data_4G84 # _model_server_result.job_id 8fxZI0oHDQXTE4N0kcoDXg _model_server_result.datetime_utc '2025-03-21 20:15:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4g84 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 4G84 # _exptl.entry_id 4G84 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4G84 _cell.length_a 93.519 _cell.length_b 93.519 _cell.length_c 254.533 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4G84 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 173 n y N1 C5 IMD sing 174 n y N1 HN1 IMD sing 175 n n C2 N3 IMD doub 176 n y C2 H2 IMD sing 177 n n N3 C4 IMD sing 178 n y N3 HN3 IMD sing 179 n n C4 C5 IMD doub 180 n y C4 H4 IMD sing 181 n n C5 H5 IMD sing 182 n n # _atom_sites.entry_id 4G84 _atom_sites.fract_transf_matrix[1][1] 0.010693 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010693 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003929 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IMD A 1 1001 1001 IMD IMD . D 2 IMD B 1 1001 1001 IMD IMD . E 2 IMD B 1 1002 1002 IMD IMD . F 3 CL B 1 1003 1 CL CL . G 4 HOH A 1 1101 3 HOH HOH . G 4 HOH A 2 1102 6 HOH HOH . G 4 HOH A 3 1103 7 HOH HOH . G 4 HOH A 4 1104 12 HOH HOH . G 4 HOH A 5 1105 16 HOH HOH . G 4 HOH A 6 1106 17 HOH HOH . G 4 HOH A 7 1107 18 HOH HOH . G 4 HOH A 8 1108 19 HOH HOH . G 4 HOH A 9 1109 21 HOH HOH . G 4 HOH A 10 1110 24 HOH HOH . G 4 HOH A 11 1111 26 HOH HOH . G 4 HOH A 12 1112 27 HOH HOH . G 4 HOH A 13 1113 29 HOH HOH . G 4 HOH A 14 1114 32 HOH HOH . G 4 HOH A 15 1115 35 HOH HOH . G 4 HOH A 16 1116 36 HOH HOH . G 4 HOH A 17 1117 37 HOH HOH . G 4 HOH A 18 1118 38 HOH HOH . G 4 HOH A 19 1119 40 HOH HOH . G 4 HOH A 20 1120 41 HOH HOH . G 4 HOH A 21 1121 42 HOH HOH . G 4 HOH A 22 1122 48 HOH HOH . G 4 HOH A 23 1123 50 HOH HOH . G 4 HOH A 24 1124 51 HOH HOH . G 4 HOH A 25 1125 55 HOH HOH . G 4 HOH A 26 1126 56 HOH HOH . G 4 HOH A 27 1127 57 HOH HOH . G 4 HOH A 28 1128 60 HOH HOH . G 4 HOH A 29 1129 61 HOH HOH . G 4 HOH A 30 1130 62 HOH HOH . G 4 HOH A 31 1131 64 HOH HOH . G 4 HOH A 32 1132 66 HOH HOH . G 4 HOH A 33 1133 68 HOH HOH . G 4 HOH A 34 1134 70 HOH HOH . G 4 HOH A 35 1135 71 HOH HOH . G 4 HOH A 36 1136 72 HOH HOH . G 4 HOH A 37 1137 75 HOH HOH . G 4 HOH A 38 1138 76 HOH HOH . G 4 HOH A 39 1139 78 HOH HOH . G 4 HOH A 40 1140 79 HOH HOH . G 4 HOH A 41 1141 83 HOH HOH . G 4 HOH A 42 1142 86 HOH HOH . G 4 HOH A 43 1143 87 HOH HOH . G 4 HOH A 44 1144 89 HOH HOH . G 4 HOH A 45 1145 93 HOH HOH . G 4 HOH A 46 1146 95 HOH HOH . G 4 HOH A 47 1147 96 HOH HOH . G 4 HOH A 48 1148 97 HOH HOH . G 4 HOH A 49 1149 99 HOH HOH . G 4 HOH A 50 1150 102 HOH HOH . G 4 HOH A 51 1151 105 HOH HOH . G 4 HOH A 52 1152 106 HOH HOH . G 4 HOH A 53 1153 107 HOH HOH . G 4 HOH A 54 1154 108 HOH HOH . G 4 HOH A 55 1155 112 HOH HOH . G 4 HOH A 56 1156 114 HOH HOH . G 4 HOH A 57 1157 116 HOH HOH . G 4 HOH A 58 1158 117 HOH HOH . G 4 HOH A 59 1159 118 HOH HOH . G 4 HOH A 60 1160 120 HOH HOH . G 4 HOH A 61 1161 121 HOH HOH . G 4 HOH A 62 1162 123 HOH HOH . G 4 HOH A 63 1163 125 HOH HOH . G 4 HOH A 64 1164 127 HOH HOH . G 4 HOH A 65 1165 129 HOH HOH . G 4 HOH A 66 1166 130 HOH HOH . G 4 HOH A 67 1167 134 HOH HOH . G 4 HOH A 68 1168 135 HOH HOH . G 4 HOH A 69 1169 136 HOH HOH . G 4 HOH A 70 1170 141 HOH HOH . G 4 HOH A 71 1171 142 HOH HOH . G 4 HOH A 72 1172 145 HOH HOH . G 4 HOH A 73 1173 146 HOH HOH . G 4 HOH A 74 1174 150 HOH HOH . G 4 HOH A 75 1175 151 HOH HOH . G 4 HOH A 76 1176 153 HOH HOH . G 4 HOH A 77 1177 156 HOH HOH . G 4 HOH A 78 1178 157 HOH HOH . G 4 HOH A 79 1179 159 HOH HOH . G 4 HOH A 80 1180 162 HOH HOH . G 4 HOH A 81 1181 163 HOH HOH . G 4 HOH A 82 1182 165 HOH HOH . H 4 HOH B 1 1101 1 HOH HOH . H 4 HOH B 2 1102 2 HOH HOH . H 4 HOH B 3 1103 4 HOH HOH . H 4 HOH B 4 1104 5 HOH HOH . H 4 HOH B 5 1105 8 HOH HOH . H 4 HOH B 6 1106 9 HOH HOH . H 4 HOH B 7 1107 10 HOH HOH . H 4 HOH B 8 1108 11 HOH HOH . H 4 HOH B 9 1109 13 HOH HOH . H 4 HOH B 10 1110 14 HOH HOH . H 4 HOH B 11 1111 15 HOH HOH . H 4 HOH B 12 1112 20 HOH HOH . H 4 HOH B 13 1113 22 HOH HOH . H 4 HOH B 14 1114 23 HOH HOH . H 4 HOH B 15 1115 25 HOH HOH . H 4 HOH B 16 1116 28 HOH HOH . H 4 HOH B 17 1117 30 HOH HOH . H 4 HOH B 18 1118 31 HOH HOH . H 4 HOH B 19 1119 33 HOH HOH . H 4 HOH B 20 1120 34 HOH HOH . H 4 HOH B 21 1121 39 HOH HOH . H 4 HOH B 22 1122 43 HOH HOH . H 4 HOH B 23 1123 44 HOH HOH . H 4 HOH B 24 1124 45 HOH HOH . H 4 HOH B 25 1125 46 HOH HOH . H 4 HOH B 26 1126 47 HOH HOH . H 4 HOH B 27 1127 49 HOH HOH . H 4 HOH B 28 1128 52 HOH HOH . H 4 HOH B 29 1129 53 HOH HOH . H 4 HOH B 30 1130 54 HOH HOH . H 4 HOH B 31 1131 58 HOH HOH . H 4 HOH B 32 1132 59 HOH HOH . H 4 HOH B 33 1133 63 HOH HOH . H 4 HOH B 34 1134 65 HOH HOH . H 4 HOH B 35 1135 67 HOH HOH . H 4 HOH B 36 1136 69 HOH HOH . H 4 HOH B 37 1137 73 HOH HOH . H 4 HOH B 38 1138 74 HOH HOH . H 4 HOH B 39 1139 77 HOH HOH . H 4 HOH B 40 1140 80 HOH HOH . H 4 HOH B 41 1141 81 HOH HOH . H 4 HOH B 42 1142 82 HOH HOH . H 4 HOH B 43 1143 84 HOH HOH . H 4 HOH B 44 1144 85 HOH HOH . H 4 HOH B 45 1145 88 HOH HOH . H 4 HOH B 46 1146 90 HOH HOH . H 4 HOH B 47 1147 91 HOH HOH . H 4 HOH B 48 1148 92 HOH HOH . H 4 HOH B 49 1149 94 HOH HOH . H 4 HOH B 50 1150 98 HOH HOH . H 4 HOH B 51 1151 100 HOH HOH . H 4 HOH B 52 1152 101 HOH HOH . H 4 HOH B 53 1153 103 HOH HOH . H 4 HOH B 54 1154 104 HOH HOH . H 4 HOH B 55 1155 109 HOH HOH . H 4 HOH B 56 1156 110 HOH HOH . H 4 HOH B 57 1157 111 HOH HOH . H 4 HOH B 58 1158 113 HOH HOH . H 4 HOH B 59 1159 115 HOH HOH . H 4 HOH B 60 1160 119 HOH HOH . H 4 HOH B 61 1161 122 HOH HOH . H 4 HOH B 62 1162 124 HOH HOH . H 4 HOH B 63 1163 126 HOH HOH . H 4 HOH B 64 1164 128 HOH HOH . H 4 HOH B 65 1165 131 HOH HOH . H 4 HOH B 66 1166 132 HOH HOH . H 4 HOH B 67 1167 133 HOH HOH . H 4 HOH B 68 1168 137 HOH HOH . H 4 HOH B 69 1169 138 HOH HOH . H 4 HOH B 70 1170 139 HOH HOH . H 4 HOH B 71 1171 140 HOH HOH . H 4 HOH B 72 1172 143 HOH HOH . H 4 HOH B 73 1173 144 HOH HOH . H 4 HOH B 74 1174 147 HOH HOH . H 4 HOH B 75 1175 148 HOH HOH . H 4 HOH B 76 1176 149 HOH HOH . H 4 HOH B 77 1177 152 HOH HOH . H 4 HOH B 78 1178 154 HOH HOH . H 4 HOH B 79 1179 155 HOH HOH . H 4 HOH B 80 1180 158 HOH HOH . H 4 HOH B 81 1181 160 HOH HOH . H 4 HOH B 82 1182 161 HOH HOH . H 4 HOH B 83 1183 164 HOH HOH . H 4 HOH B 84 1184 166 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . D 2 -21.169 17.545 -8.908 1 54.26 ? N1 IMD 1001 B 1 HETATM 2 C C2 IMD . . . D 2 -21.071 16.249 -9.285 1 55.15 ? C2 IMD 1001 B 1 HETATM 3 N N3 IMD . . . D 2 -20.935 15.487 -8.178 1 54.15 ? N3 IMD 1001 B 1 HETATM 4 C C4 IMD . . . D 2 -20.946 16.304 -7.101 1 52 ? C4 IMD 1001 B 1 HETATM 5 C C5 IMD . . . D 2 -21.093 17.605 -7.563 1 50.23 ? C5 IMD 1001 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #