data_4GAP # _model_server_result.job_id qdWyrf0FFOessZwBjJ5eUQ _model_server_result.datetime_utc '2024-11-12 20:50:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gap # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 4GAP # _exptl.entry_id 4GAP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GAP _cell.length_a 116.013 _cell.length_b 164.478 _cell.length_c 70.192 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GAP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 70 n n PA O2A FAD sing 71 n n PA O5B FAD sing 72 n n PA O3P FAD sing 73 n n O2A HOA2 FAD sing 74 n n O5B C5B FAD sing 75 n n C5B C4B FAD sing 76 n n C5B H51A FAD sing 77 n n C5B H52A FAD sing 78 n n C4B O4B FAD sing 79 n n C4B C3B FAD sing 80 n n C4B H4B FAD sing 81 n n O4B C1B FAD sing 82 n n C3B O3B FAD sing 83 n n C3B C2B FAD sing 84 n n C3B H3B FAD sing 85 n n O3B HO3A FAD sing 86 n n C2B O2B FAD sing 87 n n C2B C1B FAD sing 88 n n C2B H2B FAD sing 89 n n O2B HO2A FAD sing 90 n n C1B N9A FAD sing 91 n n C1B H1B FAD sing 92 n n N9A C8A FAD sing 93 n y N9A C4A FAD sing 94 n y C8A N7A FAD doub 95 n y C8A H8A FAD sing 96 n n N7A C5A FAD sing 97 n y C5A C6A FAD sing 98 n y C5A C4A FAD doub 99 n y C6A N6A FAD sing 100 n n C6A N1A FAD doub 101 n y N6A H61A FAD sing 102 n n N6A H62A FAD sing 103 n n N1A C2A FAD sing 104 n y C2A N3A FAD doub 105 n y C2A H2A FAD sing 106 n n N3A C4A FAD sing 107 n y N1 C2 FAD sing 108 n n N1 C10 FAD doub 109 n n C2 O2 FAD doub 110 n n C2 N3 FAD sing 111 n n N3 C4 FAD sing 112 n n N3 HN3 FAD sing 113 n n C4 O4 FAD doub 114 n n C4 C4X FAD sing 115 n n C4X N5 FAD doub 116 n n C4X C10 FAD sing 117 n n N5 C5X FAD sing 118 n n C5X C6 FAD doub 119 n y C5X C9A FAD sing 120 n y C6 C7 FAD sing 121 n y C6 H6 FAD sing 122 n n C7 C7M FAD sing 123 n n C7 C8 FAD doub 124 n y C7M HM71 FAD sing 125 n n C7M HM72 FAD sing 126 n n C7M HM73 FAD sing 127 n n C8 C8M FAD sing 128 n n C8 C9 FAD sing 129 n y C8M HM81 FAD sing 130 n n C8M HM82 FAD sing 131 n n C8M HM83 FAD sing 132 n n C9 C9A FAD doub 133 n y C9 H9 FAD sing 134 n n C9A N10 FAD sing 135 n n N10 C10 FAD sing 136 n n N10 C1' FAD sing 137 n n C1' C2' FAD sing 138 n n C1' "H1'1" FAD sing 139 n n C1' "H1'2" FAD sing 140 n n C2' O2' FAD sing 141 n n C2' C3' FAD sing 142 n n C2' H2' FAD sing 143 n n O2' HO2' FAD sing 144 n n C3' O3' FAD sing 145 n n C3' C4' FAD sing 146 n n C3' H3' FAD sing 147 n n O3' HO3' FAD sing 148 n n C4' O4' FAD sing 149 n n C4' C5' FAD sing 150 n n C4' H4' FAD sing 151 n n O4' HO4' FAD sing 152 n n C5' O5' FAD sing 153 n n C5' "H5'1" FAD sing 154 n n C5' "H5'2" FAD sing 155 n n O5' P FAD sing 156 n n P O1P FAD doub 157 n n P O2P FAD sing 158 n n P O3P FAD sing 159 n n O2P HOP2 FAD sing 160 n n # _atom_sites.entry_id 4GAP _atom_sites.fract_transf_matrix[1][1] 0.00862 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00608 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014247 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 601 601 FAD FAD . D 3 NAD A 1 602 602 NAD NAD . E 2 FAD B 1 601 601 FAD FAD . F 3 NAD B 1 602 602 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . C 2 16.774 -18.195 -19.169 1 37.95 ? PA FAD 601 A 1 HETATM 2 O O1A FAD . . . C 2 16.819 -18.339 -17.659 1 36.76 ? O1A FAD 601 A 1 HETATM 3 O O2A FAD . . . C 2 17.744 -18.938 -20.051 1 37.42 ? O2A FAD 601 A 1 HETATM 4 O O5B FAD . . . C 2 15.335 -18.655 -19.666 1 35.32 ? O5B FAD 601 A 1 HETATM 5 C C5B FAD . . . C 2 14.968 -18.335 -20.989 1 35.44 ? C5B FAD 601 A 1 HETATM 6 C C4B FAD . . . C 2 13.763 -19.184 -21.332 1 35.53 ? C4B FAD 601 A 1 HETATM 7 O O4B FAD . . . C 2 13.307 -18.919 -22.655 1 34.54 ? O4B FAD 601 A 1 HETATM 8 C C3B FAD . . . C 2 14.103 -20.658 -21.267 1 35.82 ? C3B FAD 601 A 1 HETATM 9 O O3B FAD . . . C 2 13.144 -21.283 -20.41 1 35.47 ? O3B FAD 601 A 1 HETATM 10 C C2B FAD . . . C 2 14.018 -21.134 -22.705 1 36.31 ? C2B FAD 601 A 1 HETATM 11 O O2B FAD . . . C 2 13.605 -22.508 -22.768 1 36.82 ? O2B FAD 601 A 1 HETATM 12 C C1B FAD . . . C 2 13.011 -20.15 -23.29 1 36.55 ? C1B FAD 601 A 1 HETATM 13 N N9A FAD . . . C 2 13.037 -19.886 -24.75 1 38.13 ? N9A FAD 601 A 1 HETATM 14 C C8A FAD . . . C 2 14.092 -19.88 -25.59 1 38.71 ? C8A FAD 601 A 1 HETATM 15 N N7A FAD . . . C 2 13.693 -19.561 -26.854 1 38.83 ? N7A FAD 601 A 1 HETATM 16 C C5A FAD . . . C 2 12.368 -19.349 -26.818 1 39.01 ? C5A FAD 601 A 1 HETATM 17 C C6A FAD . . . C 2 11.313 -18.987 -27.784 1 40.1 ? C6A FAD 601 A 1 HETATM 18 N N6A FAD . . . C 2 11.615 -18.779 -29.082 1 41.8 ? N6A FAD 601 A 1 HETATM 19 N N1A FAD . . . C 2 10.042 -18.871 -27.336 1 41.04 ? N1A FAD 601 A 1 HETATM 20 C C2A FAD . . . C 2 9.719 -19.064 -26.041 1 39.94 ? C2A FAD 601 A 1 HETATM 21 N N3A FAD . . . C 2 10.634 -19.394 -25.111 1 38.7 ? N3A FAD 601 A 1 HETATM 22 C C4A FAD . . . C 2 11.941 -19.554 -25.432 1 38.69 ? C4A FAD 601 A 1 HETATM 23 N N1 FAD . . . C 2 23.774 -16.591 -13.028 1 54.77 ? N1 FAD 601 A 1 HETATM 24 C C2 FAD . . . C 2 24.009 -16.335 -11.708 1 56.98 ? C2 FAD 601 A 1 HETATM 25 O O2 FAD . . . C 2 23.627 -15.243 -11.226 1 59.08 ? O2 FAD 601 A 1 HETATM 26 N N3 FAD . . . C 2 24.648 -17.204 -10.89 1 55.74 ? N3 FAD 601 A 1 HETATM 27 C C4 FAD . . . C 2 25.095 -18.392 -11.326 1 55.7 ? C4 FAD 601 A 1 HETATM 28 O O4 FAD . . . C 2 25.684 -19.175 -10.543 1 57.08 ? O4 FAD 601 A 1 HETATM 29 C C4X FAD . . . C 2 24.877 -18.749 -12.756 1 54.48 ? C4X FAD 601 A 1 HETATM 30 N N5 FAD . . . C 2 25.296 -19.927 -13.265 1 53.82 ? N5 FAD 601 A 1 HETATM 31 C C5X FAD . . . C 2 25.081 -20.24 -14.558 1 53.13 ? C5X FAD 601 A 1 HETATM 32 C C6 FAD . . . C 2 25.532 -21.468 -15.026 1 53.09 ? C6 FAD 601 A 1 HETATM 33 C C7 FAD . . . C 2 25.333 -21.827 -16.358 1 54.41 ? C7 FAD 601 A 1 HETATM 34 C C7M FAD . . . C 2 25.817 -23.158 -16.881 1 54.81 ? C7M FAD 601 A 1 HETATM 35 C C8 FAD . . . C 2 24.635 -20.89 -17.275 1 54.13 ? C8 FAD 601 A 1 HETATM 36 C C8M FAD . . . C 2 24.424 -21.278 -18.716 1 55.36 ? C8M FAD 601 A 1 HETATM 37 C C9 FAD . . . C 2 24.183 -19.657 -16.809 1 53.49 ? C9 FAD 601 A 1 HETATM 38 C C9A FAD . . . C 2 24.378 -19.285 -15.475 1 53.12 ? C9A FAD 601 A 1 HETATM 39 N N10 FAD . . . C 2 23.924 -18.04 -14.961 1 52.39 ? N10 FAD 601 A 1 HETATM 40 C C10 FAD . . . C 2 24.17 -17.754 -13.601 1 53.21 ? C10 FAD 601 A 1 HETATM 41 C C1' FAD . . . C 2 23.238 -17.031 -15.797 1 50.3 ? C1' FAD 601 A 1 HETATM 42 C C2' FAD . . . C 2 21.722 -17.165 -15.761 1 47.41 ? C2' FAD 601 A 1 HETATM 43 O O2' FAD . . . C 2 21.361 -18.534 -15.958 1 47.09 ? O2' FAD 601 A 1 HETATM 44 C C3' FAD . . . C 2 21.068 -16.288 -16.832 1 44.61 ? C3' FAD 601 A 1 HETATM 45 O O3' FAD . . . C 2 21.414 -14.912 -16.632 1 41.86 ? O3' FAD 601 A 1 HETATM 46 C C4' FAD . . . C 2 19.555 -16.466 -16.79 1 43.62 ? C4' FAD 601 A 1 HETATM 47 O O4' FAD . . . C 2 19.245 -17.742 -17.353 1 45.42 ? O4' FAD 601 A 1 HETATM 48 C C5' FAD . . . C 2 18.775 -15.413 -17.567 1 42.67 ? C5' FAD 601 A 1 HETATM 49 O O5' FAD . . . C 2 17.379 -15.598 -17.329 1 40.1 ? O5' FAD 601 A 1 HETATM 50 P P FAD . . . C 2 16.341 -15.445 -18.541 1 40.27 ? P FAD 601 A 1 HETATM 51 O O1P FAD . . . C 2 14.953 -15.726 -17.993 1 40.93 ? O1P FAD 601 A 1 HETATM 52 O O2P FAD . . . C 2 16.619 -14.143 -19.26 1 38.73 ? O2P FAD 601 A 1 HETATM 53 O O3P FAD . . . C 2 16.781 -16.628 -19.564 1 38.33 ? O3P FAD 601 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 214 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 53 #