data_4G8S # _model_server_result.job_id cDNrsvnKAKg0u2CjjfJ5kg _model_server_result.datetime_utc '2024-11-24 05:31:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4g8s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":202}' # _entry.id 4G8S # _exptl.entry_id 4G8S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4G8S _cell.length_a 73.759 _cell.length_b 73.759 _cell.length_c 169.472 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4G8S _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 22 A SER 0 1_555 A N MSE 23 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 A C MSE 23 A MSE 1 1_555 A N ASP 24 A ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale3 A C GLN 49 A GLN 27 1_555 A N MSE 50 A MSE 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C MSE 50 A MSE 28 1_555 A N VAL 51 A VAL 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale5 A C ASN 63 A ASN 41 1_555 A N MSE 64 A MSE 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C MSE 64 A MSE 42 1_555 A N GLN 65 A GLN 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 A C TYR 130 A TYR 108 1_555 A N MSE 131 A MSE 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale8 A C MSE 131 A MSE 109 1_555 A N THR 132 A THR 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 A C LEU 141 A LEU 119 1_555 A N MSE 142 A MSE 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale10 A C MSE 142 A MSE 120 1_555 A N LEU 143 A LEU 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 B C SER 22 B SER 0 1_555 B N MSE 23 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale12 B C MSE 23 B MSE 1 1_555 B N ASP 24 B ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 B C GLN 49 B GLN 27 1_555 B N MSE 50 B MSE 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale14 B C MSE 50 B MSE 28 1_555 B N VAL 51 B VAL 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale15 B C ASN 63 B ASN 41 1_555 B N MSE 64 B MSE 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale16 B C MSE 64 B MSE 42 1_555 B N GLN 65 B GLN 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale17 B C TYR 130 B TYR 108 1_555 B N MSE 131 B MSE 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale18 B C MSE 131 B MSE 109 1_555 B N THR 132 B THR 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale19 B C LEU 141 B LEU 119 1_555 B N MSE 142 B MSE 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale20 B C MSE 142 B MSE 120 1_555 B N LEU 143 B LEU 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 183 n n C1 C2 GOL sing 184 n n C1 H11 GOL sing 185 n n C1 H12 GOL sing 186 n n O1 HO1 GOL sing 187 n n C2 O2 GOL sing 188 n n C2 C3 GOL sing 189 n n C2 H2 GOL sing 190 n n O2 HO2 GOL sing 191 n n C3 O3 GOL sing 192 n n C3 H31 GOL sing 193 n n C3 H32 GOL sing 194 n n O3 HO3 GOL sing 195 n n # _atom_sites.entry_id 4G8S _atom_sites.fract_transf_matrix[1][1] 0.013558 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013558 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005901 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 300 300 FMN FMN . D 2 FMN B 1 201 300 FMN FMN . E 3 GOL B 1 202 1 GOL GOL . F 4 HOH A 1 401 1 HOH HOH . F 4 HOH A 2 402 2 HOH HOH . F 4 HOH A 3 403 5 HOH HOH . F 4 HOH A 4 404 6 HOH HOH . F 4 HOH A 5 405 8 HOH HOH . F 4 HOH A 6 406 10 HOH HOH . F 4 HOH A 7 407 12 HOH HOH . F 4 HOH A 8 408 13 HOH HOH . F 4 HOH A 9 409 17 HOH HOH . F 4 HOH A 10 410 21 HOH HOH . F 4 HOH A 11 411 23 HOH HOH . F 4 HOH A 12 412 24 HOH HOH . F 4 HOH A 13 413 25 HOH HOH . F 4 HOH A 14 414 26 HOH HOH . F 4 HOH A 15 415 28 HOH HOH . F 4 HOH A 16 416 30 HOH HOH . F 4 HOH A 17 417 31 HOH HOH . F 4 HOH A 18 418 33 HOH HOH . F 4 HOH A 19 419 34 HOH HOH . F 4 HOH A 20 420 35 HOH HOH . F 4 HOH A 21 421 38 HOH HOH . F 4 HOH A 22 422 41 HOH HOH . F 4 HOH A 23 423 42 HOH HOH . F 4 HOH A 24 424 45 HOH HOH . F 4 HOH A 25 425 46 HOH HOH . F 4 HOH A 26 426 49 HOH HOH . F 4 HOH A 27 427 51 HOH HOH . F 4 HOH A 28 428 52 HOH HOH . F 4 HOH A 29 429 53 HOH HOH . F 4 HOH A 30 430 58 HOH HOH . F 4 HOH A 31 431 59 HOH HOH . F 4 HOH A 32 432 62 HOH HOH . F 4 HOH A 33 433 63 HOH HOH . F 4 HOH A 34 434 66 HOH HOH . F 4 HOH A 35 435 67 HOH HOH . F 4 HOH A 36 436 69 HOH HOH . F 4 HOH A 37 437 71 HOH HOH . F 4 HOH A 38 438 73 HOH HOH . F 4 HOH A 39 439 76 HOH HOH . F 4 HOH A 40 440 77 HOH HOH . F 4 HOH A 41 441 78 HOH HOH . F 4 HOH A 42 442 79 HOH HOH . F 4 HOH A 43 443 80 HOH HOH . F 4 HOH A 44 444 81 HOH HOH . F 4 HOH A 45 445 84 HOH HOH . F 4 HOH A 46 446 88 HOH HOH . F 4 HOH A 47 447 89 HOH HOH . F 4 HOH A 48 448 91 HOH HOH . F 4 HOH A 49 449 93 HOH HOH . F 4 HOH A 50 450 95 HOH HOH . F 4 HOH A 51 451 96 HOH HOH . F 4 HOH A 52 452 97 HOH HOH . F 4 HOH A 53 453 99 HOH HOH . F 4 HOH A 54 454 102 HOH HOH . F 4 HOH A 55 455 109 HOH HOH . F 4 HOH A 56 456 110 HOH HOH . F 4 HOH A 57 457 112 HOH HOH . F 4 HOH A 58 458 116 HOH HOH . F 4 HOH A 59 459 117 HOH HOH . F 4 HOH A 60 460 118 HOH HOH . F 4 HOH A 61 461 119 HOH HOH . G 4 HOH B 1 301 3 HOH HOH . G 4 HOH B 2 302 7 HOH HOH . G 4 HOH B 3 303 9 HOH HOH . G 4 HOH B 4 304 11 HOH HOH . G 4 HOH B 5 305 14 HOH HOH . G 4 HOH B 6 306 15 HOH HOH . G 4 HOH B 7 307 16 HOH HOH . G 4 HOH B 8 308 18 HOH HOH . G 4 HOH B 9 309 19 HOH HOH . G 4 HOH B 10 310 20 HOH HOH . G 4 HOH B 11 311 22 HOH HOH . G 4 HOH B 12 312 27 HOH HOH . G 4 HOH B 13 313 29 HOH HOH . G 4 HOH B 14 314 32 HOH HOH . G 4 HOH B 15 315 36 HOH HOH . G 4 HOH B 16 316 37 HOH HOH . G 4 HOH B 17 317 39 HOH HOH . G 4 HOH B 18 318 40 HOH HOH . G 4 HOH B 19 319 43 HOH HOH . G 4 HOH B 20 320 44 HOH HOH . G 4 HOH B 21 321 47 HOH HOH . G 4 HOH B 22 322 50 HOH HOH . G 4 HOH B 23 323 54 HOH HOH . G 4 HOH B 24 324 55 HOH HOH . G 4 HOH B 25 325 56 HOH HOH . G 4 HOH B 26 326 57 HOH HOH . G 4 HOH B 27 327 60 HOH HOH . G 4 HOH B 28 328 61 HOH HOH . G 4 HOH B 29 329 65 HOH HOH . G 4 HOH B 30 330 68 HOH HOH . G 4 HOH B 31 331 70 HOH HOH . G 4 HOH B 32 332 72 HOH HOH . G 4 HOH B 33 333 74 HOH HOH . G 4 HOH B 34 334 75 HOH HOH . G 4 HOH B 35 335 82 HOH HOH . G 4 HOH B 36 336 83 HOH HOH . G 4 HOH B 37 337 86 HOH HOH . G 4 HOH B 38 338 90 HOH HOH . G 4 HOH B 39 339 94 HOH HOH . G 4 HOH B 40 340 98 HOH HOH . G 4 HOH B 41 341 101 HOH HOH . G 4 HOH B 42 342 104 HOH HOH . G 4 HOH B 43 343 107 HOH HOH . G 4 HOH B 44 344 108 HOH HOH . G 4 HOH B 45 345 111 HOH HOH . G 4 HOH B 46 346 113 HOH HOH . G 4 HOH B 47 347 114 HOH HOH . G 4 HOH B 48 348 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 42.644 -10.481 61.229 1 59.35 ? C1 GOL 202 B 1 HETATM 2 O O1 GOL . . . E 3 41.606 -10.549 60.282 1 56.87 ? O1 GOL 202 B 1 HETATM 3 C C2 GOL . . . E 3 44.013 -10.402 60.542 1 67.13 ? C2 GOL 202 B 1 HETATM 4 O O2 GOL . . . E 3 44.332 -9.073 60.173 1 68.32 ? O2 GOL 202 B 1 HETATM 5 C C3 GOL . . . E 3 45.103 -10.955 61.466 1 65.57 ? C3 GOL 202 B 1 HETATM 6 O O3 GOL . . . E 3 46.054 -9.953 61.766 1 61.52 ? O3 GOL 202 B 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #