data_4G9N # _model_server_result.job_id 1tk08D9KHPaJ0zjD49NzaA _model_server_result.datetime_utc '2024-11-16 04:49:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4g9n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 4G9N # _exptl.entry_id 4G9N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-galactopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.45 _cell.angle_gamma 90 _cell.entry_id 4G9N _cell.length_a 130.583 _cell.length_b 61.251 _cell.length_c 32.839 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4G9N _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NGA _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-galactopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-galactosamine;2-acetamido-2-deoxy-beta-D-galactose;2-acetamido-2-deoxy-D-galactose;2-acetamido-2-deoxy-galactose;N-ACETYL-D-GALACTOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NGA sing 205 n n C1 O1 NGA sing 206 n n C1 O5 NGA sing 207 n n C1 H1 NGA sing 208 n n C2 C3 NGA sing 209 n n C2 N2 NGA sing 210 n n C2 H2 NGA sing 211 n n C3 C4 NGA sing 212 n n C3 O3 NGA sing 213 n n C3 H3 NGA sing 214 n n C4 C5 NGA sing 215 n n C4 O4 NGA sing 216 n n C4 H4 NGA sing 217 n n C5 C6 NGA sing 218 n n C5 O5 NGA sing 219 n n C5 H5 NGA sing 220 n n C6 O6 NGA sing 221 n n C6 H61 NGA sing 222 n n C6 H62 NGA sing 223 n n C7 C8 NGA sing 224 n n C7 N2 NGA sing 225 n n C7 O7 NGA doub 226 n n C8 H81 NGA sing 227 n n C8 H82 NGA sing 228 n n C8 H83 NGA sing 229 n n N2 HN2 NGA sing 230 n n O1 HO1 NGA sing 231 n n O3 HO3 NGA sing 232 n n O4 HO4 NGA sing 233 n n O6 HO6 NGA sing 234 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NGA DGalpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NGA N-acetyl-b-D-galactopyranosamine 'COMMON NAME' GMML 1 NGA b-D-GalpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NGA GalNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4G9N _atom_sites.fract_transf_matrix[1][1] 0.007658 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000462 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016326 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.030507 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NGA A 1 201 2 NGA NGA . D 2 NGA A 1 202 3 NGA NGA . E 2 NGA B 1 201 1 NGA NGA . F 3 HOH A 1 301 2 HOH HOH . F 3 HOH A 2 302 5 HOH HOH . F 3 HOH A 3 303 6 HOH HOH . F 3 HOH A 4 304 8 HOH HOH . F 3 HOH A 5 305 11 HOH HOH . F 3 HOH A 6 306 12 HOH HOH . F 3 HOH A 7 307 15 HOH HOH . F 3 HOH A 8 308 16 HOH HOH . F 3 HOH A 9 309 20 HOH HOH . F 3 HOH A 10 310 21 HOH HOH . F 3 HOH A 11 311 24 HOH HOH . F 3 HOH A 12 312 29 HOH HOH . F 3 HOH A 13 313 37 HOH HOH . F 3 HOH A 14 314 38 HOH HOH . F 3 HOH A 15 315 39 HOH HOH . F 3 HOH A 16 316 40 HOH HOH . F 3 HOH A 17 317 41 HOH HOH . F 3 HOH A 18 318 45 HOH HOH . F 3 HOH A 19 319 46 HOH HOH . F 3 HOH A 20 320 50 HOH HOH . F 3 HOH A 21 321 53 HOH HOH . F 3 HOH A 22 322 54 HOH HOH . F 3 HOH A 23 323 57 HOH HOH . F 3 HOH A 24 324 60 HOH HOH . F 3 HOH A 25 325 61 HOH HOH . F 3 HOH A 26 326 62 HOH HOH . F 3 HOH A 27 327 65 HOH HOH . F 3 HOH A 28 328 72 HOH HOH . F 3 HOH A 29 329 75 HOH HOH . F 3 HOH A 30 330 79 HOH HOH . F 3 HOH A 31 331 80 HOH HOH . F 3 HOH A 32 332 81 HOH HOH . F 3 HOH A 33 333 84 HOH HOH . F 3 HOH A 34 334 86 HOH HOH . F 3 HOH A 35 335 87 HOH HOH . F 3 HOH A 36 336 88 HOH HOH . F 3 HOH A 37 337 92 HOH HOH . F 3 HOH A 38 338 93 HOH HOH . F 3 HOH A 39 339 98 HOH HOH . F 3 HOH A 40 340 103 HOH HOH . F 3 HOH A 41 341 104 HOH HOH . F 3 HOH A 42 342 107 HOH HOH . F 3 HOH A 43 343 108 HOH HOH . F 3 HOH A 44 344 111 HOH HOH . F 3 HOH A 45 345 114 HOH HOH . F 3 HOH A 46 346 117 HOH HOH . F 3 HOH A 47 347 118 HOH HOH . F 3 HOH A 48 348 119 HOH HOH . F 3 HOH A 49 349 120 HOH HOH . F 3 HOH A 50 350 121 HOH HOH . F 3 HOH A 51 351 122 HOH HOH . F 3 HOH A 52 352 123 HOH HOH . F 3 HOH A 53 353 124 HOH HOH . F 3 HOH A 54 354 125 HOH HOH . F 3 HOH A 55 355 126 HOH HOH . F 3 HOH A 56 356 127 HOH HOH . F 3 HOH A 57 357 129 HOH HOH . F 3 HOH A 58 358 130 HOH HOH . F 3 HOH A 59 359 131 HOH HOH . F 3 HOH A 60 360 133 HOH HOH . F 3 HOH A 61 361 134 HOH HOH . F 3 HOH A 62 362 136 HOH HOH . F 3 HOH A 63 363 137 HOH HOH . F 3 HOH A 64 364 138 HOH HOH . F 3 HOH A 65 365 139 HOH HOH . F 3 HOH A 66 366 140 HOH HOH . F 3 HOH A 67 367 142 HOH HOH . F 3 HOH A 68 368 147 HOH HOH . F 3 HOH A 69 369 149 HOH HOH . F 3 HOH A 70 370 150 HOH HOH . F 3 HOH A 71 371 151 HOH HOH . F 3 HOH A 72 372 152 HOH HOH . F 3 HOH A 73 373 153 HOH HOH . F 3 HOH A 74 374 154 HOH HOH . F 3 HOH A 75 375 155 HOH HOH . F 3 HOH A 76 376 158 HOH HOH . F 3 HOH A 77 377 160 HOH HOH . F 3 HOH A 78 378 162 HOH HOH . F 3 HOH A 79 379 166 HOH HOH . F 3 HOH A 80 380 169 HOH HOH . F 3 HOH A 81 381 171 HOH HOH . F 3 HOH A 82 382 173 HOH HOH . F 3 HOH A 83 383 174 HOH HOH . F 3 HOH A 84 384 175 HOH HOH . F 3 HOH A 85 385 177 HOH HOH . F 3 HOH A 86 386 178 HOH HOH . F 3 HOH A 87 387 179 HOH HOH . F 3 HOH A 88 388 180 HOH HOH . F 3 HOH A 89 389 181 HOH HOH . F 3 HOH A 90 390 182 HOH HOH . F 3 HOH A 91 391 183 HOH HOH . F 3 HOH A 92 392 184 HOH HOH . F 3 HOH A 93 393 186 HOH HOH . F 3 HOH A 94 394 187 HOH HOH . F 3 HOH A 95 395 188 HOH HOH . F 3 HOH A 96 396 189 HOH HOH . F 3 HOH A 97 397 190 HOH HOH . F 3 HOH A 98 398 191 HOH HOH . F 3 HOH A 99 399 192 HOH HOH . F 3 HOH A 100 400 193 HOH HOH . F 3 HOH A 101 401 194 HOH HOH . F 3 HOH A 102 402 195 HOH HOH . F 3 HOH A 103 403 196 HOH HOH . F 3 HOH A 104 404 222 HOH HOH . F 3 HOH A 105 405 223 HOH HOH . F 3 HOH A 106 406 224 HOH HOH . F 3 HOH A 107 407 225 HOH HOH . F 3 HOH A 108 408 227 HOH HOH . F 3 HOH A 109 409 228 HOH HOH . F 3 HOH A 110 410 230 HOH HOH . F 3 HOH A 111 411 232 HOH HOH . F 3 HOH A 112 412 233 HOH HOH . F 3 HOH A 113 413 237 HOH HOH . F 3 HOH A 114 414 239 HOH HOH . F 3 HOH A 115 415 240 HOH HOH . F 3 HOH A 116 416 242 HOH HOH . F 3 HOH A 117 417 243 HOH HOH . F 3 HOH A 118 418 244 HOH HOH . F 3 HOH A 119 419 245 HOH HOH . F 3 HOH A 120 420 255 HOH HOH . F 3 HOH A 121 421 258 HOH HOH . F 3 HOH A 122 422 259 HOH HOH . F 3 HOH A 123 423 261 HOH HOH . F 3 HOH A 124 424 262 HOH HOH . G 3 HOH B 1 301 1 HOH HOH . G 3 HOH B 2 302 3 HOH HOH . G 3 HOH B 3 303 4 HOH HOH . G 3 HOH B 4 304 7 HOH HOH . G 3 HOH B 5 305 9 HOH HOH . G 3 HOH B 6 306 10 HOH HOH . G 3 HOH B 7 307 13 HOH HOH . G 3 HOH B 8 308 14 HOH HOH . G 3 HOH B 9 309 17 HOH HOH . G 3 HOH B 10 310 18 HOH HOH . G 3 HOH B 11 311 19 HOH HOH . G 3 HOH B 12 312 22 HOH HOH . G 3 HOH B 13 313 23 HOH HOH . G 3 HOH B 14 314 25 HOH HOH . G 3 HOH B 15 315 26 HOH HOH . G 3 HOH B 16 316 27 HOH HOH . G 3 HOH B 17 317 28 HOH HOH . G 3 HOH B 18 318 30 HOH HOH . G 3 HOH B 19 319 31 HOH HOH . G 3 HOH B 20 320 32 HOH HOH . G 3 HOH B 21 321 33 HOH HOH . G 3 HOH B 22 322 34 HOH HOH . G 3 HOH B 23 323 35 HOH HOH . G 3 HOH B 24 324 36 HOH HOH . G 3 HOH B 25 325 42 HOH HOH . G 3 HOH B 26 326 43 HOH HOH . G 3 HOH B 27 327 44 HOH HOH . G 3 HOH B 28 328 47 HOH HOH . G 3 HOH B 29 329 48 HOH HOH . G 3 HOH B 30 330 49 HOH HOH . G 3 HOH B 31 331 51 HOH HOH . G 3 HOH B 32 332 52 HOH HOH . G 3 HOH B 33 333 55 HOH HOH . G 3 HOH B 34 334 56 HOH HOH . G 3 HOH B 35 335 58 HOH HOH . G 3 HOH B 36 336 59 HOH HOH . G 3 HOH B 37 337 63 HOH HOH . G 3 HOH B 38 338 64 HOH HOH . G 3 HOH B 39 339 66 HOH HOH . G 3 HOH B 40 340 67 HOH HOH . G 3 HOH B 41 341 68 HOH HOH . G 3 HOH B 42 342 69 HOH HOH . G 3 HOH B 43 343 70 HOH HOH . G 3 HOH B 44 344 71 HOH HOH . G 3 HOH B 45 345 73 HOH HOH . G 3 HOH B 46 346 74 HOH HOH . G 3 HOH B 47 347 76 HOH HOH . G 3 HOH B 48 348 77 HOH HOH . G 3 HOH B 49 349 78 HOH HOH . G 3 HOH B 50 350 82 HOH HOH . G 3 HOH B 51 351 83 HOH HOH . G 3 HOH B 52 352 85 HOH HOH . G 3 HOH B 53 353 89 HOH HOH . G 3 HOH B 54 354 90 HOH HOH . G 3 HOH B 55 355 91 HOH HOH . G 3 HOH B 56 356 94 HOH HOH . G 3 HOH B 57 357 95 HOH HOH . G 3 HOH B 58 358 96 HOH HOH . G 3 HOH B 59 359 97 HOH HOH . G 3 HOH B 60 360 99 HOH HOH . G 3 HOH B 61 361 100 HOH HOH . G 3 HOH B 62 362 101 HOH HOH . G 3 HOH B 63 363 102 HOH HOH . G 3 HOH B 64 364 105 HOH HOH . G 3 HOH B 65 365 106 HOH HOH . G 3 HOH B 66 366 109 HOH HOH . G 3 HOH B 67 367 110 HOH HOH . G 3 HOH B 68 368 112 HOH HOH . G 3 HOH B 69 369 113 HOH HOH . G 3 HOH B 70 370 115 HOH HOH . G 3 HOH B 71 371 116 HOH HOH . G 3 HOH B 72 372 128 HOH HOH . G 3 HOH B 73 373 132 HOH HOH . G 3 HOH B 74 374 135 HOH HOH . G 3 HOH B 75 375 141 HOH HOH . G 3 HOH B 76 376 143 HOH HOH . G 3 HOH B 77 377 144 HOH HOH . G 3 HOH B 78 378 145 HOH HOH . G 3 HOH B 79 379 146 HOH HOH . G 3 HOH B 80 380 148 HOH HOH . G 3 HOH B 81 381 156 HOH HOH . G 3 HOH B 82 382 157 HOH HOH . G 3 HOH B 83 383 159 HOH HOH . G 3 HOH B 84 384 161 HOH HOH . G 3 HOH B 85 385 163 HOH HOH . G 3 HOH B 86 386 164 HOH HOH . G 3 HOH B 87 387 165 HOH HOH . G 3 HOH B 88 388 167 HOH HOH . G 3 HOH B 89 389 168 HOH HOH . G 3 HOH B 90 390 170 HOH HOH . G 3 HOH B 91 391 172 HOH HOH . G 3 HOH B 92 392 176 HOH HOH . G 3 HOH B 93 393 185 HOH HOH . G 3 HOH B 94 394 197 HOH HOH . G 3 HOH B 95 395 198 HOH HOH . G 3 HOH B 96 396 199 HOH HOH . G 3 HOH B 97 397 200 HOH HOH . G 3 HOH B 98 398 201 HOH HOH . G 3 HOH B 99 399 202 HOH HOH . G 3 HOH B 100 400 203 HOH HOH . G 3 HOH B 101 401 204 HOH HOH . G 3 HOH B 102 402 205 HOH HOH . G 3 HOH B 103 403 206 HOH HOH . G 3 HOH B 104 404 207 HOH HOH . G 3 HOH B 105 405 208 HOH HOH . G 3 HOH B 106 406 209 HOH HOH . G 3 HOH B 107 407 210 HOH HOH . G 3 HOH B 108 408 211 HOH HOH . G 3 HOH B 109 409 212 HOH HOH . G 3 HOH B 110 410 213 HOH HOH . G 3 HOH B 111 411 214 HOH HOH . G 3 HOH B 112 412 215 HOH HOH . G 3 HOH B 113 413 216 HOH HOH . G 3 HOH B 114 414 217 HOH HOH . G 3 HOH B 115 415 218 HOH HOH . G 3 HOH B 116 416 219 HOH HOH . G 3 HOH B 117 417 220 HOH HOH . G 3 HOH B 118 418 221 HOH HOH . G 3 HOH B 119 419 226 HOH HOH . G 3 HOH B 120 420 229 HOH HOH . G 3 HOH B 121 421 231 HOH HOH . G 3 HOH B 122 422 234 HOH HOH . G 3 HOH B 123 423 235 HOH HOH . G 3 HOH B 124 424 236 HOH HOH . G 3 HOH B 125 425 238 HOH HOH . G 3 HOH B 126 426 241 HOH HOH . G 3 HOH B 127 427 246 HOH HOH . G 3 HOH B 128 428 247 HOH HOH . G 3 HOH B 129 429 248 HOH HOH . G 3 HOH B 130 430 249 HOH HOH . G 3 HOH B 131 431 250 HOH HOH . G 3 HOH B 132 432 251 HOH HOH . G 3 HOH B 133 433 252 HOH HOH . G 3 HOH B 134 434 253 HOH HOH . G 3 HOH B 135 435 254 HOH HOH . G 3 HOH B 136 436 256 HOH HOH . G 3 HOH B 137 437 257 HOH HOH . G 3 HOH B 138 438 260 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NGA . . . D 2 2.852 -26.492 3.931 1 11.26 ? C1 NGA 202 A 1 HETATM 2 C C2 NGA . . . D 2 3.616 -26.451 5.244 1 16.23 ? C2 NGA 202 A 1 HETATM 3 C C3 NGA . . . D 2 4.987 -27.102 5.048 1 21.13 ? C3 NGA 202 A 1 HETATM 4 C C4 NGA . . . D 2 4.921 -28.444 4.314 1 30.65 ? C4 NGA 202 A 1 HETATM 5 C C5 NGA . . . D 2 3.949 -28.354 3.122 1 17.97 ? C5 NGA 202 A 1 HETATM 6 C C6 NGA . . . D 2 3.812 -29.635 2.311 1 8.04 ? C6 NGA 202 A 1 HETATM 7 C C7 NGA . . . D 2 3.633 -24.616 6.856 1 31.37 ? C7 NGA 202 A 1 HETATM 8 C C8 NGA . . . D 2 3.137 -23.214 7.04 1 32.92 ? C8 NGA 202 A 1 HETATM 9 N N2 NGA . . . D 2 3.748 -25.056 5.611 1 18.52 ? N2 NGA 202 A 1 HETATM 10 O O1 NGA . . . D 2 1.579 -25.917 4.122 1 57.38 ? O1 NGA 202 A 1 HETATM 11 O O3 NGA . . . D 2 5.66 -27.26 6.263 1 20.92 ? O3 NGA 202 A 1 HETATM 12 O O4 NGA . . . D 2 4.677 -29.52 5.202 1 21.69 ? O4 NGA 202 A 1 HETATM 13 O O5 NGA . . . D 2 2.702 -27.83 3.51 1 26.47 ? O5 NGA 202 A 1 HETATM 14 O O6 NGA . . . D 2 4.784 -29.519 1.283 1 14.16 ? O6 NGA 202 A 1 HETATM 15 O O7 NGA . . . D 2 3.925 -25.298 7.834 1 43.82 ? O7 NGA 202 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 15 #