data_4G9L
#
_model_server_result.job_id            b7xiUHs2jBcHe8R4i8XXLA 
_model_server_result.datetime_utc      '2024-12-18 01:58:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4g9l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    4G9L 
#
_exptl.entry_id    4G9L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4G9L 
_cell.length_a            37.99 
_cell.length_b            78.84 
_cell.length_c            106.73 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4G9L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,N 1 1 
B,G,H,I,J,K,L,M,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 25 A ASP 107 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc2 A OD1 ASP 25 A ASP 107 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? 
metalc ? metalc3 A O ASP 59 A ASP 141 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc4 A NE2 HIS 69 A HIS 151 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
metalc ? metalc5 A OD2 ASP 71 A ASP 153 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
metalc ? metalc6 A OD1 ASP 76 A ASP 158 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc7 A O GLY 77 A GLY 159 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? 
metalc ? metalc8 A O GLY 79 A GLY 161 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
metalc ? metalc9 A O VAL 81 A VAL 163 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc10 A NE2 HIS 84 A HIS 166 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc11 A O GLY 91 A GLY 173 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
metalc ? metalc12 A O ASN 93 A ASN 175 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? 
metalc ? metalc13 A OD1 ASP 95 A ASP 177 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
metalc ? metalc14 A ND1 HIS 97 A HIS 179 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc15 A OD2 ASP 99 A ASP 181 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? 
metalc ? metalc16 A O ASP 100 A ASP 182 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc17 A OD1 ASP 100 A ASP 182 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? 
metalc ? metalc18 A OE2 GLU 102 A GLU 184 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
metalc ? metalc19 A O GLU 102 A GLU 184 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? 
metalc ? metalc20 A NE2 HIS 119 A HIS 201 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? 
metalc ? metalc21 A NE2 HIS 123 A HIS 205 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc22 A NE2 HIS 129 A HIS 211 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
metalc ? metalc23 E CA CA . A CA 303 1_555 N O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc24 E CA CA . A CA 303 1_555 N O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? 
metalc ? metalc25 F CA CA . A CA 304 1_555 N O HOH . A HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc26 B OD2 ASP 25 B ASP 107 1_555 L CA CA . B CA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc27 B OD1 ASP 25 B ASP 107 1_555 L CA CA . B CA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? 
metalc ? metalc28 B O ASP 59 B ASP 141 1_555 K CA CA . B CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
metalc ? metalc29 B NE2 HIS 69 B HIS 151 1_555 I ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc30 B OD2 ASP 71 B ASP 153 1_555 I ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? 
metalc ? metalc31 B OD1 ASP 76 B ASP 158 1_555 J CA CA . B CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc32 B O GLY 77 B GLY 159 1_555 J CA CA . B CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc33 B O GLY 79 B GLY 161 1_555 J CA CA . B CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? 
metalc ? metalc34 B O VAL 81 B VAL 163 1_555 J CA CA . B CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc35 B NE2 HIS 84 B HIS 166 1_555 I ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? 
metalc ? metalc36 B O GLY 91 B GLY 173 1_555 K CA CA . B CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? 
metalc ? metalc37 B O ASN 93 B ASN 175 1_555 K CA CA . B CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? 
metalc ? metalc38 B OD1 ASP 95 B ASP 177 1_555 K CA CA . B CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
metalc ? metalc39 B ND1 HIS 97 B HIS 179 1_555 I ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc40 B OD2 ASP 99 B ASP 181 1_555 J CA CA . B CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc41 B O ASP 100 B ASP 182 1_555 L CA CA . B CA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc42 B OD1 ASP 100 B ASP 182 1_555 L CA CA . B CA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc43 B OE2 GLU 102 B GLU 184 1_555 J CA CA . B CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc44 B O GLU 102 B GLU 184 1_555 L CA CA . B CA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? 
metalc ? metalc45 B NE2 HIS 119 B HIS 201 1_555 H ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
metalc ? metalc46 B NE2 HIS 123 B HIS 205 1_555 H ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
metalc ? metalc47 B NE2 HIS 129 B HIS 211 1_555 H ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
metalc ? metalc48 B OXT THR 173 B THR 255 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.749 ? 
metalc ? metalc49 B O THR 173 B THR 255 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? 
metalc ? metalc50 H ZN ZN . B ZN 302 1_555 M O5 NGH . B NGH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc51 H ZN ZN . B ZN 302 1_555 M O4 NGH . B NGH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? 
metalc ? metalc52 K CA CA . B CA 305 1_555 O O HOH . B HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc53 K CA CA . B CA 305 1_555 O O HOH . B HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4G9L 
_atom_sites.fract_transf_matrix[1][1]    0.026323 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012684 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009369 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 301 258 ZN ZN . 
D 3 CA A 1 302 259 CA CA . 
E 3 CA A 1 303 260 CA CA . 
F 3 CA A 1 304 261 CA CA . 
G 2 ZN B 1 301 257 ZN ZN . 
H 2 ZN B 1 302 257 ZN ZN . 
I 2 ZN B 1 303 258 ZN ZN . 
J 3 CA B 1 304 259 CA CA . 
K 3 CA B 1 305 260 CA CA . 
L 3 CA B 1 306 261 CA CA . 
M 4 NGH B 1 307 1 NGH NGH . 
N 5 HOH A 1 401 1 HOH HOH . 
N 5 HOH A 2 402 4 HOH HOH . 
N 5 HOH A 3 403 7 HOH HOH . 
N 5 HOH A 4 404 9 HOH HOH . 
N 5 HOH A 5 405 11 HOH HOH . 
N 5 HOH A 6 406 12 HOH HOH . 
N 5 HOH A 7 407 15 HOH HOH . 
N 5 HOH A 8 408 19 HOH HOH . 
N 5 HOH A 9 409 21 HOH HOH . 
N 5 HOH A 10 410 25 HOH HOH . 
N 5 HOH A 11 411 27 HOH HOH . 
N 5 HOH A 12 412 28 HOH HOH . 
N 5 HOH A 13 413 29 HOH HOH . 
N 5 HOH A 14 414 32 HOH HOH . 
N 5 HOH A 15 415 33 HOH HOH . 
N 5 HOH A 16 416 34 HOH HOH . 
N 5 HOH A 17 417 35 HOH HOH . 
N 5 HOH A 18 418 37 HOH HOH . 
N 5 HOH A 19 419 41 HOH HOH . 
N 5 HOH A 20 420 48 HOH HOH . 
N 5 HOH A 21 421 53 HOH HOH . 
N 5 HOH A 22 422 56 HOH HOH . 
N 5 HOH A 23 423 57 HOH HOH . 
N 5 HOH A 24 424 58 HOH HOH . 
N 5 HOH A 25 425 59 HOH HOH . 
N 5 HOH A 26 426 64 HOH HOH . 
N 5 HOH A 27 427 65 HOH HOH . 
N 5 HOH A 28 428 68 HOH HOH . 
N 5 HOH A 29 429 70 HOH HOH . 
N 5 HOH A 30 430 71 HOH HOH . 
N 5 HOH A 31 431 73 HOH HOH . 
N 5 HOH A 32 432 432 HOH HOH . 
O 5 HOH B 1 401 2 HOH HOH . 
O 5 HOH B 2 402 3 HOH HOH . 
O 5 HOH B 3 403 5 HOH HOH . 
O 5 HOH B 4 404 6 HOH HOH . 
O 5 HOH B 5 405 8 HOH HOH . 
O 5 HOH B 6 406 10 HOH HOH . 
O 5 HOH B 7 407 13 HOH HOH . 
O 5 HOH B 8 408 14 HOH HOH . 
O 5 HOH B 9 409 16 HOH HOH . 
O 5 HOH B 10 410 17 HOH HOH . 
O 5 HOH B 11 411 18 HOH HOH . 
O 5 HOH B 12 412 20 HOH HOH . 
O 5 HOH B 13 413 22 HOH HOH . 
O 5 HOH B 14 414 23 HOH HOH . 
O 5 HOH B 15 415 24 HOH HOH . 
O 5 HOH B 16 416 26 HOH HOH . 
O 5 HOH B 17 417 30 HOH HOH . 
O 5 HOH B 18 418 31 HOH HOH . 
O 5 HOH B 19 419 36 HOH HOH . 
O 5 HOH B 20 420 39 HOH HOH . 
O 5 HOH B 21 421 40 HOH HOH . 
O 5 HOH B 22 422 42 HOH HOH . 
O 5 HOH B 23 423 43 HOH HOH . 
O 5 HOH B 24 424 44 HOH HOH . 
O 5 HOH B 25 425 45 HOH HOH . 
O 5 HOH B 26 426 46 HOH HOH . 
O 5 HOH B 27 427 47 HOH HOH . 
O 5 HOH B 28 428 50 HOH HOH . 
O 5 HOH B 29 429 51 HOH HOH . 
O 5 HOH B 30 430 52 HOH HOH . 
O 5 HOH B 31 431 54 HOH HOH . 
O 5 HOH B 32 432 55 HOH HOH . 
O 5 HOH B 33 433 60 HOH HOH . 
O 5 HOH B 34 434 62 HOH HOH . 
O 5 HOH B 35 435 63 HOH HOH . 
O 5 HOH B 36 436 437 HOH HOH . 
O 5 HOH B 37 437 67 HOH HOH . 
O 5 HOH B 38 438 69 HOH HOH . 
O 5 HOH B 39 439 72 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               12.446 
_atom_site.Cartn_y               65.625 
_atom_site.Cartn_z               71.486 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        10.39 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           302 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           1 
#