data_4GAP
#
_model_server_result.job_id            L8Xa5q4r8QlXCOAHiZo2fQ 
_model_server_result.datetime_utc      '2024-11-12 20:50:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4gap 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":602}' 
#
_entry.id    4GAP 
#
_exptl.entry_id    4GAP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4GAP 
_cell.length_a            116.013 
_cell.length_b            164.478 
_cell.length_c            70.192 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4GAP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 313 n n 
PA O2A NAD sing 314 n n 
PA O5B NAD sing 315 n n 
PA O3 NAD sing 316 n n 
O2A HOA2 NAD sing 317 n n 
O5B C5B NAD sing 318 n n 
C5B C4B NAD sing 319 n n 
C5B H51A NAD sing 320 n n 
C5B H52A NAD sing 321 n n 
C4B O4B NAD sing 322 n n 
C4B C3B NAD sing 323 n n 
C4B H4B NAD sing 324 n n 
O4B C1B NAD sing 325 n n 
C3B O3B NAD sing 326 n n 
C3B C2B NAD sing 327 n n 
C3B H3B NAD sing 328 n n 
O3B HO3A NAD sing 329 n n 
C2B O2B NAD sing 330 n n 
C2B C1B NAD sing 331 n n 
C2B H2B NAD sing 332 n n 
O2B HO2A NAD sing 333 n n 
C1B N9A NAD sing 334 n n 
C1B H1B NAD sing 335 n n 
N9A C8A NAD sing 336 n y 
N9A C4A NAD sing 337 n y 
C8A N7A NAD doub 338 n y 
C8A H8A NAD sing 339 n n 
N7A C5A NAD sing 340 n y 
C5A C6A NAD sing 341 n y 
C5A C4A NAD doub 342 n y 
C6A N6A NAD sing 343 n n 
C6A N1A NAD doub 344 n y 
N6A H61A NAD sing 345 n n 
N6A H62A NAD sing 346 n n 
N1A C2A NAD sing 347 n y 
C2A N3A NAD doub 348 n y 
C2A H2A NAD sing 349 n n 
N3A C4A NAD sing 350 n y 
O3 PN NAD sing 351 n n 
PN O1N NAD doub 352 n n 
PN O2N NAD sing 353 n n 
PN O5D NAD sing 354 n n 
O5D C5D NAD sing 355 n n 
C5D C4D NAD sing 356 n n 
C5D H51N NAD sing 357 n n 
C5D H52N NAD sing 358 n n 
C4D O4D NAD sing 359 n n 
C4D C3D NAD sing 360 n n 
C4D H4D NAD sing 361 n n 
O4D C1D NAD sing 362 n n 
C3D O3D NAD sing 363 n n 
C3D C2D NAD sing 364 n n 
C3D H3D NAD sing 365 n n 
O3D HO3N NAD sing 366 n n 
C2D O2D NAD sing 367 n n 
C2D C1D NAD sing 368 n n 
C2D H2D NAD sing 369 n n 
O2D HO2N NAD sing 370 n n 
C1D N1N NAD sing 371 n n 
C1D H1D NAD sing 372 n n 
N1N C2N NAD sing 373 n y 
N1N C6N NAD doub 374 n y 
C2N C3N NAD doub 375 n y 
C2N H2N NAD sing 376 n n 
C3N C7N NAD sing 377 n n 
C3N C4N NAD sing 378 n y 
C7N O7N NAD doub 379 n n 
C7N N7N NAD sing 380 n n 
N7N H71N NAD sing 381 n n 
N7N H72N NAD sing 382 n n 
C4N C5N NAD doub 383 n y 
C4N H4N NAD sing 384 n n 
C5N C6N NAD sing 385 n y 
C5N H5N NAD sing 386 n n 
C6N H6N NAD sing 387 n n 
#
_atom_sites.entry_id                     4GAP 
_atom_sites.fract_transf_matrix[1][1]    0.00862 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00608 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014247 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 601 601 FAD FAD . 
D 3 NAD A 1 602 602 NAD NAD . 
E 2 FAD B 1 601 601 FAD FAD . 
F 3 NAD B 1 602 602 NAD NAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . D 3 31.07 -14.949 -19.664 0.5 44.81 ? PA NAD 602 A 1 
HETATM 2 O O1A NAD . . . D 3 30.354 -15.644 -20.789 0.5 43.06 ? O1A NAD 602 A 1 
HETATM 3 O O2A NAD . . . D 3 30.661 -13.551 -19.278 0.5 44.99 ? O2A NAD 602 A 1 
HETATM 4 O O5B NAD . . . D 3 32.638 -14.923 -20.001 0.5 44.61 ? O5B NAD 602 A 1 
HETATM 5 C C5B NAD . . . D 3 33.142 -15.743 -21.049 0.5 44.93 ? C5B NAD 602 A 1 
HETATM 6 C C4B NAD . . . D 3 34.653 -15.591 -21.092 0.5 44.76 ? C4B NAD 602 A 1 
HETATM 7 O O4B NAD . . . D 3 35.196 -16.255 -22.236 0.5 44.51 ? O4B NAD 602 A 1 
HETATM 8 C C3B NAD . . . D 3 35.058 -14.131 -21.19 0.5 44.79 ? C3B NAD 602 A 1 
HETATM 9 O O3B NAD . . . D 3 35.845 -13.774 -20.051 0.5 45.28 ? O3B NAD 602 A 1 
HETATM 10 C C2B NAD . . . D 3 35.862 -14.015 -22.472 0.5 44.43 ? C2B NAD 602 A 1 
HETATM 11 O O2B NAD . . . D 3 37.032 -13.211 -22.299 0.5 44.22 ? O2B NAD 602 A 1 
HETATM 12 C C1B NAD . . . D 3 36.227 -15.45 -22.808 0.5 43.61 ? C1B NAD 602 A 1 
HETATM 13 N N9A NAD . . . D 3 36.313 -15.656 -24.269 0.5 42.42 ? N9A NAD 602 A 1 
HETATM 14 C C8A NAD . . . D 3 35.536 -15.076 -25.202 0.5 42.54 ? C8A NAD 602 A 1 
HETATM 15 N N7A NAD . . . D 3 35.891 -15.496 -26.445 0.5 42.14 ? N7A NAD 602 A 1 
HETATM 16 C C5A NAD . . . D 3 36.914 -16.358 -26.303 0.5 41.46 ? C5A NAD 602 A 1 
HETATM 17 C C6A NAD . . . D 3 37.761 -17.162 -27.206 0.5 40.91 ? C6A NAD 602 A 1 
HETATM 18 N N6A NAD . . . D 3 37.57 -17.122 -28.545 0.5 40.85 ? N6A NAD 602 A 1 
HETATM 19 N N1A NAD . . . D 3 38.718 -17.933 -26.646 0.5 41.1 ? N1A NAD 602 A 1 
HETATM 20 C C2A NAD . . . D 3 38.919 -17.982 -25.312 0.5 41.08 ? C2A NAD 602 A 1 
HETATM 21 N N3A NAD . . . D 3 38.184 -17.272 -24.438 0.5 41.09 ? N3A NAD 602 A 1 
HETATM 22 C C4A NAD . . . D 3 37.188 -16.461 -24.866 0.5 41.5 ? C4A NAD 602 A 1 
HETATM 23 O O3 NAD . . . D 3 31.005 -15.895 -18.358 0.5 45.57 ? O3 NAD 602 A 1 
HETATM 24 P PN NAD . . . D 3 30.115 -17.243 -18.331 0.5 47.4 ? PN NAD 602 A 1 
HETATM 25 O O1N NAD . . . D 3 30.517 -18.072 -17.132 0.5 46.15 ? O1N NAD 602 A 1 
HETATM 26 O O2N NAD . . . D 3 30.152 -17.86 -19.708 0.5 45.96 ? O2N NAD 602 A 1 
HETATM 27 O O5D NAD . . . D 3 28.624 -16.685 -18.061 0.5 46.59 ? O5D NAD 602 A 1 
HETATM 28 C C5D NAD . . . D 3 27.908 -17.1 -16.901 0.5 46.98 ? C5D NAD 602 A 1 
HETATM 29 C C4D NAD . . . D 3 27.319 -15.886 -16.194 0.5 47.07 ? C4D NAD 602 A 1 
HETATM 30 O O4D NAD . . . D 3 26.973 -16.21 -14.844 0.5 46.1 ? O4D NAD 602 A 1 
HETATM 31 C C3D NAD . . . D 3 28.295 -14.717 -16.119 0.5 47.65 ? C3D NAD 602 A 1 
HETATM 32 O O3D NAD . . . D 3 27.817 -13.617 -16.899 0.5 47.41 ? O3D NAD 602 A 1 
HETATM 33 C C2D NAD . . . D 3 28.376 -14.337 -14.649 0.5 47.12 ? C2D NAD 602 A 1 
HETATM 34 O O2D NAD . . . D 3 28.308 -12.918 -14.465 0.5 47.2 ? O2D NAD 602 A 1 
HETATM 35 C C1D NAD . . . D 3 27.181 -15.049 -14.039 0.5 46.27 ? C1D NAD 602 A 1 
HETATM 36 N N1N NAD . . . D 3 27.364 -15.422 -12.635 0.5 46.42 ? N1N NAD 602 A 1 
HETATM 37 C C2N NAD . . . D 3 26.71 -14.734 -11.692 0.5 45.88 ? C2N NAD 602 A 1 
HETATM 38 C C3N NAD . . . D 3 26.844 -15.068 -10.354 0.5 44.94 ? C3N NAD 602 A 1 
HETATM 39 C C7N NAD . . . D 3 26.086 -14.297 -9.32 0.5 44.07 ? C7N NAD 602 A 1 
HETATM 40 O O7N NAD . . . D 3 25.412 -14.914 -8.509 0.5 42.36 ? O7N NAD 602 A 1 
HETATM 41 N N7N NAD . . . D 3 26.141 -12.969 -9.33 0.5 44.66 ? N7N NAD 602 A 1 
HETATM 42 C C4N NAD . . . D 3 27.655 -16.135 -9.999 0.5 45.54 ? C4N NAD 602 A 1 
HETATM 43 C C5N NAD . . . D 3 28.32 -16.838 -10.993 0.5 45.09 ? C5N NAD 602 A 1 
HETATM 44 C C6N NAD . . . D 3 28.147 -16.457 -12.318 0.5 45.8 ? C6N NAD 602 A 1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           44 
#