data_4GAD
#
_model_server_result.job_id            KoVVjPPyJ4znHYpKCtmatw 
_model_server_result.datetime_utc      '2025-02-20 16:11:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4gad 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    4GAD 
#
_exptl.entry_id    4GAD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4GAD 
_cell.length_a            80.6 
_cell.length_b            97.33 
_cell.length_c            127.15 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4GAD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 22 A ASP 8 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.93 ? 
metalc ? metalc2 A OD1 ASP 23 A ASP 9 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
metalc ? metalc3 A OD1 ASN 106 A ASN 92 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? 
metalc ? metalc4 B OD1 ASN 106 B ASN 92 1_555 F MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4GAD 
_atom_sites.fract_transf_matrix[1][1]    0.012407 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010274 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007865 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 301 2 GOL GOL . 
D 3 MG A 1 302 1 MG MG . 
E 2 GOL B 1 301 1 GOL GOL . 
F 3 MG B 1 302 2 MG MG . 
G 4 HOH A 1 401 1 HOH HOH . 
G 4 HOH A 2 402 3 HOH HOH . 
G 4 HOH A 3 403 6 HOH HOH . 
G 4 HOH A 4 404 7 HOH HOH . 
G 4 HOH A 5 405 8 HOH HOH . 
G 4 HOH A 6 406 9 HOH HOH . 
G 4 HOH A 7 407 12 HOH HOH . 
G 4 HOH A 8 408 13 HOH HOH . 
G 4 HOH A 9 409 14 HOH HOH . 
G 4 HOH A 10 410 15 HOH HOH . 
G 4 HOH A 11 411 16 HOH HOH . 
G 4 HOH A 12 412 17 HOH HOH . 
G 4 HOH A 13 413 18 HOH HOH . 
G 4 HOH A 14 414 19 HOH HOH . 
G 4 HOH A 15 415 20 HOH HOH . 
G 4 HOH A 16 416 23 HOH HOH . 
G 4 HOH A 17 417 28 HOH HOH . 
G 4 HOH A 18 418 31 HOH HOH . 
G 4 HOH A 19 419 32 HOH HOH . 
G 4 HOH A 20 420 33 HOH HOH . 
G 4 HOH A 21 421 35 HOH HOH . 
G 4 HOH A 22 422 36 HOH HOH . 
G 4 HOH A 23 423 37 HOH HOH . 
G 4 HOH A 24 424 38 HOH HOH . 
G 4 HOH A 25 425 41 HOH HOH . 
G 4 HOH A 26 426 42 HOH HOH . 
G 4 HOH A 27 427 46 HOH HOH . 
G 4 HOH A 28 428 47 HOH HOH . 
G 4 HOH A 29 429 49 HOH HOH . 
G 4 HOH A 30 430 53 HOH HOH . 
G 4 HOH A 31 431 54 HOH HOH . 
G 4 HOH A 32 432 55 HOH HOH . 
G 4 HOH A 33 433 56 HOH HOH . 
G 4 HOH A 34 434 59 HOH HOH . 
G 4 HOH A 35 435 60 HOH HOH . 
G 4 HOH A 36 436 61 HOH HOH . 
G 4 HOH A 37 437 62 HOH HOH . 
G 4 HOH A 38 438 63 HOH HOH . 
G 4 HOH A 39 439 64 HOH HOH . 
G 4 HOH A 40 440 65 HOH HOH . 
G 4 HOH A 41 441 69 HOH HOH . 
G 4 HOH A 42 442 70 HOH HOH . 
G 4 HOH A 43 443 71 HOH HOH . 
G 4 HOH A 44 444 75 HOH HOH . 
G 4 HOH A 45 445 76 HOH HOH . 
G 4 HOH A 46 446 78 HOH HOH . 
G 4 HOH A 47 447 80 HOH HOH . 
G 4 HOH A 48 448 81 HOH HOH . 
G 4 HOH A 49 449 85 HOH HOH . 
G 4 HOH A 50 450 86 HOH HOH . 
G 4 HOH A 51 451 89 HOH HOH . 
G 4 HOH A 52 452 92 HOH HOH . 
G 4 HOH A 53 453 94 HOH HOH . 
G 4 HOH A 54 454 95 HOH HOH . 
G 4 HOH A 55 455 96 HOH HOH . 
G 4 HOH A 56 456 97 HOH HOH . 
G 4 HOH A 57 457 98 HOH HOH . 
G 4 HOH A 58 458 101 HOH HOH . 
G 4 HOH A 59 459 104 HOH HOH . 
G 4 HOH A 60 460 105 HOH HOH . 
G 4 HOH A 61 461 106 HOH HOH . 
G 4 HOH A 62 462 110 HOH HOH . 
G 4 HOH A 63 463 111 HOH HOH . 
G 4 HOH A 64 464 112 HOH HOH . 
G 4 HOH A 65 465 113 HOH HOH . 
G 4 HOH A 66 466 114 HOH HOH . 
G 4 HOH A 67 467 115 HOH HOH . 
G 4 HOH A 68 468 126 HOH HOH . 
G 4 HOH A 69 469 127 HOH HOH . 
G 4 HOH A 70 470 128 HOH HOH . 
G 4 HOH A 71 471 129 HOH HOH . 
G 4 HOH A 72 472 134 HOH HOH . 
G 4 HOH A 73 473 138 HOH HOH . 
G 4 HOH A 74 474 139 HOH HOH . 
G 4 HOH A 75 475 141 HOH HOH . 
G 4 HOH A 76 476 142 HOH HOH . 
G 4 HOH A 77 477 143 HOH HOH . 
G 4 HOH A 78 478 144 HOH HOH . 
G 4 HOH A 79 479 145 HOH HOH . 
G 4 HOH A 80 480 147 HOH HOH . 
G 4 HOH A 81 481 151 HOH HOH . 
G 4 HOH A 82 482 152 HOH HOH . 
G 4 HOH A 83 483 153 HOH HOH . 
G 4 HOH A 84 484 156 HOH HOH . 
G 4 HOH A 85 485 157 HOH HOH . 
G 4 HOH A 86 486 158 HOH HOH . 
G 4 HOH A 87 487 159 HOH HOH . 
G 4 HOH A 88 488 160 HOH HOH . 
G 4 HOH A 89 489 166 HOH HOH . 
G 4 HOH A 90 490 167 HOH HOH . 
G 4 HOH A 91 491 168 HOH HOH . 
G 4 HOH A 92 492 169 HOH HOH . 
G 4 HOH A 93 493 171 HOH HOH . 
G 4 HOH A 94 494 173 HOH HOH . 
G 4 HOH A 95 495 175 HOH HOH . 
G 4 HOH A 96 496 176 HOH HOH . 
G 4 HOH A 97 497 177 HOH HOH . 
G 4 HOH A 98 498 178 HOH HOH . 
G 4 HOH A 99 499 179 HOH HOH . 
G 4 HOH A 100 500 181 HOH HOH . 
G 4 HOH A 101 501 182 HOH HOH . 
G 4 HOH A 102 502 183 HOH HOH . 
G 4 HOH A 103 503 186 HOH HOH . 
G 4 HOH A 104 504 187 HOH HOH . 
G 4 HOH A 105 505 188 HOH HOH . 
G 4 HOH A 106 506 191 HOH HOH . 
G 4 HOH A 107 507 193 HOH HOH . 
G 4 HOH A 108 508 195 HOH HOH . 
G 4 HOH A 109 509 197 HOH HOH . 
G 4 HOH A 110 510 199 HOH HOH . 
G 4 HOH A 111 511 200 HOH HOH . 
G 4 HOH A 112 512 201 HOH HOH . 
G 4 HOH A 113 513 204 HOH HOH . 
G 4 HOH A 114 514 205 HOH HOH . 
G 4 HOH A 115 515 206 HOH HOH . 
G 4 HOH A 116 516 207 HOH HOH . 
G 4 HOH A 117 517 209 HOH HOH . 
G 4 HOH A 118 518 210 HOH HOH . 
G 4 HOH A 119 519 211 HOH HOH . 
G 4 HOH A 120 520 212 HOH HOH . 
G 4 HOH A 121 521 217 HOH HOH . 
G 4 HOH A 122 522 218 HOH HOH . 
G 4 HOH A 123 523 219 HOH HOH . 
G 4 HOH A 124 524 223 HOH HOH . 
G 4 HOH A 125 525 224 HOH HOH . 
G 4 HOH A 126 526 225 HOH HOH . 
G 4 HOH A 127 527 227 HOH HOH . 
G 4 HOH A 128 528 228 HOH HOH . 
G 4 HOH A 129 529 229 HOH HOH . 
G 4 HOH A 130 530 230 HOH HOH . 
H 4 HOH B 1 401 2 HOH HOH . 
H 4 HOH B 2 402 4 HOH HOH . 
H 4 HOH B 3 403 5 HOH HOH . 
H 4 HOH B 4 404 10 HOH HOH . 
H 4 HOH B 5 405 11 HOH HOH . 
H 4 HOH B 6 406 21 HOH HOH . 
H 4 HOH B 7 407 22 HOH HOH . 
H 4 HOH B 8 408 24 HOH HOH . 
H 4 HOH B 9 409 25 HOH HOH . 
H 4 HOH B 10 410 26 HOH HOH . 
H 4 HOH B 11 411 27 HOH HOH . 
H 4 HOH B 12 412 29 HOH HOH . 
H 4 HOH B 13 413 30 HOH HOH . 
H 4 HOH B 14 414 34 HOH HOH . 
H 4 HOH B 15 415 39 HOH HOH . 
H 4 HOH B 16 416 40 HOH HOH . 
H 4 HOH B 17 417 43 HOH HOH . 
H 4 HOH B 18 418 44 HOH HOH . 
H 4 HOH B 19 419 45 HOH HOH . 
H 4 HOH B 20 420 48 HOH HOH . 
H 4 HOH B 21 421 50 HOH HOH . 
H 4 HOH B 22 422 51 HOH HOH . 
H 4 HOH B 23 423 52 HOH HOH . 
H 4 HOH B 24 424 57 HOH HOH . 
H 4 HOH B 25 425 58 HOH HOH . 
H 4 HOH B 26 426 66 HOH HOH . 
H 4 HOH B 27 427 67 HOH HOH . 
H 4 HOH B 28 428 68 HOH HOH . 
H 4 HOH B 29 429 72 HOH HOH . 
H 4 HOH B 30 430 73 HOH HOH . 
H 4 HOH B 31 431 74 HOH HOH . 
H 4 HOH B 32 432 77 HOH HOH . 
H 4 HOH B 33 433 79 HOH HOH . 
H 4 HOH B 34 434 82 HOH HOH . 
H 4 HOH B 35 435 83 HOH HOH . 
H 4 HOH B 36 436 84 HOH HOH . 
H 4 HOH B 37 437 87 HOH HOH . 
H 4 HOH B 38 438 88 HOH HOH . 
H 4 HOH B 39 439 90 HOH HOH . 
H 4 HOH B 40 440 91 HOH HOH . 
H 4 HOH B 41 441 93 HOH HOH . 
H 4 HOH B 42 442 99 HOH HOH . 
H 4 HOH B 43 443 100 HOH HOH . 
H 4 HOH B 44 444 102 HOH HOH . 
H 4 HOH B 45 445 103 HOH HOH . 
H 4 HOH B 46 446 107 HOH HOH . 
H 4 HOH B 47 447 108 HOH HOH . 
H 4 HOH B 48 448 109 HOH HOH . 
H 4 HOH B 49 449 116 HOH HOH . 
H 4 HOH B 50 450 117 HOH HOH . 
H 4 HOH B 51 451 118 HOH HOH . 
H 4 HOH B 52 452 119 HOH HOH . 
H 4 HOH B 53 453 120 HOH HOH . 
H 4 HOH B 54 454 121 HOH HOH . 
H 4 HOH B 55 455 122 HOH HOH . 
H 4 HOH B 56 456 123 HOH HOH . 
H 4 HOH B 57 457 124 HOH HOH . 
H 4 HOH B 58 458 125 HOH HOH . 
H 4 HOH B 59 459 130 HOH HOH . 
H 4 HOH B 60 460 131 HOH HOH . 
H 4 HOH B 61 461 132 HOH HOH . 
H 4 HOH B 62 462 133 HOH HOH . 
H 4 HOH B 63 463 135 HOH HOH . 
H 4 HOH B 64 464 136 HOH HOH . 
H 4 HOH B 65 465 137 HOH HOH . 
H 4 HOH B 66 466 140 HOH HOH . 
H 4 HOH B 67 467 146 HOH HOH . 
H 4 HOH B 68 468 148 HOH HOH . 
H 4 HOH B 69 469 149 HOH HOH . 
H 4 HOH B 70 470 150 HOH HOH . 
H 4 HOH B 71 471 154 HOH HOH . 
H 4 HOH B 72 472 155 HOH HOH . 
H 4 HOH B 73 473 161 HOH HOH . 
H 4 HOH B 74 474 162 HOH HOH . 
H 4 HOH B 75 475 163 HOH HOH . 
H 4 HOH B 76 476 164 HOH HOH . 
H 4 HOH B 77 477 165 HOH HOH . 
H 4 HOH B 78 478 170 HOH HOH . 
H 4 HOH B 79 479 172 HOH HOH . 
H 4 HOH B 80 480 174 HOH HOH . 
H 4 HOH B 81 481 180 HOH HOH . 
H 4 HOH B 82 482 184 HOH HOH . 
H 4 HOH B 83 483 185 HOH HOH . 
H 4 HOH B 84 484 189 HOH HOH . 
H 4 HOH B 85 485 190 HOH HOH . 
H 4 HOH B 86 486 192 HOH HOH . 
H 4 HOH B 87 487 194 HOH HOH . 
H 4 HOH B 88 488 196 HOH HOH . 
H 4 HOH B 89 489 198 HOH HOH . 
H 4 HOH B 90 490 202 HOH HOH . 
H 4 HOH B 91 491 203 HOH HOH . 
H 4 HOH B 92 492 208 HOH HOH . 
H 4 HOH B 93 493 213 HOH HOH . 
H 4 HOH B 94 494 214 HOH HOH . 
H 4 HOH B 95 495 215 HOH HOH . 
H 4 HOH B 96 496 216 HOH HOH . 
H 4 HOH B 97 497 220 HOH HOH . 
H 4 HOH B 98 498 221 HOH HOH . 
H 4 HOH B 99 499 222 HOH HOH . 
H 4 HOH B 100 500 226 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 2 16.344 -10.432 17.167 1 58.23 ? C1 GOL 301 A 1 
HETATM 2 O O1 GOL . . . C 2 16.89 -9.13 16.913 1 50.07 ? O1 GOL 301 A 1 
HETATM 3 C C2 GOL . . . C 2 17.425 -11.398 17.659 1 62.04 ? C2 GOL 301 A 1 
HETATM 4 O O2 GOL . . . C 2 18.641 -10.693 17.94 1 66.15 ? O2 GOL 301 A 1 
HETATM 5 C C3 GOL . . . C 2 17.725 -12.456 16.603 1 65.38 ? C3 GOL 301 A 1 
HETATM 6 O O3 GOL . . . C 2 18.131 -13.684 17.233 1 65.99 ? O3 GOL 301 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#