data_4G9B
#
_model_server_result.job_id            g1dxuKQkzcXiLpKE8UoS9g 
_model_server_result.datetime_utc      '2024-11-05 00:23:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4g9b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":310}' 
#
_entry.id    4G9B 
#
_exptl.entry_id    4G9B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4G9B 
_cell.length_a            129.168 
_cell.length_b            129.168 
_cell.length_c            85.766 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4G9B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 17_555 x-y+1/3,-y+2/3,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 74.57518 57.177333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             K 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 11 A ASP 9 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? 
metalc ? metalc2 A O ASP 13 A ASP 11 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc3 A OD1 ASP 174 A ASP 172 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc4 B MG MG . A MG 301 1_555 L O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc5 B MG MG . A MG 301 1_555 L O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
metalc ? metalc6 B MG MG . A MG 301 1_555 L O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
metalc ? metalc7 C MG MG . A MG 302 1_555 L O HOH . A HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
metalc ? metalc8 C MG MG . A MG 302 1_555 L O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc9 C MG MG . A MG 302 1_555 L O HOH . A HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
metalc ? metalc10 E MG MG . A MG 304 1_555 L O HOH . A HOH 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc11 E MG MG . A MG 304 1_555 L O HOH . A HOH 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
metalc ? metalc12 E MG MG . A MG 304 1_555 L O HOH . A HOH 496 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
metalc ? metalc13 E MG MG . A MG 304 1_555 L O HOH . A HOH 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc14 E MG MG . A MG 304 1_555 L O HOH . A HOH 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc15 E MG MG . A MG 304 1_555 L O HOH . A HOH 568 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4G9B 
_atom_sites.fract_transf_matrix[1][1]    0.007742 
_atom_sites.fract_transf_matrix[1][2]    0.00447 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00894 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01166 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 301 1 MG MG . 
C 2 MG A 1 302 1 MG MG . 
D 3 CL A 1 303 1 CL CL . 
E 2 MG A 1 304 1 MG MG . 
F 4 SO4 A 1 305 1 SO4 SO4 . 
G 4 SO4 A 1 306 2 SO4 SO4 . 
H 4 SO4 A 1 307 3 SO4 SO4 . 
I 3 CL A 1 308 1 CL CL . 
J 5 UNL A 1 309 1 UNL UNL . 
K 6 GOL A 1 310 1 GOL GOL . 
L 7 HOH A 1 401 1 HOH HOH . 
L 7 HOH A 2 402 2 HOH HOH . 
L 7 HOH A 3 403 3 HOH HOH . 
L 7 HOH A 4 404 5 HOH HOH . 
L 7 HOH A 5 405 6 HOH HOH . 
L 7 HOH A 6 406 7 HOH HOH . 
L 7 HOH A 7 407 8 HOH HOH . 
L 7 HOH A 8 408 10 HOH HOH . 
L 7 HOH A 9 409 11 HOH HOH . 
L 7 HOH A 10 410 12 HOH HOH . 
L 7 HOH A 11 411 13 HOH HOH . 
L 7 HOH A 12 412 14 HOH HOH . 
L 7 HOH A 13 413 15 HOH HOH . 
L 7 HOH A 14 414 16 HOH HOH . 
L 7 HOH A 15 415 17 HOH HOH . 
L 7 HOH A 16 416 18 HOH HOH . 
L 7 HOH A 17 417 19 HOH HOH . 
L 7 HOH A 18 418 20 HOH HOH . 
L 7 HOH A 19 419 21 HOH HOH . 
L 7 HOH A 20 420 22 HOH HOH . 
L 7 HOH A 21 421 23 HOH HOH . 
L 7 HOH A 22 422 24 HOH HOH . 
L 7 HOH A 23 423 25 HOH HOH . 
L 7 HOH A 24 424 26 HOH HOH . 
L 7 HOH A 25 425 27 HOH HOH . 
L 7 HOH A 26 426 28 HOH HOH . 
L 7 HOH A 27 427 29 HOH HOH . 
L 7 HOH A 28 428 30 HOH HOH . 
L 7 HOH A 29 429 32 HOH HOH . 
L 7 HOH A 30 430 34 HOH HOH . 
L 7 HOH A 31 431 35 HOH HOH . 
L 7 HOH A 32 432 36 HOH HOH . 
L 7 HOH A 33 433 37 HOH HOH . 
L 7 HOH A 34 434 38 HOH HOH . 
L 7 HOH A 35 435 39 HOH HOH . 
L 7 HOH A 36 436 40 HOH HOH . 
L 7 HOH A 37 437 41 HOH HOH . 
L 7 HOH A 38 438 42 HOH HOH . 
L 7 HOH A 39 439 43 HOH HOH . 
L 7 HOH A 40 440 44 HOH HOH . 
L 7 HOH A 41 441 46 HOH HOH . 
L 7 HOH A 42 442 47 HOH HOH . 
L 7 HOH A 43 443 48 HOH HOH . 
L 7 HOH A 44 444 49 HOH HOH . 
L 7 HOH A 45 445 50 HOH HOH . 
L 7 HOH A 46 446 51 HOH HOH . 
L 7 HOH A 47 447 53 HOH HOH . 
L 7 HOH A 48 448 54 HOH HOH . 
L 7 HOH A 49 449 55 HOH HOH . 
L 7 HOH A 50 450 56 HOH HOH . 
L 7 HOH A 51 451 57 HOH HOH . 
L 7 HOH A 52 452 58 HOH HOH . 
L 7 HOH A 53 453 59 HOH HOH . 
L 7 HOH A 54 454 60 HOH HOH . 
L 7 HOH A 55 455 61 HOH HOH . 
L 7 HOH A 56 456 62 HOH HOH . 
L 7 HOH A 57 457 63 HOH HOH . 
L 7 HOH A 58 458 64 HOH HOH . 
L 7 HOH A 59 459 65 HOH HOH . 
L 7 HOH A 60 460 66 HOH HOH . 
L 7 HOH A 61 461 67 HOH HOH . 
L 7 HOH A 62 462 68 HOH HOH . 
L 7 HOH A 63 463 69 HOH HOH . 
L 7 HOH A 64 464 70 HOH HOH . 
L 7 HOH A 65 465 71 HOH HOH . 
L 7 HOH A 66 466 72 HOH HOH . 
L 7 HOH A 67 467 73 HOH HOH . 
L 7 HOH A 68 468 74 HOH HOH . 
L 7 HOH A 69 469 75 HOH HOH . 
L 7 HOH A 70 470 76 HOH HOH . 
L 7 HOH A 71 471 77 HOH HOH . 
L 7 HOH A 72 472 78 HOH HOH . 
L 7 HOH A 73 473 79 HOH HOH . 
L 7 HOH A 74 474 80 HOH HOH . 
L 7 HOH A 75 475 82 HOH HOH . 
L 7 HOH A 76 476 83 HOH HOH . 
L 7 HOH A 77 477 84 HOH HOH . 
L 7 HOH A 78 478 85 HOH HOH . 
L 7 HOH A 79 479 87 HOH HOH . 
L 7 HOH A 80 480 88 HOH HOH . 
L 7 HOH A 81 481 89 HOH HOH . 
L 7 HOH A 82 482 90 HOH HOH . 
L 7 HOH A 83 483 91 HOH HOH . 
L 7 HOH A 84 484 93 HOH HOH . 
L 7 HOH A 85 485 94 HOH HOH . 
L 7 HOH A 86 486 96 HOH HOH . 
L 7 HOH A 87 487 98 HOH HOH . 
L 7 HOH A 88 488 99 HOH HOH . 
L 7 HOH A 89 489 101 HOH HOH . 
L 7 HOH A 90 490 102 HOH HOH . 
L 7 HOH A 91 491 103 HOH HOH . 
L 7 HOH A 92 492 104 HOH HOH . 
L 7 HOH A 93 493 105 HOH HOH . 
L 7 HOH A 94 494 106 HOH HOH . 
L 7 HOH A 95 495 107 HOH HOH . 
L 7 HOH A 96 496 108 HOH HOH . 
L 7 HOH A 97 497 109 HOH HOH . 
L 7 HOH A 98 498 110 HOH HOH . 
L 7 HOH A 99 499 111 HOH HOH . 
L 7 HOH A 100 500 112 HOH HOH . 
L 7 HOH A 101 501 114 HOH HOH . 
L 7 HOH A 102 502 115 HOH HOH . 
L 7 HOH A 103 503 116 HOH HOH . 
L 7 HOH A 104 504 117 HOH HOH . 
L 7 HOH A 105 505 118 HOH HOH . 
L 7 HOH A 106 506 119 HOH HOH . 
L 7 HOH A 107 507 120 HOH HOH . 
L 7 HOH A 108 508 121 HOH HOH . 
L 7 HOH A 109 509 122 HOH HOH . 
L 7 HOH A 110 510 123 HOH HOH . 
L 7 HOH A 111 511 124 HOH HOH . 
L 7 HOH A 112 512 125 HOH HOH . 
L 7 HOH A 113 513 126 HOH HOH . 
L 7 HOH A 114 514 128 HOH HOH . 
L 7 HOH A 115 515 129 HOH HOH . 
L 7 HOH A 116 516 130 HOH HOH . 
L 7 HOH A 117 517 131 HOH HOH . 
L 7 HOH A 118 518 132 HOH HOH . 
L 7 HOH A 119 519 133 HOH HOH . 
L 7 HOH A 120 520 135 HOH HOH . 
L 7 HOH A 121 521 137 HOH HOH . 
L 7 HOH A 122 522 140 HOH HOH . 
L 7 HOH A 123 523 142 HOH HOH . 
L 7 HOH A 124 524 144 HOH HOH . 
L 7 HOH A 125 525 145 HOH HOH . 
L 7 HOH A 126 526 146 HOH HOH . 
L 7 HOH A 127 527 148 HOH HOH . 
L 7 HOH A 128 528 152 HOH HOH . 
L 7 HOH A 129 529 153 HOH HOH . 
L 7 HOH A 130 530 154 HOH HOH . 
L 7 HOH A 131 531 155 HOH HOH . 
L 7 HOH A 132 532 156 HOH HOH . 
L 7 HOH A 133 533 158 HOH HOH . 
L 7 HOH A 134 534 159 HOH HOH . 
L 7 HOH A 135 535 160 HOH HOH . 
L 7 HOH A 136 536 161 HOH HOH . 
L 7 HOH A 137 537 165 HOH HOH . 
L 7 HOH A 138 538 167 HOH HOH . 
L 7 HOH A 139 539 168 HOH HOH . 
L 7 HOH A 140 540 169 HOH HOH . 
L 7 HOH A 141 541 171 HOH HOH . 
L 7 HOH A 142 542 172 HOH HOH . 
L 7 HOH A 143 543 173 HOH HOH . 
L 7 HOH A 144 544 175 HOH HOH . 
L 7 HOH A 145 545 177 HOH HOH . 
L 7 HOH A 146 546 179 HOH HOH . 
L 7 HOH A 147 547 180 HOH HOH . 
L 7 HOH A 148 548 181 HOH HOH . 
L 7 HOH A 149 549 182 HOH HOH . 
L 7 HOH A 150 550 183 HOH HOH . 
L 7 HOH A 151 551 184 HOH HOH . 
L 7 HOH A 152 552 187 HOH HOH . 
L 7 HOH A 153 553 189 HOH HOH . 
L 7 HOH A 154 554 190 HOH HOH . 
L 7 HOH A 155 555 192 HOH HOH . 
L 7 HOH A 156 556 193 HOH HOH . 
L 7 HOH A 157 557 194 HOH HOH . 
L 7 HOH A 158 558 196 HOH HOH . 
L 7 HOH A 159 559 197 HOH HOH . 
L 7 HOH A 160 560 198 HOH HOH . 
L 7 HOH A 161 561 199 HOH HOH . 
L 7 HOH A 162 562 200 HOH HOH . 
L 7 HOH A 163 563 202 HOH HOH . 
L 7 HOH A 164 564 203 HOH HOH . 
L 7 HOH A 165 565 204 HOH HOH . 
L 7 HOH A 166 566 205 HOH HOH . 
L 7 HOH A 167 567 206 HOH HOH . 
L 7 HOH A 168 568 207 HOH HOH . 
L 7 HOH A 169 569 208 HOH HOH . 
L 7 HOH A 170 570 209 HOH HOH . 
L 7 HOH A 171 571 210 HOH HOH . 
L 7 HOH A 172 572 211 HOH HOH . 
L 7 HOH A 173 573 212 HOH HOH . 
L 7 HOH A 174 574 213 HOH HOH . 
L 7 HOH A 175 575 214 HOH HOH . 
L 7 HOH A 176 576 215 HOH HOH . 
L 7 HOH A 177 577 216 HOH HOH . 
L 7 HOH A 178 578 217 HOH HOH . 
L 7 HOH A 179 579 218 HOH HOH . 
L 7 HOH A 180 580 219 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . K 6 12.607 30.076 15.792 1 48.29 ? C1 GOL 310 A 1 
HETATM 2 O O1 GOL . . . K 6 11.813 31.213 16.041 1 48.92 ? O1 GOL 310 A 1 
HETATM 3 C C2 GOL . . . K 6 12.793 29.298 17.093 1 51.04 ? C2 GOL 310 A 1 
HETATM 4 O O2 GOL . . . K 6 12.953 27.927 16.796 1 55.59 ? O2 GOL 310 A 1 
HETATM 5 C C3 GOL . . . K 6 14.051 29.798 17.799 1 51.95 ? C3 GOL 310 A 1 
HETATM 6 O O3 GOL . . . K 6 13.887 29.712 19.196 1 45.04 ? O3 GOL 310 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#