data_4GAV # _model_server_result.job_id XqZqcH7lJXa4FsPe1VoiOQ _model_server_result.datetime_utc '2024-11-13 20:49:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gav # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":602}' # _entry.id 4GAV # _exptl.entry_id 4GAV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 318.407 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UBIQUINONE-2 _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GAV _cell.length_a 65.589 _cell.length_b 111.926 _cell.length_c 165.525 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GAV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C19 H26 O4' _chem_comp.formula_weight 318.407 _chem_comp.id UQ2 _chem_comp.mon_nstd_flag . _chem_comp.name UBIQUINONE-2 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 UQ2 sing 434 n n C1 C6 UQ2 sing 435 n n C1 O1 UQ2 doub 436 n n C2 C3 UQ2 doub 437 n n C2 O2 UQ2 sing 438 n n C3 C4 UQ2 sing 439 n n C3 O3 UQ2 sing 440 n n C4 C5 UQ2 sing 441 n n C4 O4 UQ2 doub 442 n n C5 C6 UQ2 doub 443 n n C5 CM5 UQ2 sing 444 n n C6 C7 UQ2 sing 445 n n CM2 O2 UQ2 sing 446 n n CM2 H2M1 UQ2 sing 447 n n CM2 H2M2 UQ2 sing 448 n n CM2 H2M3 UQ2 sing 449 n n CM3 O3 UQ2 sing 450 n n CM3 H3M1 UQ2 sing 451 n n CM3 H3M2 UQ2 sing 452 n n CM3 H3M3 UQ2 sing 453 n n CM5 H5M1 UQ2 sing 454 n n CM5 H5M2 UQ2 sing 455 n n CM5 H5M3 UQ2 sing 456 n n C7 C8 UQ2 sing 457 n n C7 H71 UQ2 sing 458 n n C7 H72 UQ2 sing 459 n n C8 C9 UQ2 doub 460 e n C8 H8 UQ2 sing 461 n n C9 C10 UQ2 sing 462 n n C9 C11 UQ2 sing 463 n n C10 H101 UQ2 sing 464 n n C10 H102 UQ2 sing 465 n n C10 H103 UQ2 sing 466 n n C11 C12 UQ2 sing 467 n n C11 H111 UQ2 sing 468 n n C11 H112 UQ2 sing 469 n n C12 C13 UQ2 sing 470 n n C12 H121 UQ2 sing 471 n n C12 H122 UQ2 sing 472 n n C13 C14 UQ2 doub 473 n n C13 H13 UQ2 sing 474 n n C14 C15 UQ2 sing 475 n n C14 C16 UQ2 sing 476 n n C15 H151 UQ2 sing 477 n n C15 H152 UQ2 sing 478 n n C15 H153 UQ2 sing 479 n n C16 H161 UQ2 sing 480 n n C16 H162 UQ2 sing 481 n n C16 H163 UQ2 sing 482 n n # _atom_sites.entry_id 4GAV _atom_sites.fract_transf_matrix[1][1] 0.015246 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008934 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006041 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 601 601 FAD FAD . D 3 UQ2 A 1 602 602 UQ2 UQ2 . E 2 FAD B 1 601 601 FAD FAD . F 3 UQ2 B 1 602 602 UQ2 UQ2 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 UQ2 . . . F 3 -5.053 -29.355 15.619 0.5 78.47 ? C1 UQ2 602 B 1 HETATM 2 C C2 UQ2 . . . F 3 -6.399 -30 15.599 0.5 79.53 ? C2 UQ2 602 B 1 HETATM 3 C C3 UQ2 . . . F 3 -6.862 -30.788 16.77 0.5 78.65 ? C3 UQ2 602 B 1 HETATM 4 C C4 UQ2 . . . F 3 -5.986 -30.929 17.957 0.5 79.95 ? C4 UQ2 602 B 1 HETATM 5 C C5 UQ2 . . . F 3 -4.646 -30.292 17.974 0.5 79.46 ? C5 UQ2 602 B 1 HETATM 6 C C6 UQ2 . . . F 3 -4.176 -29.501 16.81 0.5 77.28 ? C6 UQ2 602 B 1 HETATM 7 C CM2 UQ2 . . . F 3 -7.825 -31.049 13.945 0.5 76.32 ? CM2 UQ2 602 B 1 HETATM 8 C CM3 UQ2 . . . F 3 -9.21 -30.65 17.301 0.5 73.56 ? CM3 UQ2 602 B 1 HETATM 9 C CM5 UQ2 . . . F 3 -3.772 -30.43 19.19 0.5 80.17 ? CM5 UQ2 602 B 1 HETATM 10 C C7 UQ2 . . . F 3 -2.814 -28.848 16.855 0.5 75.62 ? C7 UQ2 602 B 1 HETATM 11 C C8 UQ2 . . . F 3 -2.726 -27.926 18.054 0.5 73.47 ? C8 UQ2 602 B 1 HETATM 12 C C9 UQ2 . . . F 3 -3.036 -26.625 17.939 0.5 71.65 ? C9 UQ2 602 B 1 HETATM 13 C C10 UQ2 . . . F 3 -3.466 -26.112 16.603 0.5 71.51 ? C10 UQ2 602 B 1 HETATM 14 C C11 UQ2 . . . F 3 -2.948 -25.701 19.138 0.5 70.46 ? C11 UQ2 602 B 1 HETATM 15 C C12 UQ2 . . . F 3 -3.398 -24.27 18.831 0.5 67.58 ? C12 UQ2 602 B 1 HETATM 16 C C13 UQ2 . . . F 3 -2.221 -23.403 18.433 0.5 67.45 ? C13 UQ2 602 B 1 HETATM 17 C C14 UQ2 . . . F 3 -2.354 -22.074 18.254 0.5 66.03 ? C14 UQ2 602 B 1 HETATM 18 C C15 UQ2 . . . F 3 -1.178 -21.231 17.844 0.5 63.6 ? C15 UQ2 602 B 1 HETATM 19 C C16 UQ2 . . . F 3 -3.683 -21.421 18.461 0.5 62.13 ? C16 UQ2 602 B 1 HETATM 20 O O1 UQ2 . . . F 3 -4.657 -28.69 14.64 0.5 77.63 ? O1 UQ2 602 B 1 HETATM 21 O O2 UQ2 . . . F 3 -7.226 -29.883 14.511 0.5 78.11 ? O2 UQ2 602 B 1 HETATM 22 O O3 UQ2 . . . F 3 -8.101 -31.369 16.758 0.5 77.49 ? O3 UQ2 602 B 1 HETATM 23 O O4 UQ2 . . . F 3 -6.374 -31.587 18.945 0.5 84.97 ? O4 UQ2 602 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #