data_4G8L
#
_model_server_result.job_id            VWjdOYp0sn6z74g3cLwfGA 
_model_server_result.datetime_utc      '2024-10-12 08:28:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4g8l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":401}' 
#
_entry.id    4G8L 
#
_exptl.entry_id    4G8L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              1005.633 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-O-MONOPHOSPHORYLADENYLYL(2'->5')ADENYLYL(2'->5')ADENOSINE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.2 
_cell.angle_gamma         90 
_cell.entry_id            4G8L 
_cell.length_a            62.98 
_cell.length_b            164.11 
_cell.length_c            86.22 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4G8L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
PISA monomeric 1 software_defined_assembly 3 
PISA monomeric 1 software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E 1 1 
B,F 2 1 
C,G 3 1 
D,H 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C30 H38 N15 O19 P3' 
_chem_comp.formula_weight    1005.633 
_chem_comp.id                25A 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-O-MONOPHOSPHORYLADENYLYL(2'->5')ADENYLYL(2'->5')ADENOSINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1P P 25A sing 1 n n 
O1P H1P 25A sing 2 n n 
P O2P 25A sing 3 n n 
P O3P 25A doub 4 n n 
P O5' 25A sing 5 n n 
O2P H2P 25A sing 6 n n 
O5' C5' 25A sing 7 n n 
C5' C4' 25A sing 8 n n 
C5' "H5'1" 25A sing 9 n n 
C5' "H5'2" 25A sing 10 n n 
C4' O4' 25A sing 11 n n 
C4' C3' 25A sing 12 n n 
C4' H4' 25A sing 13 n n 
O4' C1' 25A sing 14 n n 
C1' C2' 25A sing 15 n n 
C1' N9 25A sing 16 n n 
C1' H1' 25A sing 17 n n 
C2' O2' 25A sing 18 n n 
C2' C3' 25A sing 19 n n 
C2' H2' 25A sing 20 n n 
O2' P1 25A sing 21 n n 
C3' O3' 25A sing 22 n n 
C3' H3' 25A sing 23 n n 
O3' H2 25A sing 24 n n 
N9 C8 25A sing 25 n y 
N9 C4 25A sing 26 n y 
C8 N7 25A doub 27 n y 
C8 H8 25A sing 28 n n 
N7 C5 25A sing 29 n y 
C5 C6 25A sing 30 n y 
C5 C4 25A doub 31 n y 
C6 N6 25A sing 32 n n 
C6 N1 25A doub 33 n y 
N6 HN61 25A sing 34 n n 
N6 HN62 25A sing 35 n n 
C4 N3 25A sing 36 n y 
N3 C2 25A doub 37 n y 
C2 N1 25A sing 38 n y 
C2 H3 25A sing 39 n n 
P1 OBP 25A sing 40 n n 
P1 OCP 25A doub 41 n n 
P1 OF' 25A sing 42 n n 
OBP H11P 25A sing 43 n n 
OF' CF' 25A sing 44 n n 
CF' CE' 25A sing 45 n n 
CF' H151 25A sing 46 n n 
CF' H152 25A sing 47 n n 
CE' OE' 25A sing 48 n n 
CE' CD' 25A sing 49 n n 
CE' H14' 25A sing 50 n n 
OE' CB' 25A sing 51 n n 
CB' N19 25A sing 52 n n 
CB' CC' 25A sing 53 n n 
CB' H11' 25A sing 54 n n 
N19 C18 25A sing 55 n y 
N19 C14 25A sing 56 n y 
C18 N17 25A doub 57 n y 
C18 H18 25A sing 58 n n 
N17 C15 25A sing 59 n y 
C15 C14 25A doub 60 n y 
C15 C16 25A sing 61 n y 
C14 N13 25A sing 62 n y 
N13 C12 25A doub 63 n y 
C12 N11 25A sing 64 n y 
C12 H12 25A sing 65 n n 
N11 C16 25A doub 66 n y 
C16 N16 25A sing 67 n n 
N16 H161 25A sing 68 n n 
N16 H162 25A sing 69 n n 
CC' OC' 25A sing 70 n n 
CC' CD' 25A sing 71 n n 
CC' H12' 25A sing 72 n n 
OC' P2 25A sing 73 n n 
CD' OD' 25A sing 74 n n 
CD' H13' 25A sing 75 n n 
OD' H1 25A sing 76 n n 
P2 OLP 25A sing 77 n n 
P2 OMP 25A doub 78 n n 
P2 OP' 25A sing 79 n n 
OLP H21P 25A sing 80 n n 
OP' CP' 25A sing 81 n n 
CP' CO' 25A sing 82 n n 
CP' H251 25A sing 83 n n 
CP' H252 25A sing 84 n n 
CO' OO' 25A sing 85 n n 
CO' CN' 25A sing 86 n n 
CO' H24' 25A sing 87 n n 
OO' CL' 25A sing 88 n n 
CL' N29 25A sing 89 n n 
CL' CM' 25A sing 90 n n 
CL' H21' 25A sing 91 n n 
N29 C28 25A sing 92 n y 
N29 C24 25A sing 93 n y 
C28 N27 25A doub 94 n y 
C28 H28 25A sing 95 n n 
N27 C25 25A sing 96 n y 
C25 C24 25A doub 97 n y 
C25 C26 25A sing 98 n y 
C24 N23 25A sing 99 n y 
N23 C22 25A doub 100 n y 
C22 N21 25A sing 101 n y 
C22 H22 25A sing 102 n n 
N21 C26 25A doub 103 n y 
C26 N26 25A sing 104 n n 
N26 H261 25A sing 105 n n 
N26 H262 25A sing 106 n n 
CM' OM' 25A sing 107 n n 
CM' CN' 25A sing 108 n n 
CM' H22' 25A sing 109 n n 
OM' H5 25A sing 110 n n 
CN' ON' 25A sing 111 n n 
CN' H23' 25A sing 112 n n 
ON' H4 25A sing 113 n n 
#
_atom_sites.entry_id                     4G8L 
_atom_sites.fract_transf_matrix[1][1]    0.015878 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002858 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006093 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011785 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 25A A 1 401 1996 25A 25A . 
F 2 25A B 1 401 1996 25A 25A . 
G 2 25A C 1 401 1996 25A 25A . 
H 2 25A D 1 401 1996 25A 25A . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1P 25A . . . H 2 17.031 -44.267 13.356 1 63.21 ? O1P 25A 401 D 1 
HETATM 2 P P 25A . . . H 2 16.408 -43.275 12.408 1 61.5 ? P 25A 401 D 1 
HETATM 3 O O2P 25A . . . H 2 17.125 -41.875 12.52 1 43.16 ? O2P 25A 401 D 1 
HETATM 4 O O3P 25A . . . H 2 16.451 -43.819 10.947 1 37.65 ? O3P 25A 401 D 1 
HETATM 5 O O5' 25A . . . H 2 14.932 -43.153 12.801 1 62.9 ? O5' 25A 401 D 1 
HETATM 6 C C5' 25A . . . H 2 14.573 -42.693 14.043 1 56.9 ? C5' 25A 401 D 1 
HETATM 7 C C4' 25A . . . H 2 13.122 -42.994 14.38 1 61.03 ? C4' 25A 401 D 1 
HETATM 8 O O4' 25A . . . H 2 12.071 -42.34 13.583 1 54.98 ? O4' 25A 401 D 1 
HETATM 9 C C1' 25A . . . H 2 11.055 -43.402 13.289 1 50.22 ? C1' 25A 401 D 1 
HETATM 10 C C2' 25A . . . H 2 11.232 -44.295 14.49 1 54.28 ? C2' 25A 401 D 1 
HETATM 11 O O2' 25A . . . H 2 10.571 -44.006 15.693 1 52.35 ? O2' 25A 401 D 1 
HETATM 12 C C3' 25A . . . H 2 12.688 -44.446 14.529 1 58.68 ? C3' 25A 401 D 1 
HETATM 13 O O3' 25A . . . H 2 13.249 -45.229 15.517 1 71.22 ? O3' 25A 401 D 1 
HETATM 14 N N9 25A . . . H 2 11.047 -43.211 11.864 1 45.37 ? N9 25A 401 D 1 
HETATM 15 C C8 25A . . . H 2 11.566 -44.093 10.927 1 56.36 ? C8 25A 401 D 1 
HETATM 16 N N7 25A . . . H 2 11.447 -43.455 9.562 1 41.08 ? N7 25A 401 D 1 
HETATM 17 C C5 25A . . . H 2 10.858 -42.172 9.731 1 50.42 ? C5 25A 401 D 1 
HETATM 18 C C6 25A . . . H 2 10.523 -41.149 8.791 1 58.62 ? C6 25A 401 D 1 
HETATM 19 N N6 25A . . . H 2 10.786 -41.326 7.383 1 57.36 ? N6 25A 401 D 1 
HETATM 20 C C4 25A . . . H 2 10.597 -41.975 11.146 1 53.46 ? C4 25A 401 D 1 
HETATM 21 N N3 25A . . . H 2 10 -40.76 11.609 1 56.63 ? N3 25A 401 D 1 
HETATM 22 C C2 25A . . . H 2 9.661 -39.716 10.644 1 60.19 ? C2 25A 401 D 1 
HETATM 23 N N1 25A . . . H 2 9.922 -39.907 9.275 1 52.57 ? N1 25A 401 D 1 
HETATM 24 P P1 25A . . . H 2 9.173 -44.715 15.883 1 68.5 ? P1 25A 401 D 1 
HETATM 25 O OBP 25A . . . H 2 9.111 -45.956 14.911 1 40.79 ? OBP 25A 401 D 1 
HETATM 26 O OCP 25A . . . H 2 9 -45.059 17.351 1 57.23 ? OCP 25A 401 D 1 
HETATM 27 O OF' 25A . . . H 2 8.006 -43.759 15.414 1 77.09 ? OF' 25A 401 D 1 
HETATM 28 C CF' 25A . . . H 2 8.034 -42.382 15.727 1 56.77 ? CF' 25A 401 D 1 
HETATM 29 C CE' 25A . . . H 2 6.952 -41.613 15.005 1 45.05 ? CE' 25A 401 D 1 
HETATM 30 O OE' 25A . . . H 2 7.263 -41.067 13.638 1 61.5 ? OE' 25A 401 D 1 
HETATM 31 C CB' 25A . . . H 2 6.058 -41.395 12.803 1 55.32 ? CB' 25A 401 D 1 
HETATM 32 N N19 25A . . . H 2 6.752 -42.281 11.859 1 38.26 ? N19 25A 401 D 1 
HETATM 33 C C18 25A . . . H 2 7.329 -43.519 12.201 1 42.11 ? C18 25A 401 D 1 
HETATM 34 N N17 25A . . . H 2 7.854 -44.105 10.975 1 57.54 ? N17 25A 401 D 1 
HETATM 35 C C15 25A . . . H 2 7.554 -43.166 9.832 1 48.81 ? C15 25A 401 D 1 
HETATM 36 C C14 25A . . . H 2 6.893 -42.066 10.349 1 45.81 ? C14 25A 401 D 1 
HETATM 37 N N13 25A . . . H 2 6.459 -40.963 9.458 1 40.29 ? N13 25A 401 D 1 
HETATM 38 C C12 25A . . . H 2 6.715 -41.033 8.122 1 46.18 ? C12 25A 401 D 1 
HETATM 39 N N11 25A . . . H 2 7.371 -42.131 7.607 1 50.83 ? N11 25A 401 D 1 
HETATM 40 C C16 25A . . . H 2 7.811 -43.237 8.498 1 51.38 ? C16 25A 401 D 1 
HETATM 41 N N16 25A . . . H 2 8.503 -44.372 7.961 1 71.13 ? N16 25A 401 D 1 
HETATM 42 C CC' 25A . . . H 2 4.912 -41.594 13.817 1 58.98 ? CC' 25A 401 D 1 
HETATM 43 O OC' 25A . . . H 2 4.005 -40.559 14.099 1 52.33 ? OC' 25A 401 D 1 
HETATM 44 C CD' 25A . . . H 2 5.555 -42.217 14.991 1 44.75 ? CD' 25A 401 D 1 
HETATM 45 O OD' 25A . . . H 2 4.794 -42.238 16.148 1 60.99 ? OD' 25A 401 D 1 
HETATM 46 P P2 25A . . . H 2 2.838 -40.443 13.092 1 67.27 ? P2 25A 401 D 1 
HETATM 47 O OLP 25A . . . H 2 2.41 -38.944 13.073 1 76.54 ? OLP 25A 401 D 1 
HETATM 48 O OMP 25A . . . H 2 3.28 -40.948 11.739 1 50.55 ? OMP 25A 401 D 1 
HETATM 49 O OP' 25A . . . H 2 1.682 -41.405 13.584 1 58.24 ? OP' 25A 401 D 1 
HETATM 50 C CP' 25A . . . H 2 1.65 -41.804 14.935 1 55.34 ? CP' 25A 401 D 1 
HETATM 51 C CO' 25A . . . H 2 0.237 -42.223 15.416 1 70.74 ? CO' 25A 401 D 1 
HETATM 52 O OO' 25A . . . H 2 -0.866 -41.343 15.108 1 69.73 ? OO' 25A 401 D 1 
HETATM 53 C CL' 25A . . . H 2 -1.797 -42.07 14.196 1 57.25 ? CL' 25A 401 D 1 
HETATM 54 N N29 25A . . . H 2 -2.468 -41.443 13.046 1 45.52 ? N29 25A 401 D 1 
HETATM 55 C C28 25A . . . H 2 -3.634 -40.735 13.077 1 49.21 ? C28 25A 401 D 1 
HETATM 56 N N27 25A . . . H 2 -3.93 -40.336 11.748 1 53.24 ? N27 25A 401 D 1 
HETATM 57 C C25 25A . . . H 2 -2.939 -40.797 10.925 1 39.45 ? C25 25A 401 D 1 
HETATM 58 C C24 25A . . . H 2 -2.022 -41.495 11.731 1 39.35 ? C24 25A 401 D 1 
HETATM 59 N N23 25A . . . H 2 -0.896 -42.095 11.157 1 42.26 ? N23 25A 401 D 1 
HETATM 60 C C22 25A . . . H 2 -0.681 -41.985 9.73 1 57.63 ? C22 25A 401 D 1 
HETATM 61 N N21 25A . . . H 2 -1.572 -41.293 8.929 1 51.05 ? N21 25A 401 D 1 
HETATM 62 C C26 25A . . . H 2 -2.722 -40.69 9.515 1 52.09 ? C26 25A 401 D 1 
HETATM 63 N N26 25A . . . H 2 -3.662 -40.004 8.664 1 57.24 ? N26 25A 401 D 1 
HETATM 64 C CM' 25A . . . H 2 -1.39 -43.575 14.196 1 72.53 ? CM' 25A 401 D 1 
HETATM 65 O OM' 25A . . . H 2 -2.403 -44.531 14.236 1 82.18 ? OM' 25A 401 D 1 
HETATM 66 C CN' 25A . . . H 2 -0.239 -43.67 15.171 1 73.33 ? CN' 25A 401 D 1 
HETATM 67 O ON' 25A . . . H 2 -0.301 -44.565 16.244 1 88.54 ? ON' 25A 401 D 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    37 
_model_server_stats.query_time_ms           369 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           67 
#