NE2 HIS 393 A HIS 386 1_555 E FE HEM . A HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc7 D CU CU . A CU 601 1_555 G O2 PER . A PER 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc8 F FE HAS . A HAS 603 1_555 G O1 PER . A PER 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.863 ? metalc ? metalc9 B ND1 HIS 114 B HIS 114 1_555 R CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc10 B SG CYS 149 B CYS 149 1_555 R CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc11 B SG CYS 149 B CYS 149 1_555 R CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc12 B O GLN 151 B GLN 151 1_555 R CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc13 B SG CYS 153 B CYS 153 1_555 R CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc14 B SG CYS 153 B CYS 153 1_555 R CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc15 B ND1 HIS 157 B HIS 157 1_555 R CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc16 B SD MET 160 B MET 160 1_555 R CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 266 n n CHA C4D HEM doub 267 n n CHA HHA HEM sing 268 n n CHB C4A HEM sing 269 n n CHB C1B HEM doub 270 n n CHB HHB HEM sing 271 n n CHC C4B HEM sing 272 n n CHC C1C HEM doub 273 n n CHC HHC HEM sing 274 n n CHD C4C HEM doub 275 n n CHD C1D HEM sing 276 n n CHD HHD HEM sing 277 n n C1A C2A HEM doub 278 n y C1A NA HEM sing 279 n y C2A C3A HEM sing 280 n y C2A CAA HEM sing 281 n n C3A C4A HEM doub 282 n y C3A CMA HEM sing 283 n n C4A NA HEM sing 284 n y CMA HMA HEM sing 285 n n CMA HMAA HEM sing 286 n n CMA HMAB HEM sing 287 n n CAA CBA HEM sing 288 n n CAA HAA HEM sing 289 n n CAA HAAA HEM sing 290 n n CBA CGA HEM sing 291 n n CBA HBA HEM sing 292 n n CBA HBAA HEM sing 293 n n CGA O1A HEM doub 294 n n CGA O2A HEM sing 295 n n C1B C2B HEM sing 296 n n C1B NB HEM sing 297 n n C2B C3B HEM doub 298 n n C2B CMB HEM sing 299 n n C3B C4B HEM sing 300 n n C3B CAB HEM sing 301 n n C4B NB HEM doub 302 n n CMB HMB HEM sing 303 n n CMB HMBA HEM sing 304 n n CMB HMBB HEM sing 305 n n CAB CBB HEM doub 306 n n CAB HAB HEM sing 307 n n CBB HBB HEM sing 308 n n CBB HBBA HEM sing 309 n n C1C C2C HEM sing 310 n y C1C NC HEM sing 311 n y C2C C3C HEM doub 312 n y C2C CMC HEM sing 313 n n C3C C4C HEM sing 314 n y C3C CAC HEM sing 315 n n C4C NC HEM sing 316 n y CMC HMC HEM sing 317 n n CMC HMCA HEM sing 318 n n CMC HMCB HEM sing 319 n n CAC CBC HEM doub 320 n n CAC HAC HEM sing 321 n n CBC HBC HEM sing 322 n n CBC HBCA HEM sing 323 n n C1D C2D HEM sing 324 n n C1D ND HEM doub 325 n n C2D C3D HEM doub 326 n n C2D CMD HEM sing 327 n n C3D C4D HEM sing 328 n n C3D CAD HEM sing 329 n n C4D ND HEM sing 330 n n CMD HMD HEM sing 331 n n CMD HMDA HEM sing 332 n n CMD HMDB HEM sing 333 n n CAD CBD HEM sing 334 n n CAD HAD HEM sing 335 n n CAD HADA HEM sing 336 n n CBD CGD HEM sing 337 n n CBD HBD HEM sing 338 n n CBD HBDA HEM sing 339 n n CGD O1D HEM doub 340 n n CGD O2D HEM sing 341 n n O2A H2A HEM sing 342 n n O2D H2D HEM sing 343 n n FE NA HEM sing 344 n n FE NB HEM sing 345 n n FE NC HEM sing 346 n n FE ND HEM sing 347 n n # _atom_sites.entry_id 4G7Q _atom_sites.fract_transf_matrix[1][1] 0.00696 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005403 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010185 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013387 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CU A 1 601 803 CU CU . E 5 HEM A 1 602 800 HEM HEM . F 6 HAS A 1 603 801 HAS HAS . G 7 PER A 1 604 804 PER PER . H 8 OLC A 1 605 3 OLC OLC . I 8 OLC A 1 606 4 OLC OLC . J 8 OLC A 1 607 9 OLC OLC . K 8 OLC A 1 608 10 OLC OLC . L 8 OLC A 1 609 11 OLC OLC . M 8 OLC A 1 610 12 OLC OLC . N 8 OLC A 1 611 13 OLC OLC . O 8 OLC A 1 612 14 OLC OLC . P 8 OLC A 1 613 15 OLC OLC . Q 8 OLC A 1 614 16 OLC OLC . R 9 CUA B 1 201 802 CUA CUA . S 8 OLC B 1 202 5 OLC OLC . T 8 OLC B 1 203 6 OLC OLC . U 8 OLC B 1 204 7 OLC OLC . V 8 OLC B 1 205 8 OLC OLC . W 8 OLC C 1 101 1 OLC OLC . X 8 OLC C 1 102 2 OLC OLC . Y 10 HOH A 1 701 2 HOH HOH . Y 10 HOH A 2 702 3 HOH HOH . Y 10 HOH A 3 703 4 HOH HOH . Y 10 HOH A 4 704 5 HOH HOH . Y 10 HOH A 5 705 6 HOH HOH . Y 10 HOH A 6 706 7 HOH HOH . Y 10 HOH A 7 707 8 HOH HOH . Y 10 HOH A 8 708 9 HOH HOH . Y 10 HOH A 9 709 11 HOH HOH . Y 10 HOH A 10 710 13 HOH HOH . Y 10 HOH A 11 711 14 HOH HOH . Y 10 HOH A 12 712 17 HOH HOH . Y 10 HOH A 13 713 19 HOH HOH . Y 10 HOH A 14 714 20 HOH HOH . Y 10 HOH A 15 715 23 HOH HOH . Y 10 HOH A 16 716 25 HOH HOH . Y 10 HOH A 17 717 27 HOH HOH . Y 10 HOH A 18 718 28 HOH HOH . Y 10 HOH A 19 719 29 HOH HOH . Y 10 HOH A 20 720 30 HOH HOH . Y 10 HOH A 21 721 32 HOH HOH . Y 10 HOH A 22 722 34 HOH HOH . Y 10 HOH A 23 723 35 HOH HOH . Y 10 HOH A 24 724 36 HOH HOH . Y 10 HOH A 25 725 37 HOH HOH . Y 10 HOH A 26 726 39 HOH HOH . Y 10 HOH A 27 727 40 HOH HOH . Y 10 HOH A 28 728 41 HOH HOH . Y 10 HOH A 29 729 42 HOH HOH . Y 10 HOH A 30 730 43 HOH HOH . Y 10 HOH A 31 731 44 HOH HOH . Y 10 HOH A 32 732 45 HOH HOH . Y 10 HOH A 33 733 46 HOH HOH . Y 10 HOH A 34 734 47 HOH HOH . Y 10 HOH A 35 735 48 HOH HOH . Y 10 HOH A 36 736 49 HOH HOH . Y 10 HOH A 37 737 50 HOH HOH . Y 10 HOH A 38 738 51 HOH HOH . Y 10 HOH A 39 739 53 HOH HOH . Y 10 HOH A 40 740 55 HOH HOH . Y 10 HOH A 41 741 56 HOH HOH . Y 10 HOH A 42 742 57 HOH HOH . Y 10 HOH A 43 743 59 HOH HOH . Y 10 HOH A 44 744 60 HOH HOH . Y 10 HOH A 45 745 62 HOH HOH . Y 10 HOH A 46 746 64 HOH HOH . Y 10 HOH A 47 747 65 HOH HOH . Y 10 HOH A 48 748 66 HOH HOH . Y 10 HOH A 49 749 67 HOH HOH . Y 10 HOH A 50 750 69 HOH HOH . Y 10 HOH A 51 751 71 HOH HOH . Y 10 HOH A 52 752 72 HOH HOH . Y 10 HOH A 53 753 73 HOH HOH . Z 10 HOH B 1 301 1 HOH HOH . Z 10 HOH B 2 302 10 HOH HOH . Z 10 HOH B 3 303 12 HOH HOH . Z 10 HOH B 4 304 15 HOH HOH . Z 10 HOH B 5 305 16 HOH HOH . Z 10 HOH B 6 306 18 HOH HOH . Z 10 HOH B 7 307 21 HOH HOH . Z 10 HOH B 8 308 24 HOH HOH . Z 10 HOH B 9 309 26 HOH HOH . Z 10 HOH B 10 310 31 HOH HOH . Z 10 HOH B 11 311 33 HOH HOH . Z 10 HOH B 12 312 38 HOH HOH . Z 10 HOH B 13 313 52 HOH HOH . Z 10 HOH B 14 314 54 HOH HOH . Z 10 HOH B 15 315 58 HOH HOH . Z 10 HOH B 16 316 61 HOH HOH . Z 10 HOH B 17 317 63 HOH HOH . Z 10 HOH B 18 318 68 HOH HOH . Z 10 HOH B 19 319 70 HOH HOH . Z 10 HOH B 20 320 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 5 -0.534 -3.443 34.792 1 15.79 ? CHA HEM 602 A 1 HETATM 2 C CHB HEM . . . E 5 1.484 -7.49 36.841 1 16.24 ? CHB HEM 602 A 1 HETATM 3 C CHC HEM . . . E 5 5.862 -5.326 36.318 1 17.26 ? CHC HEM 602 A 1 HETATM 4 C CHD HEM . . . E 5 3.703 -1.892 33.355 1 16.15 ? CHD HEM 602 A 1 HETATM 5 C C1A HEM . . . E 5 -0.314 -4.87 35.215 1 14.72 ? C1A HEM 602 A 1 HETATM 6 C C2A HEM . . . E 5 -1.375 -5.905 35.375 1 15.46 ? C2A HEM 602 A 1 HETATM 7 C C3A HEM . . . E 5 -0.773 -7.025 35.879 1 15.34 ? C3A HEM 602 A 1 HETATM 8 C C4A HEM . . . E 5 0.632 -6.662 36.23 1 16.53 ? C4A HEM 602 A 1 HETATM 9 C CMA HEM . . . E 5 -1.423 -8.325 36.322 1 13.77 ? CMA HEM 602 A 1 HETATM 10 C CAA HEM . . . E 5 -2.841 -5.697 34.935 1 14.43 ? CAA HEM 602 A 1 HETATM 11 C CBA HEM . . . E 5 -3.662 -5.202 36.09 1 14.74 ? CBA HEM 602 A 1 HETATM 12 C CGA HEM . . . E 5 -5.015 -4.756 35.644 1 17.03 ? CGA HEM 602 A 1 HETATM 13 O O1A HEM . . . E 5 -5.922 -4.497 36.474 1 18.05 ? O1A HEM 602 A 1 HETATM 14 O O2A HEM . . . E 5 -5.267 -4.643 34.345 1 17.42 ? O2A HEM 602 A 1 HETATM 15 C C1B HEM . . . E 5 2.956 -7.262 36.756 1 17.1 ? C1B HEM 602 A 1 HETATM 16 C C2B HEM . . . E 5 3.803 -8.01 37.513 1 19.19 ? C2B HEM 602 A 1 HETATM 17 C C3B HEM . . . E 5 5.132 -7.345 37.515 1 17.45 ? C3B HEM 602 A 1 HETATM 18 C C4B HEM . . . E 5 4.877 -6.159 36.655 1 17.46 ? C4B HEM 602 A 1 HETATM 19 C CMB HEM . . . E 5 3.499 -9.271 38.338 1 19.48 ? CMB HEM 602 A 1 HETATM 20 C CAB HEM . . . E 5 6.298 -7.901 37.794 1 17.79 ? CAB HEM 602 A 1 HETATM 21 C CBB HEM . . . E 5 6.844 -8.133 39.185 1 17.96 ? CBB HEM 602 A 1 HETATM 22 C C1C HEM . . . E 5 5.691 -4.208 35.353 1 17.18 ? C1C HEM 602 A 1 HETATM 23 C C2C HEM . . . E 5 6.683 -3.541 34.763 1 17.94 ? C2C HEM 602 A 1 HETATM 24 C C3C HEM . . . E 5 6 -2.59 33.872 1 17.02 ? C3C HEM 602 A 1 HETATM 25 C C4C HEM . . . E 5 4.708 -2.661 34.135 1 16.27 ? C4C HEM 602 A 1 HETATM 26 C CMC HEM . . . E 5 8.2 -3.717 34.86 1 17.21 ? CMC HEM 602 A 1 HETATM 27 C CAC HEM . . . E 5 6.701 -1.818 32.824 1 18.37 ? CAC HEM 602 A 1 HETATM 28 C CBC HEM . . . E 5 7.727 -1.005 33.085 1 18.98 ? CBC HEM 602 A 1 HETATM 29 C C1D HEM . . . E 5 2.385 -2.055 33.478 1 16.25 ? C1D HEM 602 A 1 HETATM 30 C C2D HEM . . . E 5 1.399 -0.997 33.105 1 15.94 ? C2D HEM 602 A 1 HETATM 31 C C3D HEM . . . E 5 0.195 -1.386 33.526 1 15.88 ? C3D HEM 602 A 1 HETATM 32 C C4D HEM . . . E 5 0.431 -2.66 34.295 1 15.95 ? C4D HEM 602 A 1 HETATM 33 C CMD HEM . . . E 5 1.722 0.207 32.258 1 15.8 ? CMD HEM 602 A 1 HETATM 34 C CAD HEM . . . E 5 -1.158 -0.861 33.016 1 14.79 ? CAD HEM 602 A 1 HETATM 35 C CBD HEM . . . E 5 -1.733 0.006 34.122 1 14.42 ? CBD HEM 602 A 1 HETATM 36 C CGD HEM . . . E 5 -3.089 0.532 33.764 1 13.93 ? CGD HEM 602 A 1 HETATM 37 O O1D HEM . . . E 5 -3.407 1.625 34.196 1 14.46 ? O1D HEM 602 A 1 HETATM 38 O O2D HEM . . . E 5 -3.92 -0.172 33.002 1 13.51 ? O2D HEM 602 A 1 HETATM 39 N NA HEM . . . E 5 0.923 -5.503 35.58 1 15.81 ? NA HEM 602 A 1 HETATM 40 N NB HEM . . . E 5 3.544 -6.113 36.383 1 15.8 ? NB HEM 602 A 1 HETATM 41 N NC HEM . . . E 5 4.509 -3.796 34.849 1 16.69 ? NC HEM 602 A 1 HETATM 42 N ND HEM . . . E 5 1.747 -2.922 34.287 1 16.13 ? ND HEM 602 A 1 HETATM 43 FE FE HEM . . . E 5 2.621 -4.432 35.351 1 16.47 ? FE HEM 602 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #