data_4GAP # _model_server_result.job_id XXvcUqTZmaNlOIGYV5n8-g _model_server_result.datetime_utc '2024-11-24 13:43:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gap # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":602}' # _entry.id 4GAP # _exptl.entry_id 4GAP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GAP _cell.length_a 116.013 _cell.length_b 164.478 _cell.length_c 70.192 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GAP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 313 n n PA O2A NAD sing 314 n n PA O5B NAD sing 315 n n PA O3 NAD sing 316 n n O2A HOA2 NAD sing 317 n n O5B C5B NAD sing 318 n n C5B C4B NAD sing 319 n n C5B H51A NAD sing 320 n n C5B H52A NAD sing 321 n n C4B O4B NAD sing 322 n n C4B C3B NAD sing 323 n n C4B H4B NAD sing 324 n n O4B C1B NAD sing 325 n n C3B O3B NAD sing 326 n n C3B C2B NAD sing 327 n n C3B H3B NAD sing 328 n n O3B HO3A NAD sing 329 n n C2B O2B NAD sing 330 n n C2B C1B NAD sing 331 n n C2B H2B NAD sing 332 n n O2B HO2A NAD sing 333 n n C1B N9A NAD sing 334 n n C1B H1B NAD sing 335 n n N9A C8A NAD sing 336 n y N9A C4A NAD sing 337 n y C8A N7A NAD doub 338 n y C8A H8A NAD sing 339 n n N7A C5A NAD sing 340 n y C5A C6A NAD sing 341 n y C5A C4A NAD doub 342 n y C6A N6A NAD sing 343 n n C6A N1A NAD doub 344 n y N6A H61A NAD sing 345 n n N6A H62A NAD sing 346 n n N1A C2A NAD sing 347 n y C2A N3A NAD doub 348 n y C2A H2A NAD sing 349 n n N3A C4A NAD sing 350 n y O3 PN NAD sing 351 n n PN O1N NAD doub 352 n n PN O2N NAD sing 353 n n PN O5D NAD sing 354 n n O5D C5D NAD sing 355 n n C5D C4D NAD sing 356 n n C5D H51N NAD sing 357 n n C5D H52N NAD sing 358 n n C4D O4D NAD sing 359 n n C4D C3D NAD sing 360 n n C4D H4D NAD sing 361 n n O4D C1D NAD sing 362 n n C3D O3D NAD sing 363 n n C3D C2D NAD sing 364 n n C3D H3D NAD sing 365 n n O3D HO3N NAD sing 366 n n C2D O2D NAD sing 367 n n C2D C1D NAD sing 368 n n C2D H2D NAD sing 369 n n O2D HO2N NAD sing 370 n n C1D N1N NAD sing 371 n n C1D H1D NAD sing 372 n n N1N C2N NAD sing 373 n y N1N C6N NAD doub 374 n y C2N C3N NAD doub 375 n y C2N H2N NAD sing 376 n n C3N C7N NAD sing 377 n n C3N C4N NAD sing 378 n y C7N O7N NAD doub 379 n n C7N N7N NAD sing 380 n n N7N H71N NAD sing 381 n n N7N H72N NAD sing 382 n n C4N C5N NAD doub 383 n y C4N H4N NAD sing 384 n n C5N C6N NAD sing 385 n y C5N H5N NAD sing 386 n n C6N H6N NAD sing 387 n n # _atom_sites.entry_id 4GAP _atom_sites.fract_transf_matrix[1][1] 0.00862 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00608 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014247 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 601 601 FAD FAD . D 3 NAD A 1 602 602 NAD NAD . E 2 FAD B 1 601 601 FAD FAD . F 3 NAD B 1 602 602 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . F 3 4.748 -64.466 -16.219 0.5 41.03 ? PA NAD 602 B 1 HETATM 2 O O1A NAD . . . F 3 5.623 -65.263 -17.159 0.5 38.98 ? O1A NAD 602 B 1 HETATM 3 O O2A NAD . . . F 3 4.768 -64.76 -14.735 0.5 41.36 ? O2A NAD 602 B 1 HETATM 4 O O5B NAD . . . F 3 3.217 -64.589 -16.722 0.5 38.33 ? O5B NAD 602 B 1 HETATM 5 C C5B NAD . . . F 3 2.769 -64.073 -17.975 0.5 36.87 ? C5B NAD 602 B 1 HETATM 6 C C4B NAD . . . F 3 1.242 -64.02 -17.972 0.5 35.9 ? C4B NAD 602 B 1 HETATM 7 O O4B NAD . . . F 3 0.718 -63.609 -19.246 0.5 35.44 ? O4B NAD 602 B 1 HETATM 8 C C3B NAD . . . F 3 0.627 -65.378 -17.682 0.5 35 ? C3B NAD 602 B 1 HETATM 9 O O3B NAD . . . F 3 -0.341 -65.245 -16.641 0.5 33.84 ? O3B NAD 602 B 1 HETATM 10 C C2B NAD . . . F 3 -0.048 -65.796 -18.974 0.5 34.74 ? C2B NAD 602 B 1 HETATM 11 O O2B NAD . . . F 3 -1.211 -66.592 -18.729 0.5 34.92 ? O2B NAD 602 B 1 HETATM 12 C C1B NAD . . . F 3 -0.371 -64.462 -19.628 0.5 34 ? C1B NAD 602 B 1 HETATM 13 N N9A NAD . . . F 3 -0.466 -64.533 -21.107 0.5 33.05 ? N9A NAD 602 B 1 HETATM 14 C C8A NAD . . . F 3 0.308 -65.278 -21.926 0.5 33 ? C8A NAD 602 B 1 HETATM 15 N N7A NAD . . . F 3 -0.041 -65.09 -23.228 0.5 32.11 ? N7A NAD 602 B 1 HETATM 16 C C5A NAD . . . F 3 -1.053 -64.206 -23.25 0.5 31.83 ? C5A NAD 602 B 1 HETATM 17 C C6A NAD . . . F 3 -1.892 -63.574 -24.29 0.5 31.26 ? C6A NAD 602 B 1 HETATM 18 N N6A NAD . . . F 3 -1.701 -63.862 -25.596 0.5 31.08 ? N6A NAD 602 B 1 HETATM 19 N N1A NAD . . . F 3 -2.845 -62.705 -23.889 0.5 31.38 ? N1A NAD 602 B 1 HETATM 20 C C2A NAD . . . F 3 -3.049 -62.411 -22.587 0.5 31.53 ? C2A NAD 602 B 1 HETATM 21 N N3A NAD . . . F 3 -2.321 -62.952 -21.59 0.5 31.98 ? N3A NAD 602 B 1 HETATM 22 C C4A NAD . . . F 3 -1.33 -63.84 -21.851 0.5 32.39 ? C4A NAD 602 B 1 HETATM 23 O O3 NAD . . . F 3 5.127 -62.903 -16.343 0.5 42.45 ? O3 NAD 602 B 1 HETATM 24 P PN NAD . . . F 3 6.401 -62.313 -15.532 0.5 45.28 ? PN NAD 602 B 1 HETATM 25 O O1N NAD . . . F 3 6.85 -61.037 -16.211 0.5 43.74 ? O1N NAD 602 B 1 HETATM 26 O O2N NAD . . . F 3 7.407 -63.427 -15.318 0.5 44.31 ? O2N NAD 602 B 1 HETATM 27 O O5D NAD . . . F 3 5.784 -61.932 -14.086 0.5 43.05 ? O5D NAD 602 B 1 HETATM 28 C C5D NAD . . . F 3 6.639 -61.756 -12.953 0.5 41.62 ? C5D NAD 602 B 1 HETATM 29 C C4D NAD . . . F 3 7.597 -62.932 -12.812 0.5 41.19 ? C4D NAD 602 B 1 HETATM 30 O O4D NAD . . . F 3 8.382 -62.782 -11.627 0.5 40.88 ? O4D NAD 602 B 1 HETATM 31 C C3D NAD . . . F 3 6.864 -64.253 -12.677 0.5 41.21 ? C3D NAD 602 B 1 HETATM 32 O O3D NAD . . . F 3 7.551 -65.228 -13.47 0.5 40.15 ? O3D NAD 602 B 1 HETATM 33 C C2D NAD . . . F 3 6.888 -64.573 -11.187 0.5 40.82 ? C2D NAD 602 B 1 HETATM 34 O O2D NAD . . . F 3 7.011 -65.976 -10.916 0.5 41.13 ? O2D NAD 602 B 1 HETATM 35 C C1D NAD . . . F 3 8.092 -63.809 -10.669 0.5 40.31 ? C1D NAD 602 B 1 HETATM 36 N N1N NAD . . . F 3 7.866 -63.184 -9.366 0.5 39.87 ? N1N NAD 602 B 1 HETATM 37 C C2N NAD . . . F 3 8.484 -63.655 -8.273 0.5 39.7 ? C2N NAD 602 B 1 HETATM 38 C C3N NAD . . . F 3 8.285 -63.054 -7.035 0.5 38.77 ? C3N NAD 602 B 1 HETATM 39 C C7N NAD . . . F 3 8.987 -63.556 -5.811 0.5 37.53 ? C7N NAD 602 B 1 HETATM 40 O O7N NAD . . . F 3 9.516 -62.738 -5.073 0.5 35.65 ? O7N NAD 602 B 1 HETATM 41 N N7N NAD . . . F 3 9.04 -64.862 -5.578 0.5 37.38 ? N7N NAD 602 B 1 HETATM 42 C C4N NAD . . . F 3 7.456 -61.948 -6.943 0.5 39.34 ? C4N NAD 602 B 1 HETATM 43 C C5N NAD . . . F 3 6.834 -61.477 -8.089 0.5 39.44 ? C5N NAD 602 B 1 HETATM 44 C C6N NAD . . . F 3 7.067 -62.121 -9.299 0.5 39.55 ? C6N NAD 602 B 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 44 #