data_4G9Y # _model_server_result.job_id a5rzM5A2Q1jOPYjwGEruqA _model_server_result.datetime_utc '2025-01-10 20:24:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4g9y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4G9Y # _exptl.entry_id 4G9Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4G9Y _cell.length_a 102.771 _cell.length_b 102.771 _cell.length_c 100.306 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4G9Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_544 x,-y-1/2,-z-3/4 1 0 0 0 -1 0 0 0 -1 0 -51.3855 -75.2295 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 4G9Y _atom_sites.fract_transf_matrix[1][1] 0.00973 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00973 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009969 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 201 1 GOL GOL . C 3 HOH A 1 301 1 HOH HOH . C 3 HOH A 2 302 2 HOH HOH . C 3 HOH A 3 303 3 HOH HOH . C 3 HOH A 4 304 4 HOH HOH . C 3 HOH A 5 305 7 HOH HOH . C 3 HOH A 6 306 8 HOH HOH . C 3 HOH A 7 307 9 HOH HOH . C 3 HOH A 8 308 10 HOH HOH . C 3 HOH A 9 309 11 HOH HOH . C 3 HOH A 10 310 13 HOH HOH . C 3 HOH A 11 311 15 HOH HOH . C 3 HOH A 12 312 16 HOH HOH . C 3 HOH A 13 313 17 HOH HOH . C 3 HOH A 14 314 18 HOH HOH . C 3 HOH A 15 315 19 HOH HOH . C 3 HOH A 16 316 20 HOH HOH . C 3 HOH A 17 317 21 HOH HOH . C 3 HOH A 18 318 22 HOH HOH . C 3 HOH A 19 319 23 HOH HOH . C 3 HOH A 20 320 24 HOH HOH . C 3 HOH A 21 321 25 HOH HOH . C 3 HOH A 22 322 26 HOH HOH . C 3 HOH A 23 323 27 HOH HOH . C 3 HOH A 24 324 28 HOH HOH . C 3 HOH A 25 325 29 HOH HOH . C 3 HOH A 26 326 30 HOH HOH . C 3 HOH A 27 327 31 HOH HOH . C 3 HOH A 28 328 32 HOH HOH . C 3 HOH A 29 329 33 HOH HOH . C 3 HOH A 30 330 34 HOH HOH . C 3 HOH A 31 331 35 HOH HOH . C 3 HOH A 32 332 36 HOH HOH . C 3 HOH A 33 333 37 HOH HOH . C 3 HOH A 34 334 38 HOH HOH . C 3 HOH A 35 335 39 HOH HOH . C 3 HOH A 36 336 40 HOH HOH . C 3 HOH A 37 337 41 HOH HOH . C 3 HOH A 38 338 42 HOH HOH . C 3 HOH A 39 339 43 HOH HOH . C 3 HOH A 40 340 44 HOH HOH . C 3 HOH A 41 341 45 HOH HOH . C 3 HOH A 42 342 46 HOH HOH . C 3 HOH A 43 343 47 HOH HOH . C 3 HOH A 44 344 48 HOH HOH . C 3 HOH A 45 345 49 HOH HOH . C 3 HOH A 46 346 50 HOH HOH . C 3 HOH A 47 347 51 HOH HOH . C 3 HOH A 48 348 52 HOH HOH . C 3 HOH A 49 349 53 HOH HOH . C 3 HOH A 50 350 54 HOH HOH . C 3 HOH A 51 351 55 HOH HOH . C 3 HOH A 52 352 56 HOH HOH . C 3 HOH A 53 353 57 HOH HOH . C 3 HOH A 54 354 58 HOH HOH . C 3 HOH A 55 355 59 HOH HOH . C 3 HOH A 56 356 60 HOH HOH . C 3 HOH A 57 357 61 HOH HOH . C 3 HOH A 58 358 62 HOH HOH . C 3 HOH A 59 359 63 HOH HOH . C 3 HOH A 60 360 64 HOH HOH . C 3 HOH A 61 361 65 HOH HOH . C 3 HOH A 62 362 66 HOH HOH . C 3 HOH A 63 363 67 HOH HOH . C 3 HOH A 64 364 68 HOH HOH . C 3 HOH A 65 365 69 HOH HOH . C 3 HOH A 66 366 70 HOH HOH . C 3 HOH A 67 367 71 HOH HOH . C 3 HOH A 68 368 72 HOH HOH . C 3 HOH A 69 369 73 HOH HOH . C 3 HOH A 70 370 74 HOH HOH . C 3 HOH A 71 371 75 HOH HOH . C 3 HOH A 72 372 76 HOH HOH . C 3 HOH A 73 373 77 HOH HOH . C 3 HOH A 74 374 78 HOH HOH . C 3 HOH A 75 375 79 HOH HOH . C 3 HOH A 76 376 81 HOH HOH . C 3 HOH A 77 377 82 HOH HOH . C 3 HOH A 78 378 83 HOH HOH . C 3 HOH A 79 379 84 HOH HOH . C 3 HOH A 80 380 85 HOH HOH . C 3 HOH A 81 381 86 HOH HOH . C 3 HOH A 82 382 87 HOH HOH . C 3 HOH A 83 383 88 HOH HOH . C 3 HOH A 84 384 89 HOH HOH . C 3 HOH A 85 385 90 HOH HOH . C 3 HOH A 86 386 92 HOH HOH . C 3 HOH A 87 387 93 HOH HOH . C 3 HOH A 88 388 94 HOH HOH . C 3 HOH A 89 389 95 HOH HOH . C 3 HOH A 90 390 96 HOH HOH . C 3 HOH A 91 391 98 HOH HOH . C 3 HOH A 92 392 99 HOH HOH . C 3 HOH A 93 393 101 HOH HOH . C 3 HOH A 94 394 102 HOH HOH . C 3 HOH A 95 395 103 HOH HOH . C 3 HOH A 96 396 104 HOH HOH . C 3 HOH A 97 397 105 HOH HOH . C 3 HOH A 98 398 106 HOH HOH . C 3 HOH A 99 399 107 HOH HOH . C 3 HOH A 100 400 108 HOH HOH . C 3 HOH A 101 401 110 HOH HOH . C 3 HOH A 102 402 111 HOH HOH . C 3 HOH A 103 403 112 HOH HOH . C 3 HOH A 104 404 113 HOH HOH . C 3 HOH A 105 405 114 HOH HOH . C 3 HOH A 106 406 115 HOH HOH . C 3 HOH A 107 407 116 HOH HOH . C 3 HOH A 108 408 117 HOH HOH . C 3 HOH A 109 409 118 HOH HOH . C 3 HOH A 110 410 122 HOH HOH . C 3 HOH A 111 411 123 HOH HOH . C 3 HOH A 112 412 124 HOH HOH . C 3 HOH A 113 413 126 HOH HOH . C 3 HOH A 114 414 127 HOH HOH . C 3 HOH A 115 415 128 HOH HOH . C 3 HOH A 116 416 133 HOH HOH . C 3 HOH A 117 417 135 HOH HOH . C 3 HOH A 118 418 136 HOH HOH . C 3 HOH A 119 419 137 HOH HOH . C 3 HOH A 120 420 138 HOH HOH . C 3 HOH A 121 421 139 HOH HOH . C 3 HOH A 122 422 141 HOH HOH . C 3 HOH A 123 423 142 HOH HOH . C 3 HOH A 124 424 143 HOH HOH . C 3 HOH A 125 425 145 HOH HOH . C 3 HOH A 126 426 146 HOH HOH . C 3 HOH A 127 427 147 HOH HOH . C 3 HOH A 128 428 148 HOH HOH . C 3 HOH A 129 429 150 HOH HOH . C 3 HOH A 130 430 151 HOH HOH . C 3 HOH A 131 431 152 HOH HOH . C 3 HOH A 132 432 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -14.346 -35.234 -24.792 0.5 45.54 ? C1 GOL 201 A 1 HETATM 2 O O1 GOL . . . B 2 -14.301 -34.17 -25.715 0.5 45.73 ? O1 GOL 201 A 1 HETATM 3 C C2 GOL . . . B 2 -15.442 -36.215 -25.195 0.5 43.8 ? C2 GOL 201 A 1 HETATM 4 O O2 GOL . . . B 2 -16.705 -35.726 -24.786 0.5 41.39 ? O2 GOL 201 A 1 HETATM 5 C C3 GOL . . . B 2 -15.151 -37.573 -24.566 0.5 46.3 ? C3 GOL 201 A 1 HETATM 6 O O3 GOL . . . B 2 -16.269 -38.422 -24.717 0.5 47.21 ? O3 GOL 201 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 496 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #