data_4G8A # _model_server_result.job_id imB-1MjvXlvOjz8x5KVyXQ _model_server_result.datetime_utc '2024-11-14 19:45:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4g8a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":205}' # _entry.id 4G8A # _exptl.entry_id 4G8A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 228.371 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MYRISTIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.72 _cell.angle_gamma 90 _cell.entry_id 4G8A _cell.length_a 158.038 _cell.length_b 124.68 _cell.length_c 109.14 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4G8A _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 O N N ? 8 U N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 E 1 NAG A 731 NAG 3 n E NAG 2 E 2 NAG A 732 NAG 3 n F NAG 1 F 1 NAG A 761 NAG 3 n F NAG 2 F 2 NAG A 762 NAG 3 n G NAG 1 G 1 NAG B 831 NAG 3 n G NAG 2 G 2 NAG B 832 NAG 3 n H NAG 1 H 1 NAG B 861 NAG 3 n H NAG 2 H 2 NAG B 862 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 27 A CYS 29 1_555 A SG CYS 38 A CYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf2 A SG CYS 279 A CYS 281 1_555 A SG CYS 304 A CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf3 A SG CYS 388 A CYS 390 1_555 A SG CYS 389 A CYS 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? disulf ? disulf4 A SG CYS 581 A CYS 583 1_555 A SG CYS 607 A CYS 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 A SG CYS 583 A CYS 585 1_555 A SG CYS 625 A CYS 627 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 B SG CYS 27 B CYS 29 1_555 B SG CYS 38 B CYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf7 B SG CYS 279 B CYS 281 1_555 B SG CYS 304 B CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf8 B SG CYS 388 B CYS 390 1_555 B SG CYS 389 B CYS 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? disulf ? disulf9 B SG CYS 581 B CYS 583 1_555 B SG CYS 607 B CYS 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf10 B SG CYS 583 B CYS 585 1_555 B SG CYS 625 B CYS 627 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf11 C SG CYS 9 C CYS 25 1_555 C SG CYS 35 C CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf12 C SG CYS 21 C CYS 37 1_555 C SG CYS 132 C CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf13 C SG CYS 79 C CYS 95 1_555 C SG CYS 89 C CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf14 D SG CYS 9 D CYS 25 1_555 D SG CYS 35 D CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf15 D SG CYS 21 D CYS 37 1_555 D SG CYS 132 D CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf16 D SG CYS 79 D CYS 95 1_555 D SG CYS 89 D CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? covale ? covale1 A ND2 ASN 171 A ASN 173 1_555 I C1 NAG . A NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale2 A ND2 ASN 524 A ASN 526 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale3 A ND2 ASN 573 A ASN 575 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 B ND2 ASN 171 B ASN 173 1_555 J C1 NAG . B NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale5 B ND2 ASN 524 B ASN 526 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale6 B ND2 ASN 573 B ASN 575 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale7 C ND2 ASN 98 C ASN 114 1_555 K C1 NAG . C NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale8 L C1 LP4 . C LP4 202 1_555 M O6 LP5 . C LP5 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale9 L O44 LP4 . C LP4 202 1_555 N C1 DAO . C DAO 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale10 L O43 LP4 . C LP4 202 1_555 O C1 MYR . C MYR 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale11 L O6 LP4 . C LP4 202 1_555 P C2 KDO . C KDO 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale12 D ND2 ASN 98 D ASN 114 1_555 Q C1 NAG . D NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale13 R C1 LP4 . D LP4 202 1_555 S O6 LP5 . D LP5 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale14 R O44 LP4 . D LP4 202 1_555 T C1 DAO . D DAO 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale15 R O43 LP4 . D LP4 202 1_555 U C1 MYR . D MYR 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale16 R O6 LP4 . D LP4 202 1_555 V C2 KDO . D KDO 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale17 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale18 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale19 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale20 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? # _chem_comp.formula 'C14 H28 O2' _chem_comp.formula_weight 228.371 _chem_comp.id MYR _chem_comp.mon_nstd_flag . _chem_comp.name 'MYRISTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MYR doub 532 n n C1 O2 MYR sing 533 n n C1 C2 MYR sing 534 n n O2 HO2 MYR sing 535 n n C2 C3 MYR sing 536 n n C2 H21 MYR sing 537 n n C2 H22 MYR sing 538 n n C3 C4 MYR sing 539 n n C3 H31 MYR sing 540 n n C3 H32 MYR sing 541 n n C4 C5 MYR sing 542 n n C4 H41 MYR sing 543 n n C4 H42 MYR sing 544 n n C5 C6 MYR sing 545 n n C5 H51 MYR sing 546 n n C5 H52 MYR sing 547 n n C6 C7 MYR sing 548 n n C6 H61 MYR sing 549 n n C6 H62 MYR sing 550 n n C7 C8 MYR sing 551 n n C7 H71 MYR sing 552 n n C7 H72 MYR sing 553 n n C8 C9 MYR sing 554 n n C8 H81 MYR sing 555 n n C8 H82 MYR sing 556 n n C9 C10 MYR sing 557 n n C9 H91 MYR sing 558 n n C9 H92 MYR sing 559 n n C10 C11 MYR sing 560 n n C10 H101 MYR sing 561 n n C10 H102 MYR sing 562 n n C11 C12 MYR sing 563 n n C11 H111 MYR sing 564 n n C11 H112 MYR sing 565 n n C12 C13 MYR sing 566 n n C12 H121 MYR sing 567 n n C12 H122 MYR sing 568 n n C13 C14 MYR sing 569 n n C13 H131 MYR sing 570 n n C13 H132 MYR sing 571 n n C14 H141 MYR sing 572 n n C14 H142 MYR sing 573 n n C14 H143 MYR sing 574 n n # _atom_sites.entry_id 4G8A _atom_sites.fract_transf_matrix[1][1] 0.006328 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003048 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008021 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01017 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 4 NAG A 1 701 711 NAG NAG . J 4 NAG B 1 701 811 NAG NAG . K 4 NAG C 1 201 751 NAG NAG . L 5 LP4 C 1 202 300 LP4 LP4 . M 6 LP5 C 1 203 301 LP5 LP5 . N 7 DAO C 1 204 302 DAO DAO . O 8 MYR C 1 205 303 MYR MYR . P 9 KDO C 1 206 304 KDO KDO . Q 4 NAG D 1 201 851 NAG NAG . R 5 LP4 D 1 202 300 LP4 LP4 . S 6 LP5 D 1 203 301 LP5 LP5 . T 7 DAO D 1 204 302 DAO DAO . U 8 MYR D 1 205 303 MYR MYR . V 9 KDO D 1 206 304 KDO KDO . W 10 HOH A 1 801 1 HOH HOH . W 10 HOH A 2 802 4 HOH HOH . W 10 HOH A 3 803 6 HOH HOH . W 10 HOH A 4 804 8 HOH HOH . W 10 HOH A 5 805 9 HOH HOH . W 10 HOH A 6 806 12 HOH HOH . W 10 HOH A 7 807 19 HOH HOH . W 10 HOH A 8 808 20 HOH HOH . W 10 HOH A 9 809 23 HOH HOH . W 10 HOH A 10 810 24 HOH HOH . W 10 HOH A 11 811 25 HOH HOH . W 10 HOH A 12 812 28 HOH HOH . W 10 HOH A 13 813 32 HOH HOH . W 10 HOH A 14 814 38 HOH HOH . W 10 HOH A 15 815 39 HOH HOH . X 10 HOH B 1 801 2 HOH HOH . X 10 HOH B 2 802 3 HOH HOH . X 10 HOH B 3 803 5 HOH HOH . X 10 HOH B 4 804 7 HOH HOH . X 10 HOH B 5 805 11 HOH HOH . X 10 HOH B 6 806 13 HOH HOH . X 10 HOH B 7 807 14 HOH HOH . X 10 HOH B 8 808 15 HOH HOH . X 10 HOH B 9 809 16 HOH HOH . X 10 HOH B 10 810 17 HOH HOH . X 10 HOH B 11 811 18 HOH HOH . X 10 HOH B 12 812 21 HOH HOH . X 10 HOH B 13 813 26 HOH HOH . X 10 HOH B 14 814 29 HOH HOH . X 10 HOH B 15 815 30 HOH HOH . X 10 HOH B 16 816 31 HOH HOH . X 10 HOH B 17 817 33 HOH HOH . X 10 HOH B 18 818 34 HOH HOH . X 10 HOH B 19 819 35 HOH HOH . X 10 HOH B 20 820 36 HOH HOH . X 10 HOH B 21 821 37 HOH HOH . Y 10 HOH D 1 301 10 HOH HOH . Y 10 HOH D 2 302 22 HOH HOH . Y 10 HOH D 3 303 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MYR . . . U 8 -25.27 -15.793 -14.555 1 50.87 ? C1 MYR 205 D 1 HETATM 2 O O2 MYR . . . U 8 -25.297 -15.647 -13.31 1 55.83 ? O2 MYR 205 D 1 HETATM 3 C C2 MYR . . . U 8 -24.242 -15.023 -15.339 1 49.28 ? C2 MYR 205 D 1 HETATM 4 C C3 MYR . . . U 8 -23.629 -13.991 -14.411 1 49.13 ? C3 MYR 205 D 1 HETATM 5 C C4 MYR . . . U 8 -22.116 -14.031 -14.521 1 50.38 ? C4 MYR 205 D 1 HETATM 6 C C5 MYR . . . U 8 -21.461 -14.26 -13.169 1 50.83 ? C5 MYR 205 D 1 HETATM 7 C C6 MYR . . . U 8 -20.123 -14.956 -13.39 1 52.18 ? C6 MYR 205 D 1 HETATM 8 C C7 MYR . . . U 8 -19.128 -14.635 -12.282 1 55.1 ? C7 MYR 205 D 1 HETATM 9 C C8 MYR . . . U 8 -18.438 -15.902 -11.795 1 54.18 ? C8 MYR 205 D 1 HETATM 10 C C9 MYR . . . U 8 -19 -16.342 -10.446 1 51.83 ? C9 MYR 205 D 1 HETATM 11 C C10 MYR . . . U 8 -17.853 -16.63 -9.491 1 50.45 ? C10 MYR 205 D 1 HETATM 12 C C11 MYR . . . U 8 -18.308 -16.535 -8.047 1 46.79 ? C11 MYR 205 D 1 HETATM 13 C C12 MYR . . . U 8 -17.971 -17.809 -7.293 1 41.26 ? C12 MYR 205 D 1 HETATM 14 C C13 MYR . . . U 8 -17.869 -17.468 -5.82 1 42.64 ? C13 MYR 205 D 1 HETATM 15 C C14 MYR . . . U 8 -18.67 -18.407 -4.948 1 42.21 ? C14 MYR 205 D 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #