data_4G8L
#
_model_server_result.job_id            34k6pvqxXa_coA0AEVfQew 
_model_server_result.datetime_utc      '2024-11-22 21:08:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4g8l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":401}' 
#
_entry.id    4G8L 
#
_exptl.entry_id    4G8L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              1005.633 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-O-MONOPHOSPHORYLADENYLYL(2'->5')ADENYLYL(2'->5')ADENOSINE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.2 
_cell.angle_gamma         90 
_cell.entry_id            4G8L 
_cell.length_a            62.98 
_cell.length_b            164.11 
_cell.length_c            86.22 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4G8L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
PISA monomeric 1 software_defined_assembly 3 
PISA monomeric 1 software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E 1 1 
B,F 2 1 
C,G 3 1 
D,H 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C30 H38 N15 O19 P3' 
_chem_comp.formula_weight    1005.633 
_chem_comp.id                25A 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-O-MONOPHOSPHORYLADENYLYL(2'->5')ADENYLYL(2'->5')ADENOSINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1P P 25A sing 1 n n 
O1P H1P 25A sing 2 n n 
P O2P 25A sing 3 n n 
P O3P 25A doub 4 n n 
P O5' 25A sing 5 n n 
O2P H2P 25A sing 6 n n 
O5' C5' 25A sing 7 n n 
C5' C4' 25A sing 8 n n 
C5' "H5'1" 25A sing 9 n n 
C5' "H5'2" 25A sing 10 n n 
C4' O4' 25A sing 11 n n 
C4' C3' 25A sing 12 n n 
C4' H4' 25A sing 13 n n 
O4' C1' 25A sing 14 n n 
C1' C2' 25A sing 15 n n 
C1' N9 25A sing 16 n n 
C1' H1' 25A sing 17 n n 
C2' O2' 25A sing 18 n n 
C2' C3' 25A sing 19 n n 
C2' H2' 25A sing 20 n n 
O2' P1 25A sing 21 n n 
C3' O3' 25A sing 22 n n 
C3' H3' 25A sing 23 n n 
O3' H2 25A sing 24 n n 
N9 C8 25A sing 25 n y 
N9 C4 25A sing 26 n y 
C8 N7 25A doub 27 n y 
C8 H8 25A sing 28 n n 
N7 C5 25A sing 29 n y 
C5 C6 25A sing 30 n y 
C5 C4 25A doub 31 n y 
C6 N6 25A sing 32 n n 
C6 N1 25A doub 33 n y 
N6 HN61 25A sing 34 n n 
N6 HN62 25A sing 35 n n 
C4 N3 25A sing 36 n y 
N3 C2 25A doub 37 n y 
C2 N1 25A sing 38 n y 
C2 H3 25A sing 39 n n 
P1 OBP 25A sing 40 n n 
P1 OCP 25A doub 41 n n 
P1 OF' 25A sing 42 n n 
OBP H11P 25A sing 43 n n 
OF' CF' 25A sing 44 n n 
CF' CE' 25A sing 45 n n 
CF' H151 25A sing 46 n n 
CF' H152 25A sing 47 n n 
CE' OE' 25A sing 48 n n 
CE' CD' 25A sing 49 n n 
CE' H14' 25A sing 50 n n 
OE' CB' 25A sing 51 n n 
CB' N19 25A sing 52 n n 
CB' CC' 25A sing 53 n n 
CB' H11' 25A sing 54 n n 
N19 C18 25A sing 55 n y 
N19 C14 25A sing 56 n y 
C18 N17 25A doub 57 n y 
C18 H18 25A sing 58 n n 
N17 C15 25A sing 59 n y 
C15 C14 25A doub 60 n y 
C15 C16 25A sing 61 n y 
C14 N13 25A sing 62 n y 
N13 C12 25A doub 63 n y 
C12 N11 25A sing 64 n y 
C12 H12 25A sing 65 n n 
N11 C16 25A doub 66 n y 
C16 N16 25A sing 67 n n 
N16 H161 25A sing 68 n n 
N16 H162 25A sing 69 n n 
CC' OC' 25A sing 70 n n 
CC' CD' 25A sing 71 n n 
CC' H12' 25A sing 72 n n 
OC' P2 25A sing 73 n n 
CD' OD' 25A sing 74 n n 
CD' H13' 25A sing 75 n n 
OD' H1 25A sing 76 n n 
P2 OLP 25A sing 77 n n 
P2 OMP 25A doub 78 n n 
P2 OP' 25A sing 79 n n 
OLP H21P 25A sing 80 n n 
OP' CP' 25A sing 81 n n 
CP' CO' 25A sing 82 n n 
CP' H251 25A sing 83 n n 
CP' H252 25A sing 84 n n 
CO' OO' 25A sing 85 n n 
CO' CN' 25A sing 86 n n 
CO' H24' 25A sing 87 n n 
OO' CL' 25A sing 88 n n 
CL' N29 25A sing 89 n n 
CL' CM' 25A sing 90 n n 
CL' H21' 25A sing 91 n n 
N29 C28 25A sing 92 n y 
N29 C24 25A sing 93 n y 
C28 N27 25A doub 94 n y 
C28 H28 25A sing 95 n n 
N27 C25 25A sing 96 n y 
C25 C24 25A doub 97 n y 
C25 C26 25A sing 98 n y 
C24 N23 25A sing 99 n y 
N23 C22 25A doub 100 n y 
C22 N21 25A sing 101 n y 
C22 H22 25A sing 102 n n 
N21 C26 25A doub 103 n y 
C26 N26 25A sing 104 n n 
N26 H261 25A sing 105 n n 
N26 H262 25A sing 106 n n 
CM' OM' 25A sing 107 n n 
CM' CN' 25A sing 108 n n 
CM' H22' 25A sing 109 n n 
OM' H5 25A sing 110 n n 
CN' ON' 25A sing 111 n n 
CN' H23' 25A sing 112 n n 
ON' H4 25A sing 113 n n 
#
_atom_sites.entry_id                     4G8L 
_atom_sites.fract_transf_matrix[1][1]    0.015878 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002858 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006093 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011785 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 25A A 1 401 1996 25A 25A . 
F 2 25A B 1 401 1996 25A 25A . 
G 2 25A C 1 401 1996 25A 25A . 
H 2 25A D 1 401 1996 25A 25A . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1P 25A . . . F 2 9.656 -66.157 28.984 1 67.39 ? O1P 25A 401 B 1 
HETATM 2 P P 25A . . . F 2 9.021 -67.143 29.923 1 66.35 ? P 25A 401 B 1 
HETATM 3 O O2P 25A . . . F 2 9.707 -68.554 29.807 1 52.71 ? O2P 25A 401 B 1 
HETATM 4 O O3P 25A . . . F 2 9.073 -66.576 31.373 1 38.47 ? O3P 25A 401 B 1 
HETATM 5 O O5' 25A . . . F 2 7.558 -67.269 29.495 1 67.14 ? O5' 25A 401 B 1 
HETATM 6 C C5' 25A . . . F 2 7.216 -67.746 28.25 1 59.07 ? C5' 25A 401 B 1 
HETATM 7 C C4' 25A . . . F 2 5.749 -67.501 27.923 1 64.5 ? C4' 25A 401 B 1 
HETATM 8 O O4' 25A . . . F 2 4.7 -68.173 28.729 1 58.17 ? O4' 25A 401 B 1 
HETATM 9 C C1' 25A . . . F 2 3.664 -67.116 29.025 1 50.99 ? C1' 25A 401 B 1 
HETATM 10 C C2' 25A . . . F 2 3.835 -66.214 27.824 1 57.88 ? C2' 25A 401 B 1 
HETATM 11 O O2' 25A . . . F 2 3.164 -66.502 26.619 1 56.38 ? O2' 25A 401 B 1 
HETATM 12 C C3' 25A . . . F 2 5.297 -66.052 27.781 1 61.57 ? C3' 25A 401 B 1 
HETATM 13 O O3' 25A . . . F 2 5.864 -65.267 26.798 1 74.22 ? O3' 25A 401 B 1 
HETATM 14 N N9 25A . . . F 2 3.625 -67.305 30.45 1 43.58 ? N9 25A 401 B 1 
HETATM 15 C C8 25A . . . F 2 4.116 -66.411 31.393 1 54.64 ? C8 25A 401 B 1 
HETATM 16 N N7 25A . . . F 2 4 -67.061 32.755 1 45.96 ? N7 25A 401 B 1 
HETATM 17 C C5 25A . . . F 2 3.447 -68.363 32.581 1 49.63 ? C5 25A 401 B 1 
HETATM 18 C C6 25A . . . F 2 3.134 -69.401 33.518 1 57.66 ? C6 25A 401 B 1 
HETATM 19 N N6 25A . . . F 2 3.404 -69.251 34.931 1 56.37 ? N6 25A 401 B 1 
HETATM 20 C C4 25A . . . F 2 3.202 -68.556 31.165 1 49.69 ? C4 25A 401 B 1 
HETATM 21 N N3 25A . . . F 2 2.639 -69.783 30.701 1 55.79 ? N3 25A 401 B 1 
HETATM 22 C C2 25A . . . F 2 2.315 -70.844 31.657 1 59.84 ? C2 25A 401 B 1 
HETATM 23 N N1 25A . . . F 2 2.562 -70.653 33.03 1 49.5 ? N1 25A 401 B 1 
HETATM 24 P P1 25A . . . F 2 1.757 -65.821 26.419 1 61.92 ? P1 25A 401 B 1 
HETATM 25 O OBP 25A . . . F 2 1.672 -64.551 27.357 1 39.85 ? OBP 25A 401 B 1 
HETATM 26 O OCP 25A . . . F 2 1.585 -65.532 24.938 1 52.61 ? OCP 25A 401 B 1 
HETATM 27 O OF' 25A . . . F 2 0.614 -66.782 26.923 1 74.72 ? OF' 25A 401 B 1 
HETATM 28 C CF' 25A . . . F 2 0.647 -68.148 26.576 1 56.07 ? CF' 25A 401 B 1 
HETATM 29 C CE' 25A . . . F 2 -0.421 -68.94 27.294 1 48.04 ? CE' 25A 401 B 1 
HETATM 30 O OE' 25A . . . F 2 -0.109 -69.488 28.662 1 64.66 ? OE' 25A 401 B 1 
HETATM 31 C CB' 25A . . . F 2 -1.323 -69.164 29.497 1 56.38 ? CB' 25A 401 B 1 
HETATM 32 N N19 25A . . . F 2 -0.644 -68.275 30.446 1 42.49 ? N19 25A 401 B 1 
HETATM 33 C C18 25A . . . F 2 -0.06 -67.039 30.103 1 45.79 ? C18 25A 401 B 1 
HETATM 34 N N17 25A . . . F 2 0.448 -66.461 31.335 1 62.8 ? N17 25A 401 B 1 
HETATM 35 C C15 25A . . . F 2 0.148 -67.403 32.483 1 49.81 ? C15 25A 401 B 1 
HETATM 36 C C14 25A . . . F 2 -0.507 -68.5 31.956 1 44.7 ? C14 25A 401 B 1 
HETATM 37 N N13 25A . . . F 2 -0.933 -69.61 32.839 1 39.02 ? N13 25A 401 B 1 
HETATM 38 C C12 25A . . . F 2 -0.678 -69.541 34.177 1 47.16 ? C12 25A 401 B 1 
HETATM 39 N N11 25A . . . F 2 -0.03 -68.446 34.707 1 48.44 ? N11 25A 401 B 1 
HETATM 40 C C16 25A . . . F 2 0.403 -67.338 33.826 1 46.25 ? C16 25A 401 B 1 
HETATM 41 N N16 25A . . . F 2 1.087 -66.214 34.392 1 67.87 ? N16 25A 401 B 1 
HETATM 42 C CC' 25A . . . F 2 -2.467 -68.971 28.487 1 57.62 ? CC' 25A 401 B 1 
HETATM 43 O OC' 25A . . . F 2 -3.349 -70.028 28.224 1 60.69 ? OC' 25A 401 B 1 
HETATM 44 C CD' 25A . . . F 2 -1.835 -68.358 27.302 1 50.52 ? CD' 25A 401 B 1 
HETATM 45 O OD' 25A . . . F 2 -2.596 -68.356 26.139 1 63.5 ? OD' 25A 401 B 1 
HETATM 46 P P2 25A . . . F 2 -4.543 -70.152 29.222 1 68.26 ? P2 25A 401 B 1 
HETATM 47 O OLP 25A . . . F 2 -4.955 -71.659 29.198 1 76.34 ? OLP 25A 401 B 1 
HETATM 48 O OMP 25A . . . F 2 -4.123 -69.663 30.586 1 37.13 ? OMP 25A 401 B 1 
HETATM 49 O OP' 25A . . . F 2 -5.712 -69.205 28.722 1 53.24 ? OP' 25A 401 B 1 
HETATM 50 C CP' 25A . . . F 2 -5.737 -68.825 27.366 1 55.19 ? CP' 25A 401 B 1 
HETATM 51 C CO' 25A . . . F 2 -7.141 -68.412 26.874 1 66.89 ? CO' 25A 401 B 1 
HETATM 52 O OO' 25A . . . F 2 -8.229 -69.308 27.175 1 69.11 ? OO' 25A 401 B 1 
HETATM 53 C CL' 25A . . . F 2 -9.158 -68.599 28.098 1 57.1 ? CL' 25A 401 B 1 
HETATM 54 N N29 25A . . . F 2 -9.825 -69.253 29.235 1 44.05 ? N29 25A 401 B 1 
HETATM 55 C C28 25A . . . F 2 -10.981 -69.976 29.191 1 42.87 ? C28 25A 401 B 1 
HETATM 56 N N27 25A . . . F 2 -11.285 -70.379 30.513 1 43.3 ? N27 25A 401 B 1 
HETATM 57 C C25 25A . . . F 2 -10.318 -69.891 31.34 1 29.06 ? C25 25A 401 B 1 
HETATM 58 C C24 25A . . . F 2 -9.402 -69.181 30.542 1 33.11 ? C24 25A 401 B 1 
HETATM 59 N N23 25A . . . F 2 -8.294 -68.554 31.105 1 37.32 ? N23 25A 401 B 1 
HETATM 60 C C22 25A . . . F 2 -8.088 -68.653 32.537 1 59.9 ? C22 25A 401 B 1 
HETATM 61 N N21 25A . . . F 2 -8.98 -69.353 33.336 1 58.96 ? N21 25A 401 B 1 
HETATM 62 C C26 25A . . . F 2 -10.115 -69.986 32.749 1 48.56 ? C26 25A 401 B 1 
HETATM 63 N N26 25A . . . F 2 -11.027 -70.708 33.592 1 51.4 ? N26 25A 401 B 1 
HETATM 64 C CM' 25A . . . F 2 -8.783 -67.086 28.093 1 70.01 ? CM' 25A 401 B 1 
HETATM 65 O OM' 25A . . . F 2 -9.819 -66.156 28.021 1 75.57 ? OM' 25A 401 B 1 
HETATM 66 C CN' 25A . . . F 2 -7.63 -66.973 27.126 1 72.69 ? CN' 25A 401 B 1 
HETATM 67 O ON' 25A . . . F 2 -7.692 -66.072 26.055 1 87.57 ? ON' 25A 401 B 1 
#
_model_server_stats.io_time_ms              73 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           253 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           67 
#