data_4G8S # _model_server_result.job_id 3HBrdkPDIebZaxU8fZAa5w _model_server_result.datetime_utc '2025-02-17 16:22:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4g8s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 4G8S # _exptl.entry_id 4G8S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4G8S _cell.length_a 73.759 _cell.length_b 73.759 _cell.length_c 169.472 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4G8S _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 22 A SER 0 1_555 A N MSE 23 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 A C MSE 23 A MSE 1 1_555 A N ASP 24 A ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale3 A C GLN 49 A GLN 27 1_555 A N MSE 50 A MSE 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C MSE 50 A MSE 28 1_555 A N VAL 51 A VAL 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale5 A C ASN 63 A ASN 41 1_555 A N MSE 64 A MSE 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C MSE 64 A MSE 42 1_555 A N GLN 65 A GLN 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 A C TYR 130 A TYR 108 1_555 A N MSE 131 A MSE 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale8 A C MSE 131 A MSE 109 1_555 A N THR 132 A THR 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 A C LEU 141 A LEU 119 1_555 A N MSE 142 A MSE 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale10 A C MSE 142 A MSE 120 1_555 A N LEU 143 A LEU 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 B C SER 22 B SER 0 1_555 B N MSE 23 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale12 B C MSE 23 B MSE 1 1_555 B N ASP 24 B ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 B C GLN 49 B GLN 27 1_555 B N MSE 50 B MSE 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale14 B C MSE 50 B MSE 28 1_555 B N VAL 51 B VAL 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale15 B C ASN 63 B ASN 41 1_555 B N MSE 64 B MSE 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale16 B C MSE 64 B MSE 42 1_555 B N GLN 65 B GLN 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale17 B C TYR 130 B TYR 108 1_555 B N MSE 131 B MSE 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale18 B C MSE 131 B MSE 109 1_555 B N THR 132 B THR 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale19 B C LEU 141 B LEU 119 1_555 B N MSE 142 B MSE 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale20 B C MSE 142 B MSE 120 1_555 B N LEU 143 B LEU 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 4G8S _atom_sites.fract_transf_matrix[1][1] 0.013558 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013558 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005901 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 300 300 FMN FMN . D 2 FMN B 1 201 300 FMN FMN . E 3 GOL B 1 202 1 GOL GOL . F 4 HOH A 1 401 1 HOH HOH . F 4 HOH A 2 402 2 HOH HOH . F 4 HOH A 3 403 5 HOH HOH . F 4 HOH A 4 404 6 HOH HOH . F 4 HOH A 5 405 8 HOH HOH . F 4 HOH A 6 406 10 HOH HOH . F 4 HOH A 7 407 12 HOH HOH . F 4 HOH A 8 408 13 HOH HOH . F 4 HOH A 9 409 17 HOH HOH . F 4 HOH A 10 410 21 HOH HOH . F 4 HOH A 11 411 23 HOH HOH . F 4 HOH A 12 412 24 HOH HOH . F 4 HOH A 13 413 25 HOH HOH . F 4 HOH A 14 414 26 HOH HOH . F 4 HOH A 15 415 28 HOH HOH . F 4 HOH A 16 416 30 HOH HOH . F 4 HOH A 17 417 31 HOH HOH . F 4 HOH A 18 418 33 HOH HOH . F 4 HOH A 19 419 34 HOH HOH . F 4 HOH A 20 420 35 HOH HOH . F 4 HOH A 21 421 38 HOH HOH . F 4 HOH A 22 422 41 HOH HOH . F 4 HOH A 23 423 42 HOH HOH . F 4 HOH A 24 424 45 HOH HOH . F 4 HOH A 25 425 46 HOH HOH . F 4 HOH A 26 426 49 HOH HOH . F 4 HOH A 27 427 51 HOH HOH . F 4 HOH A 28 428 52 HOH HOH . F 4 HOH A 29 429 53 HOH HOH . F 4 HOH A 30 430 58 HOH HOH . F 4 HOH A 31 431 59 HOH HOH . F 4 HOH A 32 432 62 HOH HOH . F 4 HOH A 33 433 63 HOH HOH . F 4 HOH A 34 434 66 HOH HOH . F 4 HOH A 35 435 67 HOH HOH . F 4 HOH A 36 436 69 HOH HOH . F 4 HOH A 37 437 71 HOH HOH . F 4 HOH A 38 438 73 HOH HOH . F 4 HOH A 39 439 76 HOH HOH . F 4 HOH A 40 440 77 HOH HOH . F 4 HOH A 41 441 78 HOH HOH . F 4 HOH A 42 442 79 HOH HOH . F 4 HOH A 43 443 80 HOH HOH . F 4 HOH A 44 444 81 HOH HOH . F 4 HOH A 45 445 84 HOH HOH . F 4 HOH A 46 446 88 HOH HOH . F 4 HOH A 47 447 89 HOH HOH . F 4 HOH A 48 448 91 HOH HOH . F 4 HOH A 49 449 93 HOH HOH . F 4 HOH A 50 450 95 HOH HOH . F 4 HOH A 51 451 96 HOH HOH . F 4 HOH A 52 452 97 HOH HOH . F 4 HOH A 53 453 99 HOH HOH . F 4 HOH A 54 454 102 HOH HOH . F 4 HOH A 55 455 109 HOH HOH . F 4 HOH A 56 456 110 HOH HOH . F 4 HOH A 57 457 112 HOH HOH . F 4 HOH A 58 458 116 HOH HOH . F 4 HOH A 59 459 117 HOH HOH . F 4 HOH A 60 460 118 HOH HOH . F 4 HOH A 61 461 119 HOH HOH . G 4 HOH B 1 301 3 HOH HOH . G 4 HOH B 2 302 7 HOH HOH . G 4 HOH B 3 303 9 HOH HOH . G 4 HOH B 4 304 11 HOH HOH . G 4 HOH B 5 305 14 HOH HOH . G 4 HOH B 6 306 15 HOH HOH . G 4 HOH B 7 307 16 HOH HOH . G 4 HOH B 8 308 18 HOH HOH . G 4 HOH B 9 309 19 HOH HOH . G 4 HOH B 10 310 20 HOH HOH . G 4 HOH B 11 311 22 HOH HOH . G 4 HOH B 12 312 27 HOH HOH . G 4 HOH B 13 313 29 HOH HOH . G 4 HOH B 14 314 32 HOH HOH . G 4 HOH B 15 315 36 HOH HOH . G 4 HOH B 16 316 37 HOH HOH . G 4 HOH B 17 317 39 HOH HOH . G 4 HOH B 18 318 40 HOH HOH . G 4 HOH B 19 319 43 HOH HOH . G 4 HOH B 20 320 44 HOH HOH . G 4 HOH B 21 321 47 HOH HOH . G 4 HOH B 22 322 50 HOH HOH . G 4 HOH B 23 323 54 HOH HOH . G 4 HOH B 24 324 55 HOH HOH . G 4 HOH B 25 325 56 HOH HOH . G 4 HOH B 26 326 57 HOH HOH . G 4 HOH B 27 327 60 HOH HOH . G 4 HOH B 28 328 61 HOH HOH . G 4 HOH B 29 329 65 HOH HOH . G 4 HOH B 30 330 68 HOH HOH . G 4 HOH B 31 331 70 HOH HOH . G 4 HOH B 32 332 72 HOH HOH . G 4 HOH B 33 333 74 HOH HOH . G 4 HOH B 34 334 75 HOH HOH . G 4 HOH B 35 335 82 HOH HOH . G 4 HOH B 36 336 83 HOH HOH . G 4 HOH B 37 337 86 HOH HOH . G 4 HOH B 38 338 90 HOH HOH . G 4 HOH B 39 339 94 HOH HOH . G 4 HOH B 40 340 98 HOH HOH . G 4 HOH B 41 341 101 HOH HOH . G 4 HOH B 42 342 104 HOH HOH . G 4 HOH B 43 343 107 HOH HOH . G 4 HOH B 44 344 108 HOH HOH . G 4 HOH B 45 345 111 HOH HOH . G 4 HOH B 46 346 113 HOH HOH . G 4 HOH B 47 347 114 HOH HOH . G 4 HOH B 48 348 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 2 28.03 0.309 71.539 1 16 ? N1 FMN 300 A 1 HETATM 2 C C2 FMN . . . C 2 26.94 -0.376 72.032 1 15.87 ? C2 FMN 300 A 1 HETATM 3 O O2 FMN . . . C 2 26.604 -0.223 73.202 1 17.43 ? O2 FMN 300 A 1 HETATM 4 N N3 FMN . . . C 2 26.226 -1.229 71.214 1 20.54 ? N3 FMN 300 A 1 HETATM 5 C C4 FMN . . . C 2 26.595 -1.411 69.898 1 19.44 ? C4 FMN 300 A 1 HETATM 6 O O4 FMN . . . C 2 25.946 -2.166 69.167 1 18.57 ? O4 FMN 300 A 1 HETATM 7 C C4A FMN . . . C 2 27.693 -0.73 69.399 1 19.48 ? C4A FMN 300 A 1 HETATM 8 N N5 FMN . . . C 2 28.069 -0.907 68.082 1 19.83 ? N5 FMN 300 A 1 HETATM 9 C C5A FMN . . . C 2 29.151 -0.209 67.572 1 17.29 ? C5A FMN 300 A 1 HETATM 10 C C6 FMN . . . C 2 29.528 -0.369 66.23 1 12.2 ? C6 FMN 300 A 1 HETATM 11 C C7 FMN . . . C 2 30.616 0.347 65.716 1 13.55 ? C7 FMN 300 A 1 HETATM 12 C C7M FMN . . . C 2 31.071 0.212 64.278 1 12.07 ? C7M FMN 300 A 1 HETATM 13 C C8 FMN . . . C 2 31.31 1.203 66.557 1 17.65 ? C8 FMN 300 A 1 HETATM 14 C C8M FMN . . . C 2 32.469 1.985 66.023 1 19.03 ? C8M FMN 300 A 1 HETATM 15 C C9 FMN . . . C 2 30.938 1.36 67.882 1 16.27 ? C9 FMN 300 A 1 HETATM 16 C C9A FMN . . . C 2 29.86 0.656 68.403 1 15.06 ? C9A FMN 300 A 1 HETATM 17 N N10 FMN . . . C 2 29.495 0.822 69.739 1 17.88 ? N10 FMN 300 A 1 HETATM 18 C C10 FMN . . . C 2 28.405 0.132 70.23 1 14.4 ? C10 FMN 300 A 1 HETATM 19 C C1' FMN . . . C 2 30.237 1.768 70.65 1 12.46 ? C1' FMN 300 A 1 HETATM 20 C C2' FMN . . . C 2 31.597 1.2 71.104 1 21.62 ? C2' FMN 300 A 1 HETATM 21 O O2' FMN . . . C 2 31.442 0.093 71.992 1 16.87 ? O2' FMN 300 A 1 HETATM 22 C C3' FMN . . . C 2 32.443 2.316 71.736 1 17.07 ? C3' FMN 300 A 1 HETATM 23 O O3' FMN . . . C 2 32.703 3.295 70.764 1 18.21 ? O3' FMN 300 A 1 HETATM 24 C C4' FMN . . . C 2 33.776 1.823 72.309 1 16.98 ? C4' FMN 300 A 1 HETATM 25 O O4' FMN . . . C 2 33.513 0.91 73.351 1 17.28 ? O4' FMN 300 A 1 HETATM 26 C C5' FMN . . . C 2 34.65 2.982 72.822 1 10.52 ? C5' FMN 300 A 1 HETATM 27 O O5' FMN . . . C 2 33.895 3.737 73.733 1 17.98 ? O5' FMN 300 A 1 HETATM 28 P P FMN . . . C 2 33.8 5.332 73.541 1 21.34 ? P FMN 300 A 1 HETATM 29 O O1P FMN . . . C 2 32.979 5.535 72.294 1 19.85 ? O1P FMN 300 A 1 HETATM 30 O O2P FMN . . . C 2 33.081 5.916 74.73 1 18.58 ? O2P FMN 300 A 1 HETATM 31 O O3P FMN . . . C 2 35.2 5.886 73.379 1 16.42 ? O3P FMN 300 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #