data_4G7Y # _model_server_result.job_id L5uQF2Kes1XIeWWClasnaw _model_server_result.datetime_utc '2025-02-03 14:08:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4g7y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 4G7Y # _exptl.entry_id 4G7Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4G7Y _cell.length_a 121.01 _cell.length_b 121.01 _cell.length_c 229.57 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4G7Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf2 A SG CYS 146 H CYS 146 1_555 A SG CYS 202 H CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 B SG CYS 23 L CYS 23 1_555 B SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? disulf ? disulf4 B SG CYS 134 L CYS 134 1_555 B SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc1 G O HOH . H HOH 302 1_555 E MG MG . L MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc2 G O HOH . H HOH 303 1_555 E MG MG . L MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc3 G O HOH . H HOH 304 1_555 E MG MG . L MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc4 G O HOH . H HOH 305 1_555 E MG MG . L MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc5 E MG MG . L MG 302 1_555 H O HOH . L HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 173 n n N1 CM1 LDA sing 174 n n N1 CM2 LDA sing 175 n n N1 C1 LDA sing 176 n n CM1 HM11 LDA sing 177 n n CM1 HM12 LDA sing 178 n n CM1 HM13 LDA sing 179 n n CM2 HM21 LDA sing 180 n n CM2 HM22 LDA sing 181 n n CM2 HM23 LDA sing 182 n n C1 C2 LDA sing 183 n n C1 H11 LDA sing 184 n n C1 H12 LDA sing 185 n n C2 C3 LDA sing 186 n n C2 H21 LDA sing 187 n n C2 H22 LDA sing 188 n n C3 C4 LDA sing 189 n n C3 H31 LDA sing 190 n n C3 H32 LDA sing 191 n n C4 C5 LDA sing 192 n n C4 H41 LDA sing 193 n n C4 H42 LDA sing 194 n n C5 C6 LDA sing 195 n n C5 H51 LDA sing 196 n n C5 H52 LDA sing 197 n n C6 C7 LDA sing 198 n n C6 H61 LDA sing 199 n n C6 H62 LDA sing 200 n n C7 C8 LDA sing 201 n n C7 H71 LDA sing 202 n n C7 H72 LDA sing 203 n n C8 C9 LDA sing 204 n n C8 H81 LDA sing 205 n n C8 H82 LDA sing 206 n n C9 C10 LDA sing 207 n n C9 H91 LDA sing 208 n n C9 H92 LDA sing 209 n n C10 C11 LDA sing 210 n n C10 H101 LDA sing 211 n n C10 H102 LDA sing 212 n n C11 C12 LDA sing 213 n n C11 H111 LDA sing 214 n n C11 H112 LDA sing 215 n n C12 H121 LDA sing 216 n n C12 H122 LDA sing 217 n n C12 H123 LDA sing 218 n n # _atom_sites.entry_id 4G7Y _atom_sites.fract_transf_matrix[1][1] 0.008264 _atom_sites.fract_transf_matrix[1][2] 0.004771 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009542 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004356 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CL L 1 301 1 CL CL . E 5 MG L 1 302 2 MG MG . F 6 LDA S 1 301 1 LDA LDA . G 7 HOH H 1 301 1 HOH HOH . G 7 HOH H 2 302 12 HOH HOH . G 7 HOH H 3 303 13 HOH HOH . G 7 HOH H 4 304 14 HOH HOH . G 7 HOH H 5 305 15 HOH HOH . G 7 HOH H 6 306 20 HOH HOH . G 7 HOH H 7 307 22 HOH HOH . G 7 HOH H 8 308 23 HOH HOH . G 7 HOH H 9 309 24 HOH HOH . G 7 HOH H 10 310 33 HOH HOH . H 7 HOH L 1 401 3 HOH HOH . H 7 HOH L 2 402 4 HOH HOH . H 7 HOH L 3 403 5 HOH HOH . H 7 HOH L 4 404 6 HOH HOH . H 7 HOH L 5 405 7 HOH HOH . H 7 HOH L 6 406 8 HOH HOH . H 7 HOH L 7 407 9 HOH HOH . H 7 HOH L 8 408 10 HOH HOH . H 7 HOH L 9 409 16 HOH HOH . H 7 HOH L 10 410 17 HOH HOH . H 7 HOH L 11 411 18 HOH HOH . H 7 HOH L 12 412 19 HOH HOH . H 7 HOH L 13 413 21 HOH HOH . H 7 HOH L 14 414 26 HOH HOH . H 7 HOH L 15 415 27 HOH HOH . H 7 HOH L 16 416 28 HOH HOH . H 7 HOH L 17 417 29 HOH HOH . H 7 HOH L 18 418 30 HOH HOH . H 7 HOH L 19 419 31 HOH HOH . H 7 HOH L 20 420 34 HOH HOH . H 7 HOH L 21 421 35 HOH HOH . I 7 HOH S 1 401 2 HOH HOH . I 7 HOH S 2 402 11 HOH HOH . I 7 HOH S 3 403 25 HOH HOH . I 7 HOH S 4 404 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . . . F 6 -69.791 35.883 -7.688 1 54.44 ? N1 LDA 301 S 1 HETATM 2 O O1 LDA . . . F 6 -70.083 35.295 -8.798 1 47.84 ? O1 LDA 301 S 1 HETATM 3 C CM1 LDA . . . F 6 -70.07 37.369 -7.659 1 50.91 ? CM1 LDA 301 S 1 HETATM 4 C CM2 LDA . . . F 6 -68.34 35.716 -7.439 1 53.63 ? CM2 LDA 301 S 1 HETATM 5 C C1 LDA . . . F 6 -70.566 35.24 -6.583 1 48.63 ? C1 LDA 301 S 1 HETATM 6 C C2 LDA . . . F 6 -70.345 33.716 -6.443 1 42.72 ? C2 LDA 301 S 1 HETATM 7 C C3 LDA . . . F 6 -71.063 33.234 -5.164 1 41.62 ? C3 LDA 301 S 1 HETATM 8 C C4 LDA . . . F 6 -71.243 31.719 -5.044 1 36.96 ? C4 LDA 301 S 1 HETATM 9 C C5 LDA . . . F 6 -72.117 31.353 -3.85 1 33.89 ? C5 LDA 301 S 1 HETATM 10 C C6 LDA . . . F 6 -71.991 29.864 -3.608 1 36.58 ? C6 LDA 301 S 1 HETATM 11 C C7 LDA . . . F 6 -73.224 29.233 -2.93 1 40.76 ? C7 LDA 301 S 1 HETATM 12 C C8 LDA . . . F 6 -73.325 29.65 -1.466 1 44.2 ? C8 LDA 301 S 1 HETATM 13 C C9 LDA . . . F 6 -74.167 28.727 -0.584 1 43.68 ? C9 LDA 301 S 1 HETATM 14 C C10 LDA . . . F 6 -73.491 28.535 0.789 1 44.11 ? C10 LDA 301 S 1 HETATM 15 C C11 LDA . . . F 6 -74.513 28.323 1.904 1 46.88 ? C11 LDA 301 S 1 HETATM 16 C C12 LDA . . . F 6 -74.292 26.946 2.507 1 47.25 ? C12 LDA 301 S 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 16 #