data_4G8W # _model_server_result.job_id y0WsMvd_-ZZOm6Bwuj1PHA _model_server_result.datetime_utc '2024-11-13 13:35:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4g8w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 4G8W # _exptl.entry_id 4G8W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4G8W _cell.length_a 65.3 _cell.length_b 65.3 _cell.length_c 121.465 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4G8W _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 25 A HIS 25 1_555 B FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc2 B FE HEM . A HEM 301 1_555 C O1 OXY . A OXY 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 70 n n C O2 FMT sing 71 n n C H FMT sing 72 n n O2 HO2 FMT sing 73 n n # _atom_sites.entry_id 4G8W _atom_sites.fract_transf_matrix[1][1] 0.015314 _atom_sites.fract_transf_matrix[1][2] 0.008842 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017683 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008233 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 301 300 HEM HEM . C 3 OXY A 1 302 301 OXY OXY . D 4 FMT A 1 303 1 FMT FMT . E 3 OXY A 1 304 1 OXY OXY . F 3 OXY A 1 305 1 OXY OXY . G 5 HOH A 1 401 1 HOH HOH . G 5 HOH A 2 402 2 HOH HOH . G 5 HOH A 3 403 3 HOH HOH . G 5 HOH A 4 404 4 HOH HOH . G 5 HOH A 5 405 6 HOH HOH . G 5 HOH A 6 406 8 HOH HOH . G 5 HOH A 7 407 9 HOH HOH . G 5 HOH A 8 408 12 HOH HOH . G 5 HOH A 9 409 14 HOH HOH . G 5 HOH A 10 410 16 HOH HOH . G 5 HOH A 11 411 22 HOH HOH . G 5 HOH A 12 412 23 HOH HOH . G 5 HOH A 13 413 24 HOH HOH . G 5 HOH A 14 414 26 HOH HOH . G 5 HOH A 15 415 30 HOH HOH . G 5 HOH A 16 416 31 HOH HOH . G 5 HOH A 17 417 37 HOH HOH . G 5 HOH A 18 418 42 HOH HOH . G 5 HOH A 19 419 97 HOH HOH . G 5 HOH A 20 420 119 HOH HOH . G 5 HOH A 21 421 124 HOH HOH . G 5 HOH A 22 422 125 HOH HOH . G 5 HOH A 23 423 126 HOH HOH . G 5 HOH A 24 424 127 HOH HOH . G 5 HOH A 25 425 128 HOH HOH . G 5 HOH A 26 426 129 HOH HOH . G 5 HOH A 27 427 130 HOH HOH . G 5 HOH A 28 428 132 HOH HOH . G 5 HOH A 29 429 133 HOH HOH . G 5 HOH A 30 430 134 HOH HOH . G 5 HOH A 31 431 135 HOH HOH . G 5 HOH A 32 432 136 HOH HOH . G 5 HOH A 33 433 137 HOH HOH . G 5 HOH A 34 434 139 HOH HOH . G 5 HOH A 35 435 140 HOH HOH . G 5 HOH A 36 436 142 HOH HOH . G 5 HOH A 37 437 143 HOH HOH . G 5 HOH A 38 438 144 HOH HOH . G 5 HOH A 39 439 145 HOH HOH . G 5 HOH A 40 440 146 HOH HOH . G 5 HOH A 41 441 148 HOH HOH . G 5 HOH A 42 442 149 HOH HOH . G 5 HOH A 43 443 150 HOH HOH . G 5 HOH A 44 444 151 HOH HOH . G 5 HOH A 45 445 152 HOH HOH . G 5 HOH A 46 446 153 HOH HOH . G 5 HOH A 47 447 154 HOH HOH . G 5 HOH A 48 448 155 HOH HOH . G 5 HOH A 49 449 157 HOH HOH . G 5 HOH A 50 450 158 HOH HOH . G 5 HOH A 51 451 159 HOH HOH . G 5 HOH A 52 452 160 HOH HOH . G 5 HOH A 53 453 163 HOH HOH . G 5 HOH A 54 454 164 HOH HOH . G 5 HOH A 55 455 167 HOH HOH . G 5 HOH A 56 456 169 HOH HOH . G 5 HOH A 57 457 171 HOH HOH . G 5 HOH A 58 458 172 HOH HOH . G 5 HOH A 59 459 173 HOH HOH . G 5 HOH A 60 460 174 HOH HOH . G 5 HOH A 61 461 176 HOH HOH . G 5 HOH A 62 462 178 HOH HOH . G 5 HOH A 63 463 179 HOH HOH . G 5 HOH A 64 464 180 HOH HOH . G 5 HOH A 65 465 182 HOH HOH . G 5 HOH A 66 466 183 HOH HOH . G 5 HOH A 67 467 184 HOH HOH . G 5 HOH A 68 468 189 HOH HOH . G 5 HOH A 69 469 190 HOH HOH . G 5 HOH A 70 470 192 HOH HOH . G 5 HOH A 71 471 195 HOH HOH . G 5 HOH A 72 472 201 HOH HOH . G 5 HOH A 73 473 210 HOH HOH . G 5 HOH A 74 474 211 HOH HOH . G 5 HOH A 75 475 212 HOH HOH . G 5 HOH A 76 476 218 HOH HOH . G 5 HOH A 77 477 219 HOH HOH . G 5 HOH A 78 478 220 HOH HOH . G 5 HOH A 79 479 221 HOH HOH . G 5 HOH A 80 480 222 HOH HOH . G 5 HOH A 81 481 223 HOH HOH . G 5 HOH A 82 482 230 HOH HOH . G 5 HOH A 83 483 231 HOH HOH . G 5 HOH A 84 484 233 HOH HOH . G 5 HOH A 85 485 234 HOH HOH . G 5 HOH A 86 486 239 HOH HOH . G 5 HOH A 87 487 249 HOH HOH . G 5 HOH A 88 488 250 HOH HOH . G 5 HOH A 89 489 253 HOH HOH . G 5 HOH A 90 490 264 HOH HOH . G 5 HOH A 91 491 271 HOH HOH . G 5 HOH A 92 492 278 HOH HOH . G 5 HOH A 93 493 279 HOH HOH . G 5 HOH A 94 494 281 HOH HOH . G 5 HOH A 95 495 283 HOH HOH . G 5 HOH A 96 496 284 HOH HOH . G 5 HOH A 97 497 285 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . D 4 -88.669 -22.995 -78.853 1 60.53 ? C FMT 303 A 1 HETATM 2 O O1 FMT . . . D 4 -88.3 -23.03 -80.005 1 54.66 ? O1 FMT 303 A 1 HETATM 3 O O2 FMT . . . D 4 -88.544 -21.862 -78.192 1 59.35 ? O2 FMT 303 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 3 #