data_4GAE # _model_server_result.job_id hKvl8Km4gDapVW9r9MGfaQ _model_server_result.datetime_utc '2024-11-24 11:09:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gae # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 4GAE # _exptl.entry_id 4GAE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 274.21 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(1R)-3-[acetyl(hydroxy)amino]-1-(pyridin-4-yl)propyl]phosphonic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.5 _cell.angle_gamma 90 _cell.entry_id 4GAE _cell.length_a 51.36 _cell.length_b 77.28 _cell.length_c 109.41 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GAE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 169 A ASP 231 1_555 F MN MN . A MN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc2 A OE1 GLU 171 A GLU 233 1_555 F MN MN . A MN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc3 A OD1 ASP 180 A ASP 242 1_555 N MN MN . B MN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc4 A OE2 GLU 253 A GLU 315 1_555 F MN MN . A MN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc5 D O2 FOB . A FOB 502 1_555 F MN MN . A MN 504 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc6 D O1 FOB . A FOB 502 1_555 F MN MN . A MN 504 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc7 E O2 FOQ . A FOQ 503 1_555 F MN MN . A MN 504 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc8 E O1 FOQ . A FOQ 503 1_555 F MN MN . A MN 504 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc9 S O HOH . A HOH 1514 1_555 N MN MN . B MN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc10 S O HOH . A HOH 1542 1_555 N MN MN . B MN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc11 B OD1 ASP 169 B ASP 231 1_555 M MN MN . B MN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc12 B OE1 GLU 171 B GLU 233 1_555 M MN MN . B MN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc13 B O GLN 177 B GLN 239 1_555 N MN MN . B MN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc14 B O LEU 179 B LEU 241 1_555 N MN MN . B MN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc15 B OE2 GLU 253 B GLU 315 1_555 M MN MN . B MN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc16 B OD1 ASN 390 B ASN 452 1_555 O MN MN . B MN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc17 K O2 FOB . B FOB 502 1_555 M MN MN . B MN 504 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc18 K O1 FOB . B FOB 502 1_555 M MN MN . B MN 504 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc19 L O2 FOQ . B FOQ 503 1_555 M MN MN . B MN 504 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc20 L O1 FOQ . B FOQ 503 1_555 M MN MN . B MN 504 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc21 N MN MN . B MN 505 1_555 T O HOH . B HOH 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc22 N MN MN . B MN 505 1_555 T O HOH . B HOH 654 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc23 O MN MN . B MN 506 1_555 T O HOH . B HOH 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? # _chem_comp.formula 'C10 H15 N2 O5 P' _chem_comp.formula_weight 274.21 _chem_comp.id FOB _chem_comp.mon_nstd_flag . _chem_comp.name '[(1R)-3-[acetyl(hydroxy)amino]-1-(pyridin-4-yl)propyl]phosphonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OP2 PA1 FOB doub 98 n n OP3 PA1 FOB sing 99 n n PA1 OP1 FOB sing 100 n n PA1 C4 FOB sing 101 n n C3 C4 FOB sing 102 n n C3 C2 FOB sing 103 n n C4 CG FOB sing 104 n n O2 N1 FOB sing 105 n n C2 N1 FOB sing 106 n n N1 C1 FOB sing 107 n n CG CD1 FOB doub 108 n y CG CD2 FOB sing 109 n y CD1 CE1 FOB sing 110 n y CD2 CE2 FOB doub 111 n y C1 O1 FOB doub 112 n n C1 CH3 FOB sing 113 n n CE1 NZ FOB doub 114 n y CE2 NZ FOB sing 115 n y CH3 H1 FOB sing 116 n n CH3 H2 FOB sing 117 n n CH3 H3 FOB sing 118 n n O2 H4 FOB sing 119 n n C2 H5 FOB sing 120 n n C2 H6 FOB sing 121 n n C3 H7 FOB sing 122 n n C3 H8 FOB sing 123 n n C4 H9 FOB sing 124 n n OP1 H10 FOB sing 125 n n OP3 H11 FOB sing 126 n n CD1 H12 FOB sing 127 n n CD2 H13 FOB sing 128 n n CE1 H14 FOB sing 129 n n CE2 H15 FOB sing 130 n n # _atom_sites.entry_id 4GAE _atom_sites.fract_transf_matrix[1][1] 0.01947 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00051 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01294 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009143 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 501 501 NDP NDP . D 3 FOB A 1 502 601 FOB FOB . E 4 FOQ A 1 503 601 FOQ FOQ . F 5 MN A 1 504 701 MN MN . G 6 CL A 1 505 801 CL CL . H 7 ACT A 1 506 902 ACT ACT . I 8 EDO A 1 507 1003 EDO EDO . J 2 NDP B 1 501 502 NDP NDP . K 3 FOB B 1 502 602 FOB FOB . L 4 FOQ B 1 503 602 FOQ FOQ . M 5 MN B 1 504 702 MN MN . N 5 MN B 1 505 703 MN MN . O 5 MN B 1 506 704 MN MN . P 7 ACT B 1 507 901 ACT ACT . Q 8 EDO B 1 508 1001 EDO EDO . R 8 EDO B 1 509 1002 EDO EDO . S 9 HOH A 1 1501 1501 HOH HOH . S 9 HOH A 2 1502 1502 HOH HOH . S 9 HOH A 3 1503 1503 HOH HOH . S 9 HOH A 4 1504 1504 HOH HOH . S 9 HOH A 5 1505 1505 HOH HOH . S 9 HOH A 6 1506 1511 HOH HOH . S 9 HOH A 7 1507 1514 HOH HOH . S 9 HOH A 8 1508 1517 HOH HOH . S 9 HOH A 9 1509 1518 HOH HOH . S 9 HOH A 10 1510 1519 HOH HOH . S 9 HOH A 11 1511 1520 HOH HOH . S 9 HOH A 12 1512 1521 HOH HOH . S 9 HOH A 13 1513 1523 HOH HOH . S 9 HOH A 14 1514 1525 HOH HOH . S 9 HOH A 15 1515 1526 HOH HOH . S 9 HOH A 16 1516 1527 HOH HOH . S 9 HOH A 17 1517 1528 HOH HOH . S 9 HOH A 18 1518 1529 HOH HOH . S 9 HOH A 19 1519 1530 HOH HOH . S 9 HOH A 20 1520 1534 HOH HOH . S 9 HOH A 21 1521 1535 HOH HOH . S 9 HOH A 22 1522 1536 HOH HOH . S 9 HOH A 23 1523 1537 HOH HOH . S 9 HOH A 24 1524 1539 HOH HOH . S 9 HOH A 25 1525 1542 HOH HOH . S 9 HOH A 26 1526 1543 HOH HOH . S 9 HOH A 27 1527 1550 HOH HOH . S 9 HOH A 28 1528 1552 HOH HOH . S 9 HOH A 29 1529 1559 HOH HOH . S 9 HOH A 30 1530 1561 HOH HOH . S 9 HOH A 31 1531 1562 HOH HOH . S 9 HOH A 32 1532 1563 HOH HOH . S 9 HOH A 33 1533 1566 HOH HOH . S 9 HOH A 34 1534 1567 HOH HOH . S 9 HOH A 35 1535 1568 HOH HOH . S 9 HOH A 36 1536 1574 HOH HOH . S 9 HOH A 37 1537 1575 HOH HOH . S 9 HOH A 38 1538 1579 HOH HOH . S 9 HOH A 39 1539 1582 HOH HOH . S 9 HOH A 40 1540 1583 HOH HOH . S 9 HOH A 41 1541 1587 HOH HOH . S 9 HOH A 42 1542 1590 HOH HOH . S 9 HOH A 43 1543 1591 HOH HOH . S 9 HOH A 44 1544 1592 HOH HOH . S 9 HOH A 45 1545 1595 HOH HOH . S 9 HOH A 46 1546 1597 HOH HOH . S 9 HOH A 47 1547 1598 HOH HOH . S 9 HOH A 48 1548 1602 HOH HOH . S 9 HOH A 49 1549 1604 HOH HOH . S 9 HOH A 50 1550 1605 HOH HOH . S 9 HOH A 51 1551 1610 HOH HOH . S 9 HOH A 52 1552 1613 HOH HOH . S 9 HOH A 53 1553 1615 HOH HOH . S 9 HOH A 54 1554 1617 HOH HOH . S 9 HOH A 55 1555 1619 HOH HOH . S 9 HOH A 56 1556 1620 HOH HOH . S 9 HOH A 57 1557 1621 HOH HOH . S 9 HOH A 58 1558 1623 HOH HOH . S 9 HOH A 59 1559 1624 HOH HOH . S 9 HOH A 60 1560 1625 HOH HOH . S 9 HOH A 61 1561 1626 HOH HOH . S 9 HOH A 62 1562 1627 HOH HOH . S 9 HOH A 63 1563 1628 HOH HOH . S 9 HOH A 64 1564 1630 HOH HOH . S 9 HOH A 65 1565 1634 HOH HOH . S 9 HOH A 66 1566 1636 HOH HOH . S 9 HOH A 67 1567 1637 HOH HOH . T 9 HOH B 1 601 1506 HOH HOH . T 9 HOH B 2 602 1507 HOH HOH . T 9 HOH B 3 603 1508 HOH HOH . T 9 HOH B 4 604 1509 HOH HOH . T 9 HOH B 5 605 1510 HOH HOH . T 9 HOH B 6 606 1512 HOH HOH . T 9 HOH B 7 607 1513 HOH HOH . T 9 HOH B 8 608 1515 HOH HOH . T 9 HOH B 9 609 1516 HOH HOH . T 9 HOH B 10 610 1522 HOH HOH . T 9 HOH B 11 611 1524 HOH HOH . T 9 HOH B 12 612 1531 HOH HOH . T 9 HOH B 13 613 1532 HOH HOH . T 9 HOH B 14 614 1533 HOH HOH . T 9 HOH B 15 615 1538 HOH HOH . T 9 HOH B 16 616 1540 HOH HOH . T 9 HOH B 17 617 1541 HOH HOH . T 9 HOH B 18 618 1544 HOH HOH . T 9 HOH B 19 619 1545 HOH HOH . T 9 HOH B 20 620 1546 HOH HOH . T 9 HOH B 21 621 1547 HOH HOH . T 9 HOH B 22 622 1548 HOH HOH . T 9 HOH B 23 623 1549 HOH HOH . T 9 HOH B 24 624 1551 HOH HOH . T 9 HOH B 25 625 1553 HOH HOH . T 9 HOH B 26 626 1554 HOH HOH . T 9 HOH B 27 627 1555 HOH HOH . T 9 HOH B 28 628 1556 HOH HOH . T 9 HOH B 29 629 1557 HOH HOH . T 9 HOH B 30 630 1558 HOH HOH . T 9 HOH B 31 631 1560 HOH HOH . T 9 HOH B 32 632 1564 HOH HOH . T 9 HOH B 33 633 1565 HOH HOH . T 9 HOH B 34 634 1569 HOH HOH . T 9 HOH B 35 635 1570 HOH HOH . T 9 HOH B 36 636 1571 HOH HOH . T 9 HOH B 37 637 1572 HOH HOH . T 9 HOH B 38 638 1573 HOH HOH . T 9 HOH B 39 639 1576 HOH HOH . T 9 HOH B 40 640 1577 HOH HOH . T 9 HOH B 41 641 1578 HOH HOH . T 9 HOH B 42 642 1580 HOH HOH . T 9 HOH B 43 643 1581 HOH HOH . T 9 HOH B 44 644 1584 HOH HOH . T 9 HOH B 45 645 1585 HOH HOH . T 9 HOH B 46 646 1586 HOH HOH . T 9 HOH B 47 647 1588 HOH HOH . T 9 HOH B 48 648 1589 HOH HOH . T 9 HOH B 49 649 1593 HOH HOH . T 9 HOH B 50 650 1594 HOH HOH . T 9 HOH B 51 651 1596 HOH HOH . T 9 HOH B 52 652 1599 HOH HOH . T 9 HOH B 53 653 1600 HOH HOH . T 9 HOH B 54 654 1601 HOH HOH . T 9 HOH B 55 655 1603 HOH HOH . T 9 HOH B 56 656 1606 HOH HOH . T 9 HOH B 57 657 1607 HOH HOH . T 9 HOH B 58 658 1608 HOH HOH . T 9 HOH B 59 659 1609 HOH HOH . T 9 HOH B 60 660 1611 HOH HOH . T 9 HOH B 61 661 1612 HOH HOH . T 9 HOH B 62 662 1614 HOH HOH . T 9 HOH B 63 663 1616 HOH HOH . T 9 HOH B 64 664 1618 HOH HOH . T 9 HOH B 65 665 1622 HOH HOH . T 9 HOH B 66 666 1629 HOH HOH . T 9 HOH B 67 667 1631 HOH HOH . T 9 HOH B 68 668 1632 HOH HOH . T 9 HOH B 69 669 1633 HOH HOH . T 9 HOH B 70 670 1635 HOH HOH . T 9 HOH B 71 671 1638 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CH3 FOB . A . D 3 10.221 -15.622 17.493 0.5 30.05 ? CH3 FOB 502 A 1 HETATM 2 O O2 FOB . A . D 3 8.806 -14.89 14.088 0.5 28.94 ? O2 FOB 502 A 1 HETATM 3 N N1 FOB . A . D 3 9.621 -15.434 15.098 0.5 31.11 ? N1 FOB 502 A 1 HETATM 4 C C1 FOB . A . D 3 9.415 -15.09 16.333 0.5 31.46 ? C1 FOB 502 A 1 HETATM 5 O O1 FOB . A . D 3 8.527 -14.281 16.538 0.5 30.9 ? O1 FOB 502 A 1 HETATM 6 C C2 FOB . A . D 3 10.668 -16.366 14.695 0.5 31.51 ? C2 FOB 502 A 1 HETATM 7 C C3 FOB . A . D 3 11.543 -15.394 13.88 0.5 33.57 ? C3 FOB 502 A 1 HETATM 8 C C4 FOB . A . D 3 13.007 -15.735 13.886 0.5 35.61 ? C4 FOB 502 A 1 HETATM 9 P PA1 FOB . A . D 3 13.863 -14.581 12.926 0.5 34.89 ? PA1 FOB 502 A 1 HETATM 10 O OP1 FOB . A . D 3 14.128 -13.345 13.716 0.5 36.4 ? OP1 FOB 502 A 1 HETATM 11 O OP2 FOB . A . D 3 12.973 -14.319 11.74 0.5 37.23 ? OP2 FOB 502 A 1 HETATM 12 O OP3 FOB . A . D 3 15.108 -15.343 12.568 0.5 36.36 ? OP3 FOB 502 A 1 HETATM 13 C CG FOB . A . D 3 13.565 -15.773 15.347 0.5 36.12 ? CG FOB 502 A 1 HETATM 14 C CD1 FOB . A . D 3 14.232 -16.935 15.79 0.5 37.3 ? CD1 FOB 502 A 1 HETATM 15 C CD2 FOB . A . D 3 13.419 -14.68 16.256 0.5 37.82 ? CD2 FOB 502 A 1 HETATM 16 C CE1 FOB . A . D 3 14.727 -16.978 17.102 0.5 38.17 ? CE1 FOB 502 A 1 HETATM 17 C CE2 FOB . A . D 3 13.94 -14.797 17.554 0.5 38.25 ? CE2 FOB 502 A 1 HETATM 18 N NZ FOB . A . D 3 14.567 -15.925 17.929 0.5 39.02 ? NZ FOB 502 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 18 #