data_4GAP
#
_model_server_result.job_id            e8LhWRMQKUyOIlwkZp156Q 
_model_server_result.datetime_utc      '2024-11-24 14:00:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4gap 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":601}' 
#
_entry.id    4GAP 
#
_exptl.entry_id    4GAP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4GAP 
_cell.length_a            116.013 
_cell.length_b            164.478 
_cell.length_c            70.192 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4GAP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 70 n n 
PA O2A FAD sing 71 n n 
PA O5B FAD sing 72 n n 
PA O3P FAD sing 73 n n 
O2A HOA2 FAD sing 74 n n 
O5B C5B FAD sing 75 n n 
C5B C4B FAD sing 76 n n 
C5B H51A FAD sing 77 n n 
C5B H52A FAD sing 78 n n 
C4B O4B FAD sing 79 n n 
C4B C3B FAD sing 80 n n 
C4B H4B FAD sing 81 n n 
O4B C1B FAD sing 82 n n 
C3B O3B FAD sing 83 n n 
C3B C2B FAD sing 84 n n 
C3B H3B FAD sing 85 n n 
O3B HO3A FAD sing 86 n n 
C2B O2B FAD sing 87 n n 
C2B C1B FAD sing 88 n n 
C2B H2B FAD sing 89 n n 
O2B HO2A FAD sing 90 n n 
C1B N9A FAD sing 91 n n 
C1B H1B FAD sing 92 n n 
N9A C8A FAD sing 93 n y 
N9A C4A FAD sing 94 n y 
C8A N7A FAD doub 95 n y 
C8A H8A FAD sing 96 n n 
N7A C5A FAD sing 97 n y 
C5A C6A FAD sing 98 n y 
C5A C4A FAD doub 99 n y 
C6A N6A FAD sing 100 n n 
C6A N1A FAD doub 101 n y 
N6A H61A FAD sing 102 n n 
N6A H62A FAD sing 103 n n 
N1A C2A FAD sing 104 n y 
C2A N3A FAD doub 105 n y 
C2A H2A FAD sing 106 n n 
N3A C4A FAD sing 107 n y 
N1 C2 FAD sing 108 n n 
N1 C10 FAD doub 109 n n 
C2 O2 FAD doub 110 n n 
C2 N3 FAD sing 111 n n 
N3 C4 FAD sing 112 n n 
N3 HN3 FAD sing 113 n n 
C4 O4 FAD doub 114 n n 
C4 C4X FAD sing 115 n n 
C4X N5 FAD doub 116 n n 
C4X C10 FAD sing 117 n n 
N5 C5X FAD sing 118 n n 
C5X C6 FAD doub 119 n y 
C5X C9A FAD sing 120 n y 
C6 C7 FAD sing 121 n y 
C6 H6 FAD sing 122 n n 
C7 C7M FAD sing 123 n n 
C7 C8 FAD doub 124 n y 
C7M HM71 FAD sing 125 n n 
C7M HM72 FAD sing 126 n n 
C7M HM73 FAD sing 127 n n 
C8 C8M FAD sing 128 n n 
C8 C9 FAD sing 129 n y 
C8M HM81 FAD sing 130 n n 
C8M HM82 FAD sing 131 n n 
C8M HM83 FAD sing 132 n n 
C9 C9A FAD doub 133 n y 
C9 H9 FAD sing 134 n n 
C9A N10 FAD sing 135 n n 
N10 C10 FAD sing 136 n n 
N10 C1' FAD sing 137 n n 
C1' C2' FAD sing 138 n n 
C1' "H1'1" FAD sing 139 n n 
C1' "H1'2" FAD sing 140 n n 
C2' O2' FAD sing 141 n n 
C2' C3' FAD sing 142 n n 
C2' H2' FAD sing 143 n n 
O2' HO2' FAD sing 144 n n 
C3' O3' FAD sing 145 n n 
C3' C4' FAD sing 146 n n 
C3' H3' FAD sing 147 n n 
O3' HO3' FAD sing 148 n n 
C4' O4' FAD sing 149 n n 
C4' C5' FAD sing 150 n n 
C4' H4' FAD sing 151 n n 
O4' HO4' FAD sing 152 n n 
C5' O5' FAD sing 153 n n 
C5' "H5'1" FAD sing 154 n n 
C5' "H5'2" FAD sing 155 n n 
O5' P FAD sing 156 n n 
P O1P FAD doub 157 n n 
P O2P FAD sing 158 n n 
P O3P FAD sing 159 n n 
O2P HOP2 FAD sing 160 n n 
#
_atom_sites.entry_id                     4GAP 
_atom_sites.fract_transf_matrix[1][1]    0.00862 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00608 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014247 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 601 601 FAD FAD . 
D 3 NAD A 1 602 602 NAD NAD . 
E 2 FAD B 1 601 601 FAD FAD . 
F 3 NAD B 1 602 602 NAD NAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . E 2 18.622 -61.62 -15.944 1 32.17 ? PA FAD 601 B 1 
HETATM 2 O O1A FAD . . . E 2 18.558 -61.22 -14.485 1 31.61 ? O1A FAD 601 B 1 
HETATM 3 O O2A FAD . . . E 2 17.597 -61.122 -16.931 1 32.77 ? O2A FAD 601 B 1 
HETATM 4 O O5B FAD . . . E 2 20.043 -61.119 -16.47 1 32.28 ? O5B FAD 601 B 1 
HETATM 5 C C5B FAD . . . E 2 20.513 -61.56 -17.73 1 33.14 ? C5B FAD 601 B 1 
HETATM 6 C C4B FAD . . . E 2 21.814 -60.836 -18.023 1 33.59 ? C4B FAD 601 B 1 
HETATM 7 O O4B FAD . . . E 2 22.363 -61.327 -19.237 1 35.02 ? O4B FAD 601 B 1 
HETATM 8 C C3B FAD . . . E 2 21.646 -59.351 -18.237 1 34.26 ? C3B FAD 601 B 1 
HETATM 9 O O3B FAD . . . E 2 22.748 -58.715 -17.586 1 32.39 ? O3B FAD 601 B 1 
HETATM 10 C C2B FAD . . . E 2 21.673 -59.195 -19.749 1 35.66 ? C2B FAD 601 B 1 
HETATM 11 O O2B FAD . . . E 2 22.088 -57.898 -20.206 1 38.56 ? O2B FAD 601 B 1 
HETATM 12 C C1B FAD . . . E 2 22.689 -60.249 -20.09 1 35.66 ? C1B FAD 601 B 1 
HETATM 13 N N9A FAD . . . E 2 22.686 -60.75 -21.469 1 37.02 ? N9A FAD 601 B 1 
HETATM 14 C C8A FAD . . . E 2 21.663 -60.891 -22.322 1 37.52 ? C8A FAD 601 B 1 
HETATM 15 N N7A FAD . . . E 2 22.105 -61.416 -23.499 1 38.09 ? N7A FAD 601 B 1 
HETATM 16 C C5A FAD . . . E 2 23.425 -61.626 -23.388 1 38.98 ? C5A FAD 601 B 1 
HETATM 17 C C6A FAD . . . E 2 24.518 -62.155 -24.236 1 40.67 ? C6A FAD 601 B 1 
HETATM 18 N N6A FAD . . . E 2 24.279 -62.584 -25.493 1 42.11 ? N6A FAD 601 B 1 
HETATM 19 N N1A FAD . . . E 2 25.768 -62.202 -23.717 1 41.66 ? N1A FAD 601 B 1 
HETATM 20 C C2A FAD . . . E 2 26.037 -61.785 -22.458 1 41.05 ? C2A FAD 601 B 1 
HETATM 21 N N3A FAD . . . E 2 25.089 -61.293 -21.634 1 39.55 ? N3A FAD 601 B 1 
HETATM 22 C C4A FAD . . . E 2 23.798 -61.192 -22.039 1 38.82 ? C4A FAD 601 B 1 
HETATM 23 N N1 FAD . . . E 2 11.571 -62.271 -10.25 1 40.13 ? N1 FAD 601 B 1 
HETATM 24 C C2 FAD . . . E 2 11.245 -62.34 -8.932 1 39.99 ? C2 FAD 601 B 1 
HETATM 25 O O2 FAD . . . E 2 11.587 -63.342 -8.269 1 40.11 ? O2 FAD 601 B 1 
HETATM 26 N N3 FAD . . . E 2 10.558 -61.374 -8.299 1 40.79 ? N3 FAD 601 B 1 
HETATM 27 C C4 FAD . . . E 2 10.144 -60.27 -8.918 1 40.59 ? C4 FAD 601 B 1 
HETATM 28 O O4 FAD . . . E 2 9.517 -59.398 -8.282 1 42.27 ? O4 FAD 601 B 1 
HETATM 29 C C4X FAD . . . E 2 10.457 -60.107 -10.361 1 40.99 ? C4X FAD 601 B 1 
HETATM 30 N N5 FAD . . . E 2 10.078 -59.015 -11.065 1 41.04 ? N5 FAD 601 B 1 
HETATM 31 C C5X FAD . . . E 2 10.373 -58.875 -12.371 1 39.01 ? C5X FAD 601 B 1 
HETATM 32 C C6 FAD . . . E 2 9.951 -57.72 -13.028 1 38.73 ? C6 FAD 601 B 1 
HETATM 33 C C7 FAD . . . E 2 10.23 -57.543 -14.379 1 37.71 ? C7 FAD 601 B 1 
HETATM 34 C C7M FAD . . . E 2 9.776 -56.298 -15.087 1 36.87 ? C7M FAD 601 B 1 
HETATM 35 C C8 FAD . . . E 2 10.983 -58.592 -15.107 1 37.29 ? C8 FAD 601 B 1 
HETATM 36 C C8M FAD . . . E 2 11.288 -58.407 -16.57 1 39.49 ? C8M FAD 601 B 1 
HETATM 37 C C9 FAD . . . E 2 11.407 -59.748 -14.453 1 37.5 ? C9 FAD 601 B 1 
HETATM 38 C C9A FAD . . . E 2 11.135 -59.941 -13.094 1 38.1 ? C9A FAD 601 B 1 
HETATM 39 N N10 FAD . . . E 2 11.545 -61.099 -12.368 1 37.46 ? N10 FAD 601 B 1 
HETATM 40 C C10 FAD . . . E 2 11.215 -61.203 -11.004 1 39.68 ? C10 FAD 601 B 1 
HETATM 41 C C1' FAD . . . E 2 12.263 -62.223 -12.969 1 35.11 ? C1' FAD 601 B 1 
HETATM 42 C C2' FAD . . . E 2 13.743 -62.146 -12.707 1 32.94 ? C2' FAD 601 B 1 
HETATM 43 O O2' FAD . . . E 2 14.221 -60.831 -13.014 1 32.36 ? O2' FAD 601 B 1 
HETATM 44 C C3' FAD . . . E 2 14.425 -63.19 -13.576 1 31.51 ? C3' FAD 601 B 1 
HETATM 45 O O3' FAD . . . E 2 13.903 -64.503 -13.318 1 31.19 ? O3' FAD 601 B 1 
HETATM 46 C C4' FAD . . . E 2 15.911 -63.113 -13.297 1 31.1 ? C4' FAD 601 B 1 
HETATM 47 O O4' FAD . . . E 2 16.345 -61.842 -13.777 1 31.41 ? O4' FAD 601 B 1 
HETATM 48 C C5' FAD . . . E 2 16.716 -64.206 -13.978 1 31.1 ? C5' FAD 601 B 1 
HETATM 49 O O5' FAD . . . E 2 18.102 -63.945 -13.785 1 30.55 ? O5' FAD 601 B 1 
HETATM 50 P P FAD . . . E 2 19.092 -64.291 -14.993 1 31.71 ? P FAD 601 B 1 
HETATM 51 O O1P FAD . . . E 2 20.51 -64.007 -14.538 1 34.46 ? O1P FAD 601 B 1 
HETATM 52 O O2P FAD . . . E 2 18.749 -65.677 -15.48 1 30.94 ? O2P FAD 601 B 1 
HETATM 53 O O3P FAD . . . E 2 18.681 -63.226 -16.14 1 31.23 ? O3P FAD 601 B 1 
#
_model_server_stats.io_time_ms              41 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           406 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           53 
#