data_4G8Z # _model_server_result.job_id 9z5MobpiO9p3B7FzMLwr2w _model_server_result.datetime_utc '2024-11-24 15:39:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4g8z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 4G8Z # _exptl.entry_id 4G8Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.78 _cell.angle_gamma 90 _cell.entry_id 4G8Z _cell.length_a 37.157 _cell.length_b 42.783 _cell.length_c 59.172 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4G8Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 237 n n PA O2A NDP sing 238 n n PA O5B NDP sing 239 n n PA O3 NDP sing 240 n n O2A HOA2 NDP sing 241 n n O5B C5B NDP sing 242 n n C5B C4B NDP sing 243 n n C5B H51A NDP sing 244 n n C5B H52A NDP sing 245 n n C4B O4B NDP sing 246 n n C4B C3B NDP sing 247 n n C4B H4B NDP sing 248 n n O4B C1B NDP sing 249 n n C3B O3B NDP sing 250 n n C3B C2B NDP sing 251 n n C3B H3B NDP sing 252 n n O3B HO3A NDP sing 253 n n C2B O2B NDP sing 254 n n C2B C1B NDP sing 255 n n C2B H2B NDP sing 256 n n O2B P2B NDP sing 257 n n C1B N9A NDP sing 258 n n C1B H1B NDP sing 259 n n N9A C8A NDP sing 260 n y N9A C4A NDP sing 261 n y C8A N7A NDP doub 262 n y C8A H8A NDP sing 263 n n N7A C5A NDP sing 264 n y C5A C6A NDP sing 265 n y C5A C4A NDP doub 266 n y C6A N6A NDP sing 267 n n C6A N1A NDP doub 268 n y N6A H61A NDP sing 269 n n N6A H62A NDP sing 270 n n N1A C2A NDP sing 271 n y C2A N3A NDP doub 272 n y C2A H2A NDP sing 273 n n N3A C4A NDP sing 274 n y O3 PN NDP sing 275 n n PN O1N NDP doub 276 n n PN O2N NDP sing 277 n n PN O5D NDP sing 278 n n O2N H21N NDP sing 279 n n O5D C5D NDP sing 280 n n C5D C4D NDP sing 281 n n C5D H51N NDP sing 282 n n C5D H52N NDP sing 283 n n C4D O4D NDP sing 284 n n C4D C3D NDP sing 285 n n C4D H4D NDP sing 286 n n O4D C1D NDP sing 287 n n C3D O3D NDP sing 288 n n C3D C2D NDP sing 289 n n C3D H3D NDP sing 290 n n O3D HO3N NDP sing 291 n n C2D O2D NDP sing 292 n n C2D C1D NDP sing 293 n n C2D H2D NDP sing 294 n n O2D HO2N NDP sing 295 n n C1D N1N NDP sing 296 n n C1D H1D NDP sing 297 n n N1N C2N NDP sing 298 n n N1N C6N NDP sing 299 n n C2N C3N NDP doub 300 n n C2N H2N NDP sing 301 n n C3N C7N NDP sing 302 n n C3N C4N NDP sing 303 n n C7N O7N NDP doub 304 n n C7N N7N NDP sing 305 n n N7N H71N NDP sing 306 n n N7N H72N NDP sing 307 n n C4N C5N NDP sing 308 n n C4N H41N NDP sing 309 n n C4N H42N NDP sing 310 n n C5N C6N NDP doub 311 n n C5N H5N NDP sing 312 n n C6N H6N NDP sing 313 n n P2B O1X NDP doub 314 n n P2B O2X NDP sing 315 n n P2B O3X NDP sing 316 n n O2X HOP2 NDP sing 317 n n O3X HOP3 NDP sing 318 n n # _atom_sites.entry_id 4G8Z _atom_sites.fract_transf_matrix[1][1] 0.026913 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00225 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023374 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016959 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TOP X 1 301 1 TOP TOP . C 3 NDP X 1 302 1 NDP NDP . D 4 HOH X 1 401 1 HOH HOH . D 4 HOH X 2 402 2 HOH HOH . D 4 HOH X 3 403 3 HOH HOH . D 4 HOH X 4 404 4 HOH HOH . D 4 HOH X 5 405 5 HOH HOH . D 4 HOH X 6 406 6 HOH HOH . D 4 HOH X 7 407 7 HOH HOH . D 4 HOH X 8 408 8 HOH HOH . D 4 HOH X 9 409 9 HOH HOH . D 4 HOH X 10 410 10 HOH HOH . D 4 HOH X 11 411 11 HOH HOH . D 4 HOH X 12 412 12 HOH HOH . D 4 HOH X 13 413 13 HOH HOH . D 4 HOH X 14 414 14 HOH HOH . D 4 HOH X 15 415 15 HOH HOH . D 4 HOH X 16 416 16 HOH HOH . D 4 HOH X 17 417 17 HOH HOH . D 4 HOH X 18 418 18 HOH HOH . D 4 HOH X 19 419 19 HOH HOH . D 4 HOH X 20 420 20 HOH HOH . D 4 HOH X 21 421 21 HOH HOH . D 4 HOH X 22 422 23 HOH HOH . D 4 HOH X 23 423 24 HOH HOH . D 4 HOH X 24 424 25 HOH HOH . D 4 HOH X 25 425 26 HOH HOH . D 4 HOH X 26 426 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . C 3 -2.772 4.207 22.652 1 23.11 ? PA NDP 302 X 1 HETATM 2 O O1A NDP . . . C 3 -3.95 3.75 23.431 1 20.49 ? O1A NDP 302 X 1 HETATM 3 O O2A NDP . . . C 3 -2.748 4.333 21.185 1 20.11 ? O2A NDP 302 X 1 HETATM 4 O O5B NDP . . . C 3 -2.187 5.568 23.175 1 21.43 ? O5B NDP 302 X 1 HETATM 5 C C5B NDP . . . C 3 -2.046 5.659 24.64 1 23.91 ? C5B NDP 302 X 1 HETATM 6 C C4B NDP . . . C 3 -1.855 7.071 24.968 1 22.38 ? C4B NDP 302 X 1 HETATM 7 O O4B NDP . . . C 3 -3.049 7.716 24.41 1 25.36 ? O4B NDP 302 X 1 HETATM 8 C C3B NDP . . . C 3 -1.947 7.246 26.513 1 23.25 ? C3B NDP 302 X 1 HETATM 9 O O3B NDP . . . C 3 -0.647 7.529 26.968 1 26.34 ? O3B NDP 302 X 1 HETATM 10 C C2B NDP . . . C 3 -2.751 8.511 26.596 1 25.49 ? C2B NDP 302 X 1 HETATM 11 O O2B NDP . . . C 3 -2.005 9.617 26.114 1 23.95 ? O2B NDP 302 X 1 HETATM 12 C C1B NDP . . . C 3 -3.8 8.276 25.505 1 23.5 ? C1B NDP 302 X 1 HETATM 13 N N9A NDP . . . C 3 -4.975 7.556 26.032 1 28.44 ? N9A NDP 302 X 1 HETATM 14 C C8A NDP . . . C 3 -5.365 6.297 25.737 1 25.93 ? C8A NDP 302 X 1 HETATM 15 N N7A NDP . . . C 3 -6.479 6.022 26.392 1 27.06 ? N7A NDP 302 X 1 HETATM 16 C C5A NDP . . . C 3 -6.799 7.101 27.11 1 29.58 ? C5A NDP 302 X 1 HETATM 17 C C6A NDP . . . C 3 -7.841 7.398 27.984 1 30.27 ? C6A NDP 302 X 1 HETATM 18 N N6A NDP . . . C 3 -8.776 6.471 28.24 1 34.22 ? N6A NDP 302 X 1 HETATM 19 N N1A NDP . . . C 3 -7.895 8.619 28.557 1 30.53 ? N1A NDP 302 X 1 HETATM 20 C C2A NDP . . . C 3 -6.968 9.546 28.311 1 31.06 ? C2A NDP 302 X 1 HETATM 21 N N3A NDP . . . C 3 -5.966 9.304 27.454 1 29.32 ? N3A NDP 302 X 1 HETATM 22 C C4A NDP . . . C 3 -5.841 8.076 26.897 1 27.65 ? C4A NDP 302 X 1 HETATM 23 O O3 NDP . . . C 3 -1.445 3.366 22.976 1 23.63 ? O3 NDP 302 X 1 HETATM 24 P PN NDP . . . C 3 -1.104 1.853 23.253 1 27.29 ? PN NDP 302 X 1 HETATM 25 O O1N NDP . . . C 3 -1.904 1.531 24.496 1 20.56 ? O1N NDP 302 X 1 HETATM 26 O O2N NDP . . . C 3 0.404 1.873 23.346 1 28.43 ? O2N NDP 302 X 1 HETATM 27 O O5D NDP . . . C 3 -1.486 1.071 22.005 1 24.43 ? O5D NDP 302 X 1 HETATM 28 C C5D NDP . . . C 3 -0.787 1.436 20.774 1 23.54 ? C5D NDP 302 X 1 HETATM 29 C C4D NDP . . . C 3 -0.313 0.145 20.073 1 25.37 ? C4D NDP 302 X 1 HETATM 30 O O4D NDP . . . C 3 -1.501 -0.516 19.537 1 24.97 ? O4D NDP 302 X 1 HETATM 31 C C3D NDP . . . C 3 0.692 0.256 18.909 1 25.18 ? C3D NDP 302 X 1 HETATM 32 O O3D NDP . . . C 3 1.494 -0.949 18.959 1 23.02 ? O3D NDP 302 X 1 HETATM 33 C C2D NDP . . . C 3 -0.208 0.262 17.72 1 24.16 ? C2D NDP 302 X 1 HETATM 34 O O2D NDP . . . C 3 0.443 -0.138 16.503 1 26.12 ? O2D NDP 302 X 1 HETATM 35 C C1D NDP . . . C 3 -1.25 -0.768 18.129 1 25.34 ? C1D NDP 302 X 1 HETATM 36 N N1N NDP . . . C 3 -2.57 -0.634 17.512 1 24.87 ? N1N NDP 302 X 1 HETATM 37 C C2N NDP . . . C 3 -3.123 -1.784 16.922 1 21.49 ? C2N NDP 302 X 1 HETATM 38 C C3N NDP . . . C 3 -4.364 -1.724 16.321 1 21.43 ? C3N NDP 302 X 1 HETATM 39 C C7N NDP . . . C 3 -4.912 -2.987 15.609 1 18.4 ? C7N NDP 302 X 1 HETATM 40 O O7N NDP . . . C 3 -6.016 -2.957 15.11 1 12.93 ? O7N NDP 302 X 1 HETATM 41 N N7N NDP . . . C 3 -4.104 -4.052 15.488 1 19.8 ? N7N NDP 302 X 1 HETATM 42 C C4N NDP . . . C 3 -5.084 -0.515 16.326 1 20.65 ? C4N NDP 302 X 1 HETATM 43 C C5N NDP . . . C 3 -4.526 0.618 16.922 1 25.32 ? C5N NDP 302 X 1 HETATM 44 C C6N NDP . . . C 3 -3.296 0.579 17.557 1 25.47 ? C6N NDP 302 X 1 HETATM 45 P P2B NDP . . . C 3 -1.026 10.642 27.017 1 25.23 ? P2B NDP 302 X 1 HETATM 46 O O1X NDP . . . C 3 0.191 9.8 27.303 1 25.98 ? O1X NDP 302 X 1 HETATM 47 O O2X NDP . . . C 3 -0.929 11.883 26.167 1 23.29 ? O2X NDP 302 X 1 HETATM 48 O O3X NDP . . . C 3 -1.873 10.858 28.436 1 23.56 ? O3X NDP 302 X 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 48 #