data_4G7R # _model_server_result.job_id YOaVcqgD66ppq0jNmRm9Ig _model_server_result.datetime_utc '2025-03-13 17:54:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4g7r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":602}' # _entry.id 4G7R # _exptl.entry_id 4G7R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 127.79 _cell.angle_gamma 90 _cell.entry_id 4G7R _cell.length_a 143.761 _cell.length_b 98.226 _cell.length_c 94.704 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4G7R _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 79 A HIS 72 1_555 E FE HEM . A HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc2 A ND1 HIS 240 A HIS 233 1_555 D CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc3 A NE2 HIS 289 A HIS 282 1_555 D CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc4 A NE2 HIS 290 A HIS 283 1_555 D CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc5 A NE2 HIS 391 A HIS 384 1_555 F FE HAS . A HAS 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc6 A NE2 HIS 393 A HIS 386 1_555 E FE HEM . A HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc7 D CU CU . A CU 601 1_555 G O2 PER . A PER 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc8 F FE HAS . A HAS 603 1_555 G O1 PER . A PER 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc9 B ND1 HIS 114 B HIS 114 1_555 S CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc10 B SG CYS 149 B CYS 149 1_555 S CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc11 B SG CYS 149 B CYS 149 1_555 S CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc12 B O GLN 151 B GLN 151 1_555 S CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc13 B SG CYS 153 B CYS 153 1_555 S CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc14 B SG CYS 153 B CYS 153 1_555 S CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc15 B ND1 HIS 157 B HIS 157 1_555 S CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc16 B SD MET 160 B MET 160 1_555 S CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 266 n n CHA C4D HEM doub 267 n n CHA HHA HEM sing 268 n n CHB C4A HEM sing 269 n n CHB C1B HEM doub 270 n n CHB HHB HEM sing 271 n n CHC C4B HEM sing 272 n n CHC C1C HEM doub 273 n n CHC HHC HEM sing 274 n n CHD C4C HEM doub 275 n n CHD C1D HEM sing 276 n n CHD HHD HEM sing 277 n n C1A C2A HEM doub 278 n y C1A NA HEM sing 279 n y C2A C3A HEM sing 280 n y C2A CAA HEM sing 281 n n C3A C4A HEM doub 282 n y C3A CMA HEM sing 283 n n C4A NA HEM sing 284 n y CMA HMA HEM sing 285 n n CMA HMAA HEM sing 286 n n CMA HMAB HEM sing 287 n n CAA CBA HEM sing 288 n n CAA HAA HEM sing 289 n n CAA HAAA HEM sing 290 n n CBA CGA HEM sing 291 n n CBA HBA HEM sing 292 n n CBA HBAA HEM sing 293 n n CGA O1A HEM doub 294 n n CGA O2A HEM sing 295 n n C1B C2B HEM sing 296 n n C1B NB HEM sing 297 n n C2B C3B HEM doub 298 n n C2B CMB HEM sing 299 n n C3B C4B HEM sing 300 n n C3B CAB HEM sing 301 n n C4B NB HEM doub 302 n n CMB HMB HEM sing 303 n n CMB HMBA HEM sing 304 n n CMB HMBB HEM sing 305 n n CAB CBB HEM doub 306 n n CAB HAB HEM sing 307 n n CBB HBB HEM sing 308 n n CBB HBBA HEM sing 309 n n C1C C2C HEM sing 310 n y C1C NC HEM sing 311 n y C2C C3C HEM doub 312 n y C2C CMC HEM sing 313 n n C3C C4C HEM sing 314 n y C3C CAC HEM sing 315 n n C4C NC HEM sing 316 n y CMC HMC HEM sing 317 n n CMC HMCA HEM sing 318 n n CMC HMCB HEM sing 319 n n CAC CBC HEM doub 320 n n CAC HAC HEM sing 321 n n CBC HBC HEM sing 322 n n CBC HBCA HEM sing 323 n n C1D C2D HEM sing 324 n n C1D ND HEM doub 325 n n C2D C3D HEM doub 326 n n C2D CMD HEM sing 327 n n C3D C4D HEM sing 328 n n C3D CAD HEM sing 329 n n C4D ND HEM sing 330 n n CMD HMD HEM sing 331 n n CMD HMDA HEM sing 332 n n CMD HMDB HEM sing 333 n n CAD CBD HEM sing 334 n n CAD HAD HEM sing 335 n n CAD HADA HEM sing 336 n n CBD CGD HEM sing 337 n n CBD HBD HEM sing 338 n n CBD HBDA HEM sing 339 n n CGD O1D HEM doub 340 n n CGD O2D HEM sing 341 n n O2A H2A HEM sing 342 n n O2D H2D HEM sing 343 n n FE NA HEM sing 344 n n FE NB HEM sing 345 n n FE NC HEM sing 346 n n FE ND HEM sing 347 n n # _atom_sites.entry_id 4G7R _atom_sites.fract_transf_matrix[1][1] 0.006956 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005394 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010181 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013362 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CU A 1 601 803 CU CU . E 5 HEM A 1 602 800 HEM HEM . F 6 HAS A 1 603 801 HAS HAS . G 7 PER A 1 604 802 PER PER . H 8 OLC A 1 605 1 OLC OLC . I 8 OLC A 1 606 3 OLC OLC . J 8 OLC A 1 607 4 OLC OLC . K 8 OLC A 1 608 8 OLC OLC . L 8 OLC A 1 609 9 OLC OLC . M 8 OLC A 1 610 10 OLC OLC . N 8 OLC A 1 611 11 OLC OLC . O 8 OLC A 1 612 13 OLC OLC . P 8 OLC A 1 613 14 OLC OLC . Q 8 OLC A 1 614 15 OLC OLC . R 8 OLC A 1 615 16 OLC OLC . S 9 CUA B 1 201 802 CUA CUA . T 8 OLC B 1 202 6 OLC OLC . U 8 OLC B 1 203 7 OLC OLC . V 8 OLC C 1 101 2 OLC OLC . W 8 OLC C 1 102 5 OLC OLC . X 10 HOH A 1 701 17 HOH HOH . X 10 HOH A 2 702 18 HOH HOH . X 10 HOH A 3 703 22 HOH HOH . X 10 HOH A 4 704 28 HOH HOH . X 10 HOH A 5 705 33 HOH HOH . X 10 HOH A 6 706 39 HOH HOH . X 10 HOH A 7 707 41 HOH HOH . X 10 HOH A 8 708 47 HOH HOH . X 10 HOH A 9 709 52 HOH HOH . X 10 HOH A 10 710 58 HOH HOH . X 10 HOH A 11 711 67 HOH HOH . X 10 HOH A 12 712 71 HOH HOH . X 10 HOH A 13 713 72 HOH HOH . X 10 HOH A 14 714 76 HOH HOH . X 10 HOH A 15 715 90 HOH HOH . X 10 HOH A 16 716 93 HOH HOH . X 10 HOH A 17 717 97 HOH HOH . X 10 HOH A 18 718 104 HOH HOH . X 10 HOH A 19 719 105 HOH HOH . X 10 HOH A 20 720 126 HOH HOH . X 10 HOH A 21 721 137 HOH HOH . X 10 HOH A 22 722 144 HOH HOH . X 10 HOH A 23 723 145 HOH HOH . X 10 HOH A 24 724 146 HOH HOH . X 10 HOH A 25 725 159 HOH HOH . X 10 HOH A 26 726 160 HOH HOH . X 10 HOH A 27 727 161 HOH HOH . X 10 HOH A 28 728 162 HOH HOH . X 10 HOH A 29 729 166 HOH HOH . X 10 HOH A 30 730 171 HOH HOH . X 10 HOH A 31 731 182 HOH HOH . X 10 HOH A 32 732 183 HOH HOH . X 10 HOH A 33 733 196 HOH HOH . X 10 HOH A 34 734 197 HOH HOH . X 10 HOH A 35 735 198 HOH HOH . X 10 HOH A 36 736 200 HOH HOH . Y 10 HOH B 1 301 40 HOH HOH . Y 10 HOH B 2 302 44 HOH HOH . Y 10 HOH B 3 303 48 HOH HOH . Y 10 HOH B 4 304 54 HOH HOH . Y 10 HOH B 5 305 55 HOH HOH . Y 10 HOH B 6 306 56 HOH HOH . Y 10 HOH B 7 307 62 HOH HOH . Y 10 HOH B 8 308 77 HOH HOH . Y 10 HOH B 9 309 101 HOH HOH . Y 10 HOH B 10 310 118 HOH HOH . Y 10 HOH B 11 311 119 HOH HOH . Y 10 HOH B 12 312 121 HOH HOH . Y 10 HOH B 13 313 142 HOH HOH . Y 10 HOH B 14 314 151 HOH HOH . Y 10 HOH B 15 315 155 HOH HOH . Y 10 HOH B 16 316 172 HOH HOH . Y 10 HOH B 17 317 175 HOH HOH . Y 10 HOH B 18 318 176 HOH HOH . Y 10 HOH B 19 319 180 HOH HOH . Y 10 HOH B 20 320 188 HOH HOH . Y 10 HOH B 21 321 204 HOH HOH . Y 10 HOH B 22 322 205 HOH HOH . Y 10 HOH B 23 323 206 HOH HOH . Z 10 HOH C 1 201 19 HOH HOH . Z 10 HOH C 2 202 36 HOH HOH . Z 10 HOH C 3 203 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 5 -0.491 -25.902 34.531 1 24.52 ? CHA HEM 602 A 1 HETATM 2 C CHB HEM . . . E 5 1.521 -29.803 36.793 1 22.8 ? CHB HEM 602 A 1 HETATM 3 C CHC HEM . . . E 5 5.872 -27.599 36.401 1 25 ? CHC HEM 602 A 1 HETATM 4 C CHD HEM . . . E 5 3.733 -24.225 33.378 1 24.59 ? CHD HEM 602 A 1 HETATM 5 C C1A HEM . . . E 5 -0.264 -27.174 35.28 1 22.66 ? C1A HEM 602 A 1 HETATM 6 C C2A HEM . . . E 5 -1.336 -28.155 35.546 1 22.18 ? C2A HEM 602 A 1 HETATM 7 C C3A HEM . . . E 5 -0.759 -29.237 36.078 1 22.21 ? C3A HEM 602 A 1 HETATM 8 C C4A HEM . . . E 5 0.689 -28.962 36.241 1 22.48 ? C4A HEM 602 A 1 HETATM 9 C CMA HEM . . . E 5 -1.385 -30.587 36.37 1 21.52 ? CMA HEM 602 A 1 HETATM 10 C CAA HEM . . . E 5 -2.696 -27.997 34.932 1 21.9 ? CAA HEM 602 A 1 HETATM 11 C CBA HEM . . . E 5 -3.582 -27.502 36.053 1 23.7 ? CBA HEM 602 A 1 HETATM 12 C CGA HEM . . . E 5 -4.884 -26.972 35.537 1 25.74 ? CGA HEM 602 A 1 HETATM 13 O O1A HEM . . . E 5 -5.768 -26.684 36.351 1 26.6 ? O1A HEM 602 A 1 HETATM 14 O O2A HEM . . . E 5 -5.065 -26.817 34.219 1 28.9 ? O2A HEM 602 A 1 HETATM 15 C C1B HEM . . . E 5 2.976 -29.55 36.831 1 23.84 ? C1B HEM 602 A 1 HETATM 16 C C2B HEM . . . E 5 3.793 -30.373 37.459 1 25.44 ? C2B HEM 602 A 1 HETATM 17 C C3B HEM . . . E 5 5.126 -29.705 37.475 1 26.53 ? C3B HEM 602 A 1 HETATM 18 C C4B HEM . . . E 5 4.918 -28.476 36.671 1 24.84 ? C4B HEM 602 A 1 HETATM 19 C CMB HEM . . . E 5 3.452 -31.703 38.101 1 25.78 ? CMB HEM 602 A 1 HETATM 20 C CAB HEM . . . E 5 6.281 -30.217 37.882 1 27.88 ? CAB HEM 602 A 1 HETATM 21 C CBB HEM . . . E 5 6.589 -30.244 39.362 1 29.71 ? CBB HEM 602 A 1 HETATM 22 C C1C HEM . . . E 5 5.726 -26.58 35.319 1 25.13 ? C1C HEM 602 A 1 HETATM 23 C C2C HEM . . . E 5 6.708 -25.816 34.853 1 24.63 ? C2C HEM 602 A 1 HETATM 24 C C3C HEM . . . E 5 6.033 -24.835 33.978 1 24.84 ? C3C HEM 602 A 1 HETATM 25 C C4C HEM . . . E 5 4.743 -25.094 34.044 1 24.14 ? C4C HEM 602 A 1 HETATM 26 C CMC HEM . . . E 5 8.202 -26 35.013 1 23.66 ? CMC HEM 602 A 1 HETATM 27 C CAC HEM . . . E 5 6.69 -24.046 32.898 1 27.27 ? CAC HEM 602 A 1 HETATM 28 C CBC HEM . . . E 5 7.845 -23.427 33.099 1 28.31 ? CBC HEM 602 A 1 HETATM 29 C C1D HEM . . . E 5 2.439 -24.286 33.648 1 25.42 ? C1D HEM 602 A 1 HETATM 30 C C2D HEM . . . E 5 1.431 -23.288 33.191 1 25.65 ? C2D HEM 602 A 1 HETATM 31 C C3D HEM . . . E 5 0.229 -23.73 33.579 1 26.2 ? C3D HEM 602 A 1 HETATM 32 C C4D HEM . . . E 5 0.47 -25.097 34.141 1 25.3 ? C4D HEM 602 A 1 HETATM 33 C CMD HEM . . . E 5 1.708 -22.245 32.141 1 25.89 ? CMD HEM 602 A 1 HETATM 34 C CAD HEM . . . E 5 -1.132 -23.185 33.15 1 26.33 ? CAD HEM 602 A 1 HETATM 35 C CBD HEM . . . E 5 -1.736 -22.3 34.25 1 28.67 ? CBD HEM 602 A 1 HETATM 36 C CGD HEM . . . E 5 -3.057 -21.642 33.853 1 29.74 ? CGD HEM 602 A 1 HETATM 37 O O1D HEM . . . E 5 -3.348 -20.516 34.302 1 29.53 ? O1D HEM 602 A 1 HETATM 38 O O2D HEM . . . E 5 -3.898 -22.317 33.048 1 29.29 ? O2D HEM 602 A 1 HETATM 39 N NA HEM . . . E 5 0.958 -27.748 35.772 1 23 ? NA HEM 602 A 1 HETATM 40 N NB HEM . . . E 5 3.636 -28.512 36.278 1 23.37 ? NB HEM 602 A 1 HETATM 41 N NC HEM . . . E 5 4.547 -26.241 34.741 1 24.6 ? NC HEM 602 A 1 HETATM 42 N ND HEM . . . E 5 1.787 -25.315 34.21 1 25.18 ? ND HEM 602 A 1 HETATM 43 FE FE HEM . . . E 5 2.651 -26.751 35.351 1 23.5 ? FE HEM 602 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #