data_4G8A # _model_server_result.job_id m5Si_WGhXnEGPQWkahzgtQ _model_server_result.datetime_utc '2024-11-29 04:02:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4g8a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":701}' # _entry.id 4G8A # _exptl.entry_id 4G8A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.72 _cell.angle_gamma 90 _cell.entry_id 4G8A _cell.length_a 158.038 _cell.length_b 124.68 _cell.length_c 109.14 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4G8A _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 J N N ? 4 K N N ? 4 Q N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 E 1 NAG A 731 NAG 3 n E NAG 2 E 2 NAG A 732 NAG 3 n F NAG 1 F 1 NAG A 761 NAG 3 n F NAG 2 F 2 NAG A 762 NAG 3 n G NAG 1 G 1 NAG B 831 NAG 3 n G NAG 2 G 2 NAG B 832 NAG 3 n H NAG 1 H 1 NAG B 861 NAG 3 n H NAG 2 H 2 NAG B 862 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 27 A CYS 29 1_555 A SG CYS 38 A CYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf2 A SG CYS 279 A CYS 281 1_555 A SG CYS 304 A CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf3 A SG CYS 388 A CYS 390 1_555 A SG CYS 389 A CYS 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? disulf ? disulf4 A SG CYS 581 A CYS 583 1_555 A SG CYS 607 A CYS 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 A SG CYS 583 A CYS 585 1_555 A SG CYS 625 A CYS 627 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 B SG CYS 27 B CYS 29 1_555 B SG CYS 38 B CYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf7 B SG CYS 279 B CYS 281 1_555 B SG CYS 304 B CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf8 B SG CYS 388 B CYS 390 1_555 B SG CYS 389 B CYS 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? disulf ? disulf9 B SG CYS 581 B CYS 583 1_555 B SG CYS 607 B CYS 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf10 B SG CYS 583 B CYS 585 1_555 B SG CYS 625 B CYS 627 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf11 C SG CYS 9 C CYS 25 1_555 C SG CYS 35 C CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf12 C SG CYS 21 C CYS 37 1_555 C SG CYS 132 C CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf13 C SG CYS 79 C CYS 95 1_555 C SG CYS 89 C CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf14 D SG CYS 9 D CYS 25 1_555 D SG CYS 35 D CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf15 D SG CYS 21 D CYS 37 1_555 D SG CYS 132 D CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf16 D SG CYS 79 D CYS 95 1_555 D SG CYS 89 D CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? covale ? covale1 A ND2 ASN 171 A ASN 173 1_555 I C1 NAG . A NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale2 A ND2 ASN 524 A ASN 526 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale3 A ND2 ASN 573 A ASN 575 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 B ND2 ASN 171 B ASN 173 1_555 J C1 NAG . B NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale5 B ND2 ASN 524 B ASN 526 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale6 B ND2 ASN 573 B ASN 575 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale7 C ND2 ASN 98 C ASN 114 1_555 K C1 NAG . C NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale8 L C1 LP4 . C LP4 202 1_555 M O6 LP5 . C LP5 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale9 L O44 LP4 . C LP4 202 1_555 N C1 DAO . C DAO 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale10 L O43 LP4 . C LP4 202 1_555 O C1 MYR . C MYR 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale11 L O6 LP4 . C LP4 202 1_555 P C2 KDO . C KDO 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale12 D ND2 ASN 98 D ASN 114 1_555 Q C1 NAG . D NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale13 R C1 LP4 . D LP4 202 1_555 S O6 LP5 . D LP5 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale14 R O44 LP4 . D LP4 202 1_555 T C1 DAO . D DAO 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale15 R O43 LP4 . D LP4 202 1_555 U C1 MYR . D MYR 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale16 R O6 LP4 . D LP4 202 1_555 V C2 KDO . D KDO 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale17 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale18 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale19 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale20 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 575 n n C1 O1 NAG sing 576 n n C1 O5 NAG sing 577 n n C1 H1 NAG sing 578 n n C2 C3 NAG sing 579 n n C2 N2 NAG sing 580 n n C2 H2 NAG sing 581 n n C3 C4 NAG sing 582 n n C3 O3 NAG sing 583 n n C3 H3 NAG sing 584 n n C4 C5 NAG sing 585 n n C4 O4 NAG sing 586 n n C4 H4 NAG sing 587 n n C5 C6 NAG sing 588 n n C5 O5 NAG sing 589 n n C5 H5 NAG sing 590 n n C6 O6 NAG sing 591 n n C6 H61 NAG sing 592 n n C6 H62 NAG sing 593 n n C7 C8 NAG sing 594 n n C7 N2 NAG sing 595 n n C7 O7 NAG doub 596 n n C8 H81 NAG sing 597 n n C8 H82 NAG sing 598 n n C8 H83 NAG sing 599 n n N2 HN2 NAG sing 600 n n O1 HO1 NAG sing 601 n n O3 HO3 NAG sing 602 n n O4 HO4 NAG sing 603 n n O6 HO6 NAG sing 604 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4G8A _atom_sites.fract_transf_matrix[1][1] 0.006328 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003048 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008021 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01017 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 4 NAG A 1 701 711 NAG NAG . J 4 NAG B 1 701 811 NAG NAG . K 4 NAG C 1 201 751 NAG NAG . L 5 LP4 C 1 202 300 LP4 LP4 . M 6 LP5 C 1 203 301 LP5 LP5 . N 7 DAO C 1 204 302 DAO DAO . O 8 MYR C 1 205 303 MYR MYR . P 9 KDO C 1 206 304 KDO KDO . Q 4 NAG D 1 201 851 NAG NAG . R 5 LP4 D 1 202 300 LP4 LP4 . S 6 LP5 D 1 203 301 LP5 LP5 . T 7 DAO D 1 204 302 DAO DAO . U 8 MYR D 1 205 303 MYR MYR . V 9 KDO D 1 206 304 KDO KDO . W 10 HOH A 1 801 1 HOH HOH . W 10 HOH A 2 802 4 HOH HOH . W 10 HOH A 3 803 6 HOH HOH . W 10 HOH A 4 804 8 HOH HOH . W 10 HOH A 5 805 9 HOH HOH . W 10 HOH A 6 806 12 HOH HOH . W 10 HOH A 7 807 19 HOH HOH . W 10 HOH A 8 808 20 HOH HOH . W 10 HOH A 9 809 23 HOH HOH . W 10 HOH A 10 810 24 HOH HOH . W 10 HOH A 11 811 25 HOH HOH . W 10 HOH A 12 812 28 HOH HOH . W 10 HOH A 13 813 32 HOH HOH . W 10 HOH A 14 814 38 HOH HOH . W 10 HOH A 15 815 39 HOH HOH . X 10 HOH B 1 801 2 HOH HOH . X 10 HOH B 2 802 3 HOH HOH . X 10 HOH B 3 803 5 HOH HOH . X 10 HOH B 4 804 7 HOH HOH . X 10 HOH B 5 805 11 HOH HOH . X 10 HOH B 6 806 13 HOH HOH . X 10 HOH B 7 807 14 HOH HOH . X 10 HOH B 8 808 15 HOH HOH . X 10 HOH B 9 809 16 HOH HOH . X 10 HOH B 10 810 17 HOH HOH . X 10 HOH B 11 811 18 HOH HOH . X 10 HOH B 12 812 21 HOH HOH . X 10 HOH B 13 813 26 HOH HOH . X 10 HOH B 14 814 29 HOH HOH . X 10 HOH B 15 815 30 HOH HOH . X 10 HOH B 16 816 31 HOH HOH . X 10 HOH B 17 817 33 HOH HOH . X 10 HOH B 18 818 34 HOH HOH . X 10 HOH B 19 819 35 HOH HOH . X 10 HOH B 20 820 36 HOH HOH . X 10 HOH B 21 821 37 HOH HOH . Y 10 HOH D 1 301 10 HOH HOH . Y 10 HOH D 2 302 22 HOH HOH . Y 10 HOH D 3 303 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . I 4 -22.233 -8.552 -95.394 1 96.77 ? C1 NAG 701 A 1 HETATM 2 C C2 NAG . . . I 4 -23.173 -7.999 -96.472 1 101.34 ? C2 NAG 701 A 1 HETATM 3 C C3 NAG . . . I 4 -22.401 -7.838 -97.789 1 104.16 ? C3 NAG 701 A 1 HETATM 4 C C4 NAG . . . I 4 -21.066 -7.105 -97.589 1 105.33 ? C4 NAG 701 A 1 HETATM 5 C C5 NAG . . . I 4 -20.271 -7.63 -96.381 1 101.1 ? C5 NAG 701 A 1 HETATM 6 C C6 NAG . . . I 4 -19.053 -6.742 -96.123 1 96.34 ? C6 NAG 701 A 1 HETATM 7 C C7 NAG . . . I 4 -25.602 -8.54 -96.374 1 101.43 ? C7 NAG 701 A 1 HETATM 8 C C8 NAG . . . I 4 -26.627 -9.625 -96.568 1 99.32 ? C8 NAG 701 A 1 HETATM 9 N N2 NAG . . . I 4 -24.329 -8.882 -96.61 1 101.8 ? N2 NAG 701 A 1 HETATM 10 O O3 NAG . . . I 4 -23.176 -7.141 -98.742 1 101.02 ? O3 NAG 701 A 1 HETATM 11 O O4 NAG . . . I 4 -20.287 -7.199 -98.767 1 108.24 ? O4 NAG 701 A 1 HETATM 12 O O5 NAG . . . I 4 -21.104 -7.7 -95.228 1 99.87 ? O5 NAG 701 A 1 HETATM 13 O O6 NAG . . . I 4 -18.54 -6.949 -94.83 1 90.56 ? O6 NAG 701 A 1 HETATM 14 O O7 NAG . . . I 4 -25.963 -7.415 -96.02 1 101.66 ? O7 NAG 701 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #