data_4G8W # _model_server_result.job_id Av7KQ8ODYgGrAsXh-9NBDQ _model_server_result.datetime_utc '2024-11-23 02:42:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4g8w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4G8W # _exptl.entry_id 4G8W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4G8W _cell.length_a 65.3 _cell.length_b 65.3 _cell.length_c 121.465 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4G8W _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 25 A HIS 25 1_555 B FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc2 B FE HEM . A HEM 301 1_555 C O1 OXY . A OXY 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 120 n n CHA C4D HEM doub 121 n n CHA HHA HEM sing 122 n n CHB C4A HEM sing 123 n n CHB C1B HEM doub 124 n n CHB HHB HEM sing 125 n n CHC C4B HEM sing 126 n n CHC C1C HEM doub 127 n n CHC HHC HEM sing 128 n n CHD C4C HEM doub 129 n n CHD C1D HEM sing 130 n n CHD HHD HEM sing 131 n n C1A C2A HEM doub 132 n y C1A NA HEM sing 133 n y C2A C3A HEM sing 134 n y C2A CAA HEM sing 135 n n C3A C4A HEM doub 136 n y C3A CMA HEM sing 137 n n C4A NA HEM sing 138 n y CMA HMA HEM sing 139 n n CMA HMAA HEM sing 140 n n CMA HMAB HEM sing 141 n n CAA CBA HEM sing 142 n n CAA HAA HEM sing 143 n n CAA HAAA HEM sing 144 n n CBA CGA HEM sing 145 n n CBA HBA HEM sing 146 n n CBA HBAA HEM sing 147 n n CGA O1A HEM doub 148 n n CGA O2A HEM sing 149 n n C1B C2B HEM sing 150 n n C1B NB HEM sing 151 n n C2B C3B HEM doub 152 n n C2B CMB HEM sing 153 n n C3B C4B HEM sing 154 n n C3B CAB HEM sing 155 n n C4B NB HEM doub 156 n n CMB HMB HEM sing 157 n n CMB HMBA HEM sing 158 n n CMB HMBB HEM sing 159 n n CAB CBB HEM doub 160 n n CAB HAB HEM sing 161 n n CBB HBB HEM sing 162 n n CBB HBBA HEM sing 163 n n C1C C2C HEM sing 164 n y C1C NC HEM sing 165 n y C2C C3C HEM doub 166 n y C2C CMC HEM sing 167 n n C3C C4C HEM sing 168 n y C3C CAC HEM sing 169 n n C4C NC HEM sing 170 n y CMC HMC HEM sing 171 n n CMC HMCA HEM sing 172 n n CMC HMCB HEM sing 173 n n CAC CBC HEM doub 174 n n CAC HAC HEM sing 175 n n CBC HBC HEM sing 176 n n CBC HBCA HEM sing 177 n n C1D C2D HEM sing 178 n n C1D ND HEM doub 179 n n C2D C3D HEM doub 180 n n C2D CMD HEM sing 181 n n C3D C4D HEM sing 182 n n C3D CAD HEM sing 183 n n C4D ND HEM sing 184 n n CMD HMD HEM sing 185 n n CMD HMDA HEM sing 186 n n CMD HMDB HEM sing 187 n n CAD CBD HEM sing 188 n n CAD HAD HEM sing 189 n n CAD HADA HEM sing 190 n n CBD CGD HEM sing 191 n n CBD HBD HEM sing 192 n n CBD HBDA HEM sing 193 n n CGD O1D HEM doub 194 n n CGD O2D HEM sing 195 n n O2A H2A HEM sing 196 n n O2D H2D HEM sing 197 n n FE NA HEM sing 198 n n FE NB HEM sing 199 n n FE NC HEM sing 200 n n FE ND HEM sing 201 n n # _atom_sites.entry_id 4G8W _atom_sites.fract_transf_matrix[1][1] 0.015314 _atom_sites.fract_transf_matrix[1][2] 0.008842 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017683 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008233 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 301 300 HEM HEM . C 3 OXY A 1 302 301 OXY OXY . D 4 FMT A 1 303 1 FMT FMT . E 3 OXY A 1 304 1 OXY OXY . F 3 OXY A 1 305 1 OXY OXY . G 5 HOH A 1 401 1 HOH HOH . G 5 HOH A 2 402 2 HOH HOH . G 5 HOH A 3 403 3 HOH HOH . G 5 HOH A 4 404 4 HOH HOH . G 5 HOH A 5 405 6 HOH HOH . G 5 HOH A 6 406 8 HOH HOH . G 5 HOH A 7 407 9 HOH HOH . G 5 HOH A 8 408 12 HOH HOH . G 5 HOH A 9 409 14 HOH HOH . G 5 HOH A 10 410 16 HOH HOH . G 5 HOH A 11 411 22 HOH HOH . G 5 HOH A 12 412 23 HOH HOH . G 5 HOH A 13 413 24 HOH HOH . G 5 HOH A 14 414 26 HOH HOH . G 5 HOH A 15 415 30 HOH HOH . G 5 HOH A 16 416 31 HOH HOH . G 5 HOH A 17 417 37 HOH HOH . G 5 HOH A 18 418 42 HOH HOH . G 5 HOH A 19 419 97 HOH HOH . G 5 HOH A 20 420 119 HOH HOH . G 5 HOH A 21 421 124 HOH HOH . G 5 HOH A 22 422 125 HOH HOH . G 5 HOH A 23 423 126 HOH HOH . G 5 HOH A 24 424 127 HOH HOH . G 5 HOH A 25 425 128 HOH HOH . G 5 HOH A 26 426 129 HOH HOH . G 5 HOH A 27 427 130 HOH HOH . G 5 HOH A 28 428 132 HOH HOH . G 5 HOH A 29 429 133 HOH HOH . G 5 HOH A 30 430 134 HOH HOH . G 5 HOH A 31 431 135 HOH HOH . G 5 HOH A 32 432 136 HOH HOH . G 5 HOH A 33 433 137 HOH HOH . G 5 HOH A 34 434 139 HOH HOH . G 5 HOH A 35 435 140 HOH HOH . G 5 HOH A 36 436 142 HOH HOH . G 5 HOH A 37 437 143 HOH HOH . G 5 HOH A 38 438 144 HOH HOH . G 5 HOH A 39 439 145 HOH HOH . G 5 HOH A 40 440 146 HOH HOH . G 5 HOH A 41 441 148 HOH HOH . G 5 HOH A 42 442 149 HOH HOH . G 5 HOH A 43 443 150 HOH HOH . G 5 HOH A 44 444 151 HOH HOH . G 5 HOH A 45 445 152 HOH HOH . G 5 HOH A 46 446 153 HOH HOH . G 5 HOH A 47 447 154 HOH HOH . G 5 HOH A 48 448 155 HOH HOH . G 5 HOH A 49 449 157 HOH HOH . G 5 HOH A 50 450 158 HOH HOH . G 5 HOH A 51 451 159 HOH HOH . G 5 HOH A 52 452 160 HOH HOH . G 5 HOH A 53 453 163 HOH HOH . G 5 HOH A 54 454 164 HOH HOH . G 5 HOH A 55 455 167 HOH HOH . G 5 HOH A 56 456 169 HOH HOH . G 5 HOH A 57 457 171 HOH HOH . G 5 HOH A 58 458 172 HOH HOH . G 5 HOH A 59 459 173 HOH HOH . G 5 HOH A 60 460 174 HOH HOH . G 5 HOH A 61 461 176 HOH HOH . G 5 HOH A 62 462 178 HOH HOH . G 5 HOH A 63 463 179 HOH HOH . G 5 HOH A 64 464 180 HOH HOH . G 5 HOH A 65 465 182 HOH HOH . G 5 HOH A 66 466 183 HOH HOH . G 5 HOH A 67 467 184 HOH HOH . G 5 HOH A 68 468 189 HOH HOH . G 5 HOH A 69 469 190 HOH HOH . G 5 HOH A 70 470 192 HOH HOH . G 5 HOH A 71 471 195 HOH HOH . G 5 HOH A 72 472 201 HOH HOH . G 5 HOH A 73 473 210 HOH HOH . G 5 HOH A 74 474 211 HOH HOH . G 5 HOH A 75 475 212 HOH HOH . G 5 HOH A 76 476 218 HOH HOH . G 5 HOH A 77 477 219 HOH HOH . G 5 HOH A 78 478 220 HOH HOH . G 5 HOH A 79 479 221 HOH HOH . G 5 HOH A 80 480 222 HOH HOH . G 5 HOH A 81 481 223 HOH HOH . G 5 HOH A 82 482 230 HOH HOH . G 5 HOH A 83 483 231 HOH HOH . G 5 HOH A 84 484 233 HOH HOH . G 5 HOH A 85 485 234 HOH HOH . G 5 HOH A 86 486 239 HOH HOH . G 5 HOH A 87 487 249 HOH HOH . G 5 HOH A 88 488 250 HOH HOH . G 5 HOH A 89 489 253 HOH HOH . G 5 HOH A 90 490 264 HOH HOH . G 5 HOH A 91 491 271 HOH HOH . G 5 HOH A 92 492 278 HOH HOH . G 5 HOH A 93 493 279 HOH HOH . G 5 HOH A 94 494 281 HOH HOH . G 5 HOH A 95 495 283 HOH HOH . G 5 HOH A 96 496 284 HOH HOH . G 5 HOH A 97 497 285 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -88.989 -8.786 -87.808 1 43.13 ? CHA HEM 301 A 1 HETATM 2 C CHB HEM . . . B 2 -88.969 -11.823 -91.743 1 45.42 ? CHB HEM 301 A 1 HETATM 3 C CHC HEM . . . B 2 -91.933 -14.885 -89.396 1 42.59 ? CHC HEM 301 A 1 HETATM 4 C CHD HEM . . . B 2 -92.154 -11.621 -85.669 1 36.73 ? CHD HEM 301 A 1 HETATM 5 C C1A HEM . . . B 2 -88.668 -9.363 -89.106 1 45.64 ? C1A HEM 301 A 1 HETATM 6 C C2A HEM . . . B 2 -87.702 -8.715 -90.068 1 51.68 ? C2A HEM 301 A 1 HETATM 7 C C3A HEM . . . B 2 -87.707 -9.643 -91.222 1 50.33 ? C3A HEM 301 A 1 HETATM 8 C C4A HEM . . . B 2 -88.688 -10.721 -90.867 1 42.31 ? C4A HEM 301 A 1 HETATM 9 C CMA HEM . . . B 2 -86.899 -9.488 -92.503 1 43.91 ? CMA HEM 301 A 1 HETATM 10 C CAA HEM . . . B 2 -86.83 -7.464 -89.917 1 57.71 ? CAA HEM 301 A 1 HETATM 11 C CBA HEM . . . B 2 -87.454 -6.105 -90.332 1 69.36 ? CBA HEM 301 A 1 HETATM 12 C CGA HEM . . . B 2 -87.014 -4.913 -89.444 1 77.76 ? CGA HEM 301 A 1 HETATM 13 O O1A HEM . . . B 2 -87.823 -3.932 -89.318 1 79.74 ? O1A HEM 301 A 1 HETATM 14 O O2A HEM . . . B 2 -85.879 -4.93 -88.861 1 78.75 ? O2A HEM 301 A 1 HETATM 15 C C1B HEM . . . B 2 -89.825 -12.967 -91.442 1 49.12 ? C1B HEM 301 A 1 HETATM 16 C C2B HEM . . . B 2 -90.023 -14.023 -92.475 1 47.32 ? C2B HEM 301 A 1 HETATM 17 C C3B HEM . . . B 2 -90.927 -14.905 -91.735 1 49.76 ? C3B HEM 301 A 1 HETATM 18 C C4B HEM . . . B 2 -91.119 -14.267 -90.419 1 46.44 ? C4B HEM 301 A 1 HETATM 19 C CMB HEM . . . B 2 -89.435 -14.101 -93.847 1 44.56 ? CMB HEM 301 A 1 HETATM 20 C CAB HEM . . . B 2 -91.505 -16.22 -92.096 1 56.24 ? CAB HEM 301 A 1 HETATM 21 C CBB HEM . . . B 2 -91.185 -16.828 -93.219 1 68.29 ? CBB HEM 301 A 1 HETATM 22 C C1C HEM . . . B 2 -92.219 -14.29 -88.136 1 40.17 ? C1C HEM 301 A 1 HETATM 23 C C2C HEM . . . B 2 -93.134 -14.926 -87.16 1 43.1 ? C2C HEM 301 A 1 HETATM 24 C C3C HEM . . . B 2 -93.156 -13.886 -86.118 1 39.87 ? C3C HEM 301 A 1 HETATM 25 C C4C HEM . . . B 2 -92.349 -12.76 -86.525 1 36.91 ? C4C HEM 301 A 1 HETATM 26 C CMC HEM . . . B 2 -93.851 -16.284 -87.225 1 40.55 ? CMC HEM 301 A 1 HETATM 27 C CAC HEM . . . B 2 -93.891 -13.877 -84.847 1 43.51 ? CAC HEM 301 A 1 HETATM 28 C CBC HEM . . . B 2 -94.756 -14.815 -84.58 1 47.84 ? CBC HEM 301 A 1 HETATM 29 C C1D HEM . . . B 2 -91.294 -10.553 -85.934 1 37.11 ? C1D HEM 301 A 1 HETATM 30 C C2D HEM . . . B 2 -91.163 -9.482 -84.932 1 40.87 ? C2D HEM 301 A 1 HETATM 31 C C3D HEM . . . B 2 -90.192 -8.63 -85.59 1 40.66 ? C3D HEM 301 A 1 HETATM 32 C C4D HEM . . . B 2 -89.934 -9.328 -86.858 1 38.27 ? C4D HEM 301 A 1 HETATM 33 C CMD HEM . . . B 2 -91.811 -9.32 -83.606 1 40.2 ? CMD HEM 301 A 1 HETATM 34 C CAD HEM . . . B 2 -89.611 -7.36 -85.08 1 43.99 ? CAD HEM 301 A 1 HETATM 35 C CBD HEM . . . B 2 -88.178 -7.565 -84.582 1 44.13 ? CBD HEM 301 A 1 HETATM 36 C CGD HEM . . . B 2 -87.727 -6.204 -84.108 1 50 ? CGD HEM 301 A 1 HETATM 37 O O1D HEM . . . B 2 -87.448 -5.34 -84.983 1 56.07 ? O1D HEM 301 A 1 HETATM 38 O O2D HEM . . . B 2 -87.675 -5.983 -82.869 1 51.89 ? O2D HEM 301 A 1 HETATM 39 N NA HEM . . . B 2 -89.225 -10.604 -89.564 1 41.28 ? NA HEM 301 A 1 HETATM 40 N NB HEM . . . B 2 -90.454 -13.132 -90.255 1 45.61 ? NB HEM 301 A 1 HETATM 41 N NC HEM . . . B 2 -91.742 -13.011 -87.754 1 37.86 ? NC HEM 301 A 1 HETATM 42 N ND HEM . . . B 2 -90.557 -10.496 -87.023 1 39.29 ? ND HEM 301 A 1 HETATM 43 FE FE HEM . . . B 2 -90.485 -11.835 -88.639 1 42.84 ? FE HEM 301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #