data_4GAK # _model_server_result.job_id f98SHs6IFdfQXsC_2r5ijA _model_server_result.datetime_utc '2025-03-01 07:32:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gak # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4GAK # _exptl.entry_id 4GAK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GAK _cell.length_a 61.657 _cell.length_b 61.657 _cell.length_c 155.945 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GAK _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 155.945 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 3 A ALA 0 1_555 A N MSE 4 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C MSE 4 A MSE 1 1_555 A N ALA 5 A ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C ARG 24 A ARG 21 1_555 A N MSE 25 A MSE 22 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C ARG 24 A ARG 21 1_555 A N MSE 25 A MSE 22 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale5 A C MSE 25 A MSE 22 1_555 A N SER 26 A SER 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale6 A C LEU 30 A LEU 27 1_555 A N MSE 31 A MSE 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale7 A C MSE 31 A MSE 28 1_555 A N ASN 32 A ASN 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale8 A C LEU 33 A LEU 30 1_555 A N MSE 34 A MSE 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 A C MSE 34 A MSE 31 1_555 A N GLN 35 A GLN 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale10 A C TRP 59 A TRP 56 1_555 A N MSE 60 A MSE 57 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.329 ? covale ? covale11 A C TRP 59 A TRP 56 1_555 A N MSE 60 A MSE 57 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.333 ? covale ? covale12 A C MSE 60 A MSE 57 1_555 A N LEU 61 A LEU 58 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 A C MSE 60 A MSE 57 1_555 A N LEU 61 A LEU 58 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale14 A C LEU 61 A LEU 58 1_555 A N MSE 62 A MSE 59 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.331 ? covale ? covale15 A C LEU 61 A LEU 58 1_555 A N MSE 62 A MSE 59 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.328 ? covale ? covale16 A C MSE 62 A MSE 59 1_555 A N ARG 63 A ARG 60 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale17 A C MSE 62 A MSE 59 1_555 A N ARG 63 A ARG 60 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale18 A C LEU 80 A LEU 77 1_555 A N MSE 81 A MSE 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale19 A C MSE 81 A MSE 78 1_555 A N THR 82 A THR 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale20 A C SER 117 A SER 114 1_555 A N MSE 118 A MSE 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale21 A C MSE 118 A MSE 115 1_555 A N GLU 119 A GLU 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale22 A C SER 122 A SER 119 1_555 A N MSE 123 A MSE 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale23 A C MSE 123 A MSE 120 1_555 A N VAL 124 A VAL 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4GAK _atom_sites.fract_transf_matrix[1][1] 0.016219 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016219 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006413 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 301 301 GOL GOL . C 2 GOL A 1 302 302 GOL GOL . D 3 CL A 1 303 303 CL CL . E 4 HOH A 1 401 1 HOH HOH . E 4 HOH A 2 402 2 HOH HOH . E 4 HOH A 3 403 3 HOH HOH . E 4 HOH A 4 404 4 HOH HOH . E 4 HOH A 5 405 5 HOH HOH . E 4 HOH A 6 406 6 HOH HOH . E 4 HOH A 7 407 7 HOH HOH . E 4 HOH A 8 408 8 HOH HOH . E 4 HOH A 9 409 9 HOH HOH . E 4 HOH A 10 410 10 HOH HOH . E 4 HOH A 11 411 11 HOH HOH . E 4 HOH A 12 412 12 HOH HOH . E 4 HOH A 13 413 13 HOH HOH . E 4 HOH A 14 414 14 HOH HOH . E 4 HOH A 15 415 15 HOH HOH . E 4 HOH A 16 416 16 HOH HOH . E 4 HOH A 17 417 17 HOH HOH . E 4 HOH A 18 418 18 HOH HOH . E 4 HOH A 19 419 19 HOH HOH . E 4 HOH A 20 420 20 HOH HOH . E 4 HOH A 21 421 21 HOH HOH . E 4 HOH A 22 422 22 HOH HOH . E 4 HOH A 23 423 23 HOH HOH . E 4 HOH A 24 424 24 HOH HOH . E 4 HOH A 25 425 25 HOH HOH . E 4 HOH A 26 426 26 HOH HOH . E 4 HOH A 27 427 27 HOH HOH . E 4 HOH A 28 428 28 HOH HOH . E 4 HOH A 29 429 29 HOH HOH . E 4 HOH A 30 430 30 HOH HOH . E 4 HOH A 31 431 31 HOH HOH . E 4 HOH A 32 432 32 HOH HOH . E 4 HOH A 33 433 33 HOH HOH . E 4 HOH A 34 434 34 HOH HOH . E 4 HOH A 35 435 35 HOH HOH . E 4 HOH A 36 436 36 HOH HOH . E 4 HOH A 37 437 37 HOH HOH . E 4 HOH A 38 438 38 HOH HOH . E 4 HOH A 39 439 39 HOH HOH . E 4 HOH A 40 440 40 HOH HOH . E 4 HOH A 41 441 41 HOH HOH . E 4 HOH A 42 442 42 HOH HOH . E 4 HOH A 43 443 43 HOH HOH . E 4 HOH A 44 444 44 HOH HOH . E 4 HOH A 45 445 45 HOH HOH . E 4 HOH A 46 446 46 HOH HOH . E 4 HOH A 47 447 47 HOH HOH . E 4 HOH A 48 448 48 HOH HOH . E 4 HOH A 49 449 49 HOH HOH . E 4 HOH A 50 450 50 HOH HOH . E 4 HOH A 51 451 51 HOH HOH . E 4 HOH A 52 452 52 HOH HOH . E 4 HOH A 53 453 53 HOH HOH . E 4 HOH A 54 454 54 HOH HOH . E 4 HOH A 55 455 55 HOH HOH . E 4 HOH A 56 456 56 HOH HOH . E 4 HOH A 57 457 57 HOH HOH . E 4 HOH A 58 458 58 HOH HOH . E 4 HOH A 59 459 59 HOH HOH . E 4 HOH A 60 460 60 HOH HOH . E 4 HOH A 61 461 61 HOH HOH . E 4 HOH A 62 462 62 HOH HOH . E 4 HOH A 63 463 63 HOH HOH . E 4 HOH A 64 464 64 HOH HOH . E 4 HOH A 65 465 65 HOH HOH . E 4 HOH A 66 466 66 HOH HOH . E 4 HOH A 67 467 67 HOH HOH . E 4 HOH A 68 468 68 HOH HOH . E 4 HOH A 69 469 69 HOH HOH . E 4 HOH A 70 470 70 HOH HOH . E 4 HOH A 71 471 71 HOH HOH . E 4 HOH A 72 472 72 HOH HOH . E 4 HOH A 73 473 73 HOH HOH . E 4 HOH A 74 474 74 HOH HOH . E 4 HOH A 75 475 75 HOH HOH . E 4 HOH A 76 476 76 HOH HOH . E 4 HOH A 77 477 77 HOH HOH . E 4 HOH A 78 478 78 HOH HOH . E 4 HOH A 79 479 79 HOH HOH . E 4 HOH A 80 480 80 HOH HOH . E 4 HOH A 81 481 81 HOH HOH . E 4 HOH A 82 482 82 HOH HOH . E 4 HOH A 83 483 83 HOH HOH . E 4 HOH A 84 484 84 HOH HOH . E 4 HOH A 85 485 85 HOH HOH . E 4 HOH A 86 486 86 HOH HOH . E 4 HOH A 87 487 87 HOH HOH . E 4 HOH A 88 488 88 HOH HOH . E 4 HOH A 89 489 89 HOH HOH . E 4 HOH A 90 490 90 HOH HOH . E 4 HOH A 91 491 91 HOH HOH . E 4 HOH A 92 492 92 HOH HOH . E 4 HOH A 93 493 93 HOH HOH . E 4 HOH A 94 494 94 HOH HOH . E 4 HOH A 95 495 95 HOH HOH . E 4 HOH A 96 496 96 HOH HOH . E 4 HOH A 97 497 97 HOH HOH . E 4 HOH A 98 498 98 HOH HOH . E 4 HOH A 99 499 99 HOH HOH . E 4 HOH A 100 500 100 HOH HOH . E 4 HOH A 101 501 101 HOH HOH . E 4 HOH A 102 502 102 HOH HOH . E 4 HOH A 103 503 103 HOH HOH . E 4 HOH A 104 504 104 HOH HOH . E 4 HOH A 105 505 105 HOH HOH . E 4 HOH A 106 506 106 HOH HOH . E 4 HOH A 107 507 107 HOH HOH . E 4 HOH A 108 508 108 HOH HOH . E 4 HOH A 109 509 109 HOH HOH . E 4 HOH A 110 510 110 HOH HOH . E 4 HOH A 111 511 111 HOH HOH . E 4 HOH A 112 512 112 HOH HOH . E 4 HOH A 113 513 113 HOH HOH . E 4 HOH A 114 514 114 HOH HOH . E 4 HOH A 115 515 115 HOH HOH . E 4 HOH A 116 516 116 HOH HOH . E 4 HOH A 117 517 117 HOH HOH . E 4 HOH A 118 518 118 HOH HOH . E 4 HOH A 119 519 119 HOH HOH . E 4 HOH A 120 520 120 HOH HOH . E 4 HOH A 121 521 121 HOH HOH . E 4 HOH A 122 522 122 HOH HOH . E 4 HOH A 123 523 123 HOH HOH . E 4 HOH A 124 524 124 HOH HOH . E 4 HOH A 125 525 125 HOH HOH . E 4 HOH A 126 526 126 HOH HOH . E 4 HOH A 127 527 127 HOH HOH . E 4 HOH A 128 528 128 HOH HOH . E 4 HOH A 129 529 129 HOH HOH . E 4 HOH A 130 530 130 HOH HOH . E 4 HOH A 131 531 131 HOH HOH . E 4 HOH A 132 532 132 HOH HOH . E 4 HOH A 133 533 133 HOH HOH . E 4 HOH A 134 534 134 HOH HOH . E 4 HOH A 135 535 135 HOH HOH . E 4 HOH A 136 536 136 HOH HOH . E 4 HOH A 137 537 137 HOH HOH . E 4 HOH A 138 538 138 HOH HOH . E 4 HOH A 139 539 139 HOH HOH . E 4 HOH A 140 540 140 HOH HOH . E 4 HOH A 141 541 141 HOH HOH . E 4 HOH A 142 542 142 HOH HOH . E 4 HOH A 143 543 143 HOH HOH . E 4 HOH A 144 544 144 HOH HOH . E 4 HOH A 145 545 145 HOH HOH . E 4 HOH A 146 546 146 HOH HOH . E 4 HOH A 147 547 147 HOH HOH . E 4 HOH A 148 548 148 HOH HOH . E 4 HOH A 149 549 149 HOH HOH . E 4 HOH A 150 550 150 HOH HOH . E 4 HOH A 151 551 151 HOH HOH . E 4 HOH A 152 552 152 HOH HOH . E 4 HOH A 153 553 153 HOH HOH . E 4 HOH A 154 554 154 HOH HOH . E 4 HOH A 155 555 155 HOH HOH . E 4 HOH A 156 556 156 HOH HOH . E 4 HOH A 157 557 157 HOH HOH . E 4 HOH A 158 558 158 HOH HOH . E 4 HOH A 159 559 159 HOH HOH . E 4 HOH A 160 560 160 HOH HOH . E 4 HOH A 161 561 161 HOH HOH . E 4 HOH A 162 562 162 HOH HOH . E 4 HOH A 163 563 163 HOH HOH . E 4 HOH A 164 564 164 HOH HOH . E 4 HOH A 165 565 165 HOH HOH . E 4 HOH A 166 566 166 HOH HOH . E 4 HOH A 167 567 167 HOH HOH . E 4 HOH A 168 568 168 HOH HOH . E 4 HOH A 169 569 169 HOH HOH . E 4 HOH A 170 570 170 HOH HOH . E 4 HOH A 171 571 171 HOH HOH . E 4 HOH A 172 572 172 HOH HOH . E 4 HOH A 173 573 173 HOH HOH . E 4 HOH A 174 574 174 HOH HOH . E 4 HOH A 175 575 175 HOH HOH . E 4 HOH A 176 576 176 HOH HOH . E 4 HOH A 177 577 177 HOH HOH . E 4 HOH A 178 578 178 HOH HOH . E 4 HOH A 179 579 179 HOH HOH . E 4 HOH A 180 580 180 HOH HOH . E 4 HOH A 181 581 181 HOH HOH . E 4 HOH A 182 582 182 HOH HOH . E 4 HOH A 183 583 183 HOH HOH . E 4 HOH A 184 584 184 HOH HOH . E 4 HOH A 185 585 185 HOH HOH . E 4 HOH A 186 586 186 HOH HOH . E 4 HOH A 187 587 187 HOH HOH . E 4 HOH A 188 588 188 HOH HOH . E 4 HOH A 189 589 189 HOH HOH . E 4 HOH A 190 590 190 HOH HOH . E 4 HOH A 191 591 191 HOH HOH . E 4 HOH A 192 592 192 HOH HOH . E 4 HOH A 193 593 193 HOH HOH . E 4 HOH A 194 594 194 HOH HOH . E 4 HOH A 195 595 195 HOH HOH . E 4 HOH A 196 596 196 HOH HOH . E 4 HOH A 197 597 197 HOH HOH . E 4 HOH A 198 598 198 HOH HOH . E 4 HOH A 199 599 199 HOH HOH . E 4 HOH A 200 600 200 HOH HOH . E 4 HOH A 201 601 201 HOH HOH . E 4 HOH A 202 602 202 HOH HOH . E 4 HOH A 203 603 203 HOH HOH . E 4 HOH A 204 604 204 HOH HOH . E 4 HOH A 205 605 205 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 13.555 15.388 78.237 0.5 29.76 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . B 2 13.638 16.693 77.676 0.5 32.92 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . B 2 14.779 14.683 77.756 0.5 30.91 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . B 2 14.335 14.069 76.565 0.5 30.1 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . B 2 15.161 13.626 78.753 0.5 29.93 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . B 2 15.92 12.618 78.085 0.5 33 ? O3 GOL 301 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #