data_4GAP
#
_model_server_result.job_id            P0vk9CFHrbXSKmP9289BPw 
_model_server_result.datetime_utc      '2024-11-28 07:16:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4gap 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    4GAP 
#
_exptl.entry_id    4GAP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4GAP 
_cell.length_a            116.013 
_cell.length_b            164.478 
_cell.length_c            70.192 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4GAP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 70 n n 
PA O2A FAD sing 71 n n 
PA O5B FAD sing 72 n n 
PA O3P FAD sing 73 n n 
O2A HOA2 FAD sing 74 n n 
O5B C5B FAD sing 75 n n 
C5B C4B FAD sing 76 n n 
C5B H51A FAD sing 77 n n 
C5B H52A FAD sing 78 n n 
C4B O4B FAD sing 79 n n 
C4B C3B FAD sing 80 n n 
C4B H4B FAD sing 81 n n 
O4B C1B FAD sing 82 n n 
C3B O3B FAD sing 83 n n 
C3B C2B FAD sing 84 n n 
C3B H3B FAD sing 85 n n 
O3B HO3A FAD sing 86 n n 
C2B O2B FAD sing 87 n n 
C2B C1B FAD sing 88 n n 
C2B H2B FAD sing 89 n n 
O2B HO2A FAD sing 90 n n 
C1B N9A FAD sing 91 n n 
C1B H1B FAD sing 92 n n 
N9A C8A FAD sing 93 n y 
N9A C4A FAD sing 94 n y 
C8A N7A FAD doub 95 n y 
C8A H8A FAD sing 96 n n 
N7A C5A FAD sing 97 n y 
C5A C6A FAD sing 98 n y 
C5A C4A FAD doub 99 n y 
C6A N6A FAD sing 100 n n 
C6A N1A FAD doub 101 n y 
N6A H61A FAD sing 102 n n 
N6A H62A FAD sing 103 n n 
N1A C2A FAD sing 104 n y 
C2A N3A FAD doub 105 n y 
C2A H2A FAD sing 106 n n 
N3A C4A FAD sing 107 n y 
N1 C2 FAD sing 108 n n 
N1 C10 FAD doub 109 n n 
C2 O2 FAD doub 110 n n 
C2 N3 FAD sing 111 n n 
N3 C4 FAD sing 112 n n 
N3 HN3 FAD sing 113 n n 
C4 O4 FAD doub 114 n n 
C4 C4X FAD sing 115 n n 
C4X N5 FAD doub 116 n n 
C4X C10 FAD sing 117 n n 
N5 C5X FAD sing 118 n n 
C5X C6 FAD doub 119 n y 
C5X C9A FAD sing 120 n y 
C6 C7 FAD sing 121 n y 
C6 H6 FAD sing 122 n n 
C7 C7M FAD sing 123 n n 
C7 C8 FAD doub 124 n y 
C7M HM71 FAD sing 125 n n 
C7M HM72 FAD sing 126 n n 
C7M HM73 FAD sing 127 n n 
C8 C8M FAD sing 128 n n 
C8 C9 FAD sing 129 n y 
C8M HM81 FAD sing 130 n n 
C8M HM82 FAD sing 131 n n 
C8M HM83 FAD sing 132 n n 
C9 C9A FAD doub 133 n y 
C9 H9 FAD sing 134 n n 
C9A N10 FAD sing 135 n n 
N10 C10 FAD sing 136 n n 
N10 C1' FAD sing 137 n n 
C1' C2' FAD sing 138 n n 
C1' "H1'1" FAD sing 139 n n 
C1' "H1'2" FAD sing 140 n n 
C2' O2' FAD sing 141 n n 
C2' C3' FAD sing 142 n n 
C2' H2' FAD sing 143 n n 
O2' HO2' FAD sing 144 n n 
C3' O3' FAD sing 145 n n 
C3' C4' FAD sing 146 n n 
C3' H3' FAD sing 147 n n 
O3' HO3' FAD sing 148 n n 
C4' O4' FAD sing 149 n n 
C4' C5' FAD sing 150 n n 
C4' H4' FAD sing 151 n n 
O4' HO4' FAD sing 152 n n 
C5' O5' FAD sing 153 n n 
C5' "H5'1" FAD sing 154 n n 
C5' "H5'2" FAD sing 155 n n 
O5' P FAD sing 156 n n 
P O1P FAD doub 157 n n 
P O2P FAD sing 158 n n 
P O3P FAD sing 159 n n 
O2P HOP2 FAD sing 160 n n 
#
_atom_sites.entry_id                     4GAP 
_atom_sites.fract_transf_matrix[1][1]    0.00862 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00608 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014247 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 601 601 FAD FAD . 
D 3 NAD A 1 602 602 NAD NAD . 
E 2 FAD B 1 601 601 FAD FAD . 
F 3 NAD B 1 602 602 NAD NAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . C 2 16.774 -18.195 -19.169 1 37.95 ? PA FAD 601 A 1 
HETATM 2 O O1A FAD . . . C 2 16.819 -18.339 -17.659 1 36.76 ? O1A FAD 601 A 1 
HETATM 3 O O2A FAD . . . C 2 17.744 -18.938 -20.051 1 37.42 ? O2A FAD 601 A 1 
HETATM 4 O O5B FAD . . . C 2 15.335 -18.655 -19.666 1 35.32 ? O5B FAD 601 A 1 
HETATM 5 C C5B FAD . . . C 2 14.968 -18.335 -20.989 1 35.44 ? C5B FAD 601 A 1 
HETATM 6 C C4B FAD . . . C 2 13.763 -19.184 -21.332 1 35.53 ? C4B FAD 601 A 1 
HETATM 7 O O4B FAD . . . C 2 13.307 -18.919 -22.655 1 34.54 ? O4B FAD 601 A 1 
HETATM 8 C C3B FAD . . . C 2 14.103 -20.658 -21.267 1 35.82 ? C3B FAD 601 A 1 
HETATM 9 O O3B FAD . . . C 2 13.144 -21.283 -20.41 1 35.47 ? O3B FAD 601 A 1 
HETATM 10 C C2B FAD . . . C 2 14.018 -21.134 -22.705 1 36.31 ? C2B FAD 601 A 1 
HETATM 11 O O2B FAD . . . C 2 13.605 -22.508 -22.768 1 36.82 ? O2B FAD 601 A 1 
HETATM 12 C C1B FAD . . . C 2 13.011 -20.15 -23.29 1 36.55 ? C1B FAD 601 A 1 
HETATM 13 N N9A FAD . . . C 2 13.037 -19.886 -24.75 1 38.13 ? N9A FAD 601 A 1 
HETATM 14 C C8A FAD . . . C 2 14.092 -19.88 -25.59 1 38.71 ? C8A FAD 601 A 1 
HETATM 15 N N7A FAD . . . C 2 13.693 -19.561 -26.854 1 38.83 ? N7A FAD 601 A 1 
HETATM 16 C C5A FAD . . . C 2 12.368 -19.349 -26.818 1 39.01 ? C5A FAD 601 A 1 
HETATM 17 C C6A FAD . . . C 2 11.313 -18.987 -27.784 1 40.1 ? C6A FAD 601 A 1 
HETATM 18 N N6A FAD . . . C 2 11.615 -18.779 -29.082 1 41.8 ? N6A FAD 601 A 1 
HETATM 19 N N1A FAD . . . C 2 10.042 -18.871 -27.336 1 41.04 ? N1A FAD 601 A 1 
HETATM 20 C C2A FAD . . . C 2 9.719 -19.064 -26.041 1 39.94 ? C2A FAD 601 A 1 
HETATM 21 N N3A FAD . . . C 2 10.634 -19.394 -25.111 1 38.7 ? N3A FAD 601 A 1 
HETATM 22 C C4A FAD . . . C 2 11.941 -19.554 -25.432 1 38.69 ? C4A FAD 601 A 1 
HETATM 23 N N1 FAD . . . C 2 23.774 -16.591 -13.028 1 54.77 ? N1 FAD 601 A 1 
HETATM 24 C C2 FAD . . . C 2 24.009 -16.335 -11.708 1 56.98 ? C2 FAD 601 A 1 
HETATM 25 O O2 FAD . . . C 2 23.627 -15.243 -11.226 1 59.08 ? O2 FAD 601 A 1 
HETATM 26 N N3 FAD . . . C 2 24.648 -17.204 -10.89 1 55.74 ? N3 FAD 601 A 1 
HETATM 27 C C4 FAD . . . C 2 25.095 -18.392 -11.326 1 55.7 ? C4 FAD 601 A 1 
HETATM 28 O O4 FAD . . . C 2 25.684 -19.175 -10.543 1 57.08 ? O4 FAD 601 A 1 
HETATM 29 C C4X FAD . . . C 2 24.877 -18.749 -12.756 1 54.48 ? C4X FAD 601 A 1 
HETATM 30 N N5 FAD . . . C 2 25.296 -19.927 -13.265 1 53.82 ? N5 FAD 601 A 1 
HETATM 31 C C5X FAD . . . C 2 25.081 -20.24 -14.558 1 53.13 ? C5X FAD 601 A 1 
HETATM 32 C C6 FAD . . . C 2 25.532 -21.468 -15.026 1 53.09 ? C6 FAD 601 A 1 
HETATM 33 C C7 FAD . . . C 2 25.333 -21.827 -16.358 1 54.41 ? C7 FAD 601 A 1 
HETATM 34 C C7M FAD . . . C 2 25.817 -23.158 -16.881 1 54.81 ? C7M FAD 601 A 1 
HETATM 35 C C8 FAD . . . C 2 24.635 -20.89 -17.275 1 54.13 ? C8 FAD 601 A 1 
HETATM 36 C C8M FAD . . . C 2 24.424 -21.278 -18.716 1 55.36 ? C8M FAD 601 A 1 
HETATM 37 C C9 FAD . . . C 2 24.183 -19.657 -16.809 1 53.49 ? C9 FAD 601 A 1 
HETATM 38 C C9A FAD . . . C 2 24.378 -19.285 -15.475 1 53.12 ? C9A FAD 601 A 1 
HETATM 39 N N10 FAD . . . C 2 23.924 -18.04 -14.961 1 52.39 ? N10 FAD 601 A 1 
HETATM 40 C C10 FAD . . . C 2 24.17 -17.754 -13.601 1 53.21 ? C10 FAD 601 A 1 
HETATM 41 C C1' FAD . . . C 2 23.238 -17.031 -15.797 1 50.3 ? C1' FAD 601 A 1 
HETATM 42 C C2' FAD . . . C 2 21.722 -17.165 -15.761 1 47.41 ? C2' FAD 601 A 1 
HETATM 43 O O2' FAD . . . C 2 21.361 -18.534 -15.958 1 47.09 ? O2' FAD 601 A 1 
HETATM 44 C C3' FAD . . . C 2 21.068 -16.288 -16.832 1 44.61 ? C3' FAD 601 A 1 
HETATM 45 O O3' FAD . . . C 2 21.414 -14.912 -16.632 1 41.86 ? O3' FAD 601 A 1 
HETATM 46 C C4' FAD . . . C 2 19.555 -16.466 -16.79 1 43.62 ? C4' FAD 601 A 1 
HETATM 47 O O4' FAD . . . C 2 19.245 -17.742 -17.353 1 45.42 ? O4' FAD 601 A 1 
HETATM 48 C C5' FAD . . . C 2 18.775 -15.413 -17.567 1 42.67 ? C5' FAD 601 A 1 
HETATM 49 O O5' FAD . . . C 2 17.379 -15.598 -17.329 1 40.1 ? O5' FAD 601 A 1 
HETATM 50 P P FAD . . . C 2 16.341 -15.445 -18.541 1 40.27 ? P FAD 601 A 1 
HETATM 51 O O1P FAD . . . C 2 14.953 -15.726 -17.993 1 40.93 ? O1P FAD 601 A 1 
HETATM 52 O O2P FAD . . . C 2 16.619 -14.143 -19.26 1 38.73 ? O2P FAD 601 A 1 
HETATM 53 O O3P FAD . . . C 2 16.781 -16.628 -19.564 1 38.33 ? O3P FAD 601 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           53 
#