data_4GB1
#
_model_server_result.job_id            12-qXPEm-GylKWCUWiNMmQ 
_model_server_result.datetime_utc      '2024-10-13 04:18:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4gb1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    4GB1 
#
_exptl.entry_id    4GB1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              407.414 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            '5-acetamido-2,6-anhydro-3,5-dideoxy-3-[(2E)-3-phenylprop-2-en-1-yl]-D-glycero-L-altro-non-2-enonic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4GB1 
_cell.length_a            90.501 
_cell.length_b            90.501 
_cell.length_c            108.731 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4GB1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        79 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 
4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 10 A CYS 92 1_555 A SG CYS 337 A CYS 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 A SG CYS 42 A CYS 124 1_555 A SG CYS 47 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf3 A SG CYS 102 A CYS 185 1_555 A SG CYS 149 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 A SG CYS 151 A CYS 234 1_555 A SG CYS 156 A CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 A SG CYS 197 A CYS 280 1_555 A SG CYS 210 A CYS 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
disulf ? disulf6 A SG CYS 199 A CYS 282 1_555 A SG CYS 208 A CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf7 A SG CYS 236 A CYS 320 1_555 A SG CYS 255 A CYS 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf8 A SG CYS 341 A CYS 431 1_555 A SG CYS 366 A CYS 457 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc1 A O ASP 212 A ASP 295 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? 
metalc ? metalc2 A O GLY 216 A GLY 299 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.053 ? 
metalc ? metalc3 A OD1 ASP 242 A ASP 326 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.994 ? 
metalc ? metalc4 A O TYR 264 A TYR 352 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
#
_chem_comp.formula           'C20 H25 N O8' 
_chem_comp.formula_weight    407.414 
_chem_comp.id                0LP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '5-acetamido-2,6-anhydro-3,5-dideoxy-3-[(2E)-3-phenylprop-2-en-1-yl]-D-glycero-L-altro-non-2-enonic acid' 
_chem_comp.type              l-saccharide 
_chem_comp.pdbx_synonyms     '5-(acetylamino)-2,6-anhydro-3,5-dideoxy-3-[(2E)-3-phenylprop-2-en-1-yl]-D-glycero-L-altro-non-2-enonic acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C11 C10 0LP sing 1 n n 
O8 C8 0LP sing 2 n n 
C9 O9 0LP sing 3 n n 
C9 C8 0LP sing 4 n n 
N5 C10 0LP sing 5 n n 
N5 C5 0LP sing 6 n n 
C10 O10 0LP doub 7 n n 
C8 C7 0LP sing 8 n n 
C6 C5 0LP sing 9 n n 
C6 C7 0LP sing 10 n n 
C6 O6 0LP sing 11 n n 
C5 C4 0LP sing 12 n n 
C4 O4 0LP sing 13 n n 
C4 C3 0LP sing 14 n n 
C7 O7 0LP sing 15 n n 
O6 C2 0LP sing 16 n n 
C3 CAQ 0LP sing 17 n n 
C3 C2 0LP doub 18 n n 
CAQ CAI 0LP sing 19 n n 
C2 C1 0LP sing 20 n n 
O1A C1 0LP doub 21 n n 
C1 O1B 0LP sing 22 n n 
CAJ CAI 0LP doub 23 e n 
CAJ CAX 0LP sing 24 n n 
CAX CAO 0LP doub 25 n y 
CAX CAN 0LP sing 26 n y 
CAO CAM 0LP sing 27 n y 
CAN CAL 0LP doub 28 n y 
CAM CAK 0LP doub 29 n y 
CAL CAK 0LP sing 30 n y 
C11 H111 0LP sing 31 n n 
C11 H112 0LP sing 32 n n 
C11 H113 0LP sing 33 n n 
N5 HN5 0LP sing 34 n n 
C5 H5 0LP sing 35 n n 
C4 H4 0LP sing 36 n n 
O4 HO4 0LP sing 37 n n 
C6 H6 0LP sing 38 n n 
C7 H7 0LP sing 39 n n 
O7 HO7 0LP sing 40 n n 
C8 H8 0LP sing 41 n n 
O8 HO8 0LP sing 42 n n 
C9 H91 0LP sing 43 n n 
C9 H92 0LP sing 44 n n 
O9 HO9 0LP sing 45 n n 
O1B HO1B 0LP sing 46 n n 
CAQ H17 0LP sing 47 n n 
CAQ H18 0LP sing 48 n n 
CAI H19 0LP sing 49 n n 
CAJ H20 0LP sing 50 n n 
CAN H21 0LP sing 51 n n 
CAL H22 0LP sing 52 n n 
CAK H23 0LP sing 53 n n 
CAM H24 0LP sing 54 n n 
CAO H25 0LP sing 55 n n 
#
_atom_sites.entry_id                     4GB1 
_atom_sites.fract_transf_matrix[1][1]    0.01105 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01105 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009197 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 0LP A 1 501 1 0LP DRG . 
C 3 CA A 1 502 1 CA CA . 
D 4 HOH A 1 601 1 HOH HOH . 
D 4 HOH A 2 602 2 HOH HOH . 
D 4 HOH A 3 603 3 HOH HOH . 
D 4 HOH A 4 604 4 HOH HOH . 
D 4 HOH A 5 605 5 HOH HOH . 
D 4 HOH A 6 606 6 HOH HOH . 
D 4 HOH A 7 607 7 HOH HOH . 
D 4 HOH A 8 608 8 HOH HOH . 
D 4 HOH A 9 609 9 HOH HOH . 
D 4 HOH A 10 610 10 HOH HOH . 
D 4 HOH A 11 611 11 HOH HOH . 
D 4 HOH A 12 612 12 HOH HOH . 
D 4 HOH A 13 613 13 HOH HOH . 
D 4 HOH A 14 614 14 HOH HOH . 
D 4 HOH A 15 615 15 HOH HOH . 
D 4 HOH A 16 616 16 HOH HOH . 
D 4 HOH A 17 617 17 HOH HOH . 
D 4 HOH A 18 618 18 HOH HOH . 
D 4 HOH A 19 619 19 HOH HOH . 
D 4 HOH A 20 620 20 HOH HOH . 
D 4 HOH A 21 621 21 HOH HOH . 
D 4 HOH A 22 622 22 HOH HOH . 
D 4 HOH A 23 623 23 HOH HOH . 
D 4 HOH A 24 624 24 HOH HOH . 
D 4 HOH A 25 625 25 HOH HOH . 
D 4 HOH A 26 626 26 HOH HOH . 
D 4 HOH A 27 627 27 HOH HOH . 
D 4 HOH A 28 628 28 HOH HOH . 
D 4 HOH A 29 629 29 HOH HOH . 
D 4 HOH A 30 630 30 HOH HOH . 
D 4 HOH A 31 631 31 HOH HOH . 
D 4 HOH A 32 632 32 HOH HOH . 
D 4 HOH A 33 633 33 HOH HOH . 
D 4 HOH A 34 634 34 HOH HOH . 
D 4 HOH A 35 635 35 HOH HOH . 
D 4 HOH A 36 636 36 HOH HOH . 
D 4 HOH A 37 637 37 HOH HOH . 
D 4 HOH A 38 638 38 HOH HOH . 
D 4 HOH A 39 639 39 HOH HOH . 
D 4 HOH A 40 640 40 HOH HOH . 
D 4 HOH A 41 641 41 HOH HOH . 
D 4 HOH A 42 642 42 HOH HOH . 
D 4 HOH A 43 643 43 HOH HOH . 
D 4 HOH A 44 644 44 HOH HOH . 
D 4 HOH A 45 645 45 HOH HOH . 
D 4 HOH A 46 646 46 HOH HOH . 
D 4 HOH A 47 647 48 HOH HOH . 
D 4 HOH A 48 648 49 HOH HOH . 
D 4 HOH A 49 649 50 HOH HOH . 
D 4 HOH A 50 650 51 HOH HOH . 
D 4 HOH A 51 651 52 HOH HOH . 
D 4 HOH A 52 652 53 HOH HOH . 
D 4 HOH A 53 653 54 HOH HOH . 
D 4 HOH A 54 654 55 HOH HOH . 
D 4 HOH A 55 655 56 HOH HOH . 
D 4 HOH A 56 656 57 HOH HOH . 
D 4 HOH A 57 657 58 HOH HOH . 
D 4 HOH A 58 658 59 HOH HOH . 
D 4 HOH A 59 659 60 HOH HOH . 
D 4 HOH A 60 660 61 HOH HOH . 
D 4 HOH A 61 661 62 HOH HOH . 
D 4 HOH A 62 662 63 HOH HOH . 
D 4 HOH A 63 663 64 HOH HOH . 
D 4 HOH A 64 664 65 HOH HOH . 
D 4 HOH A 65 665 66 HOH HOH . 
D 4 HOH A 66 666 67 HOH HOH . 
D 4 HOH A 67 667 68 HOH HOH . 
D 4 HOH A 68 668 69 HOH HOH . 
D 4 HOH A 69 669 70 HOH HOH . 
D 4 HOH A 70 670 71 HOH HOH . 
D 4 HOH A 71 671 72 HOH HOH . 
D 4 HOH A 72 672 73 HOH HOH . 
D 4 HOH A 73 673 74 HOH HOH . 
D 4 HOH A 74 674 75 HOH HOH . 
D 4 HOH A 75 675 76 HOH HOH . 
D 4 HOH A 76 676 77 HOH HOH . 
D 4 HOH A 77 677 78 HOH HOH . 
D 4 HOH A 78 678 79 HOH HOH . 
D 4 HOH A 79 679 80 HOH HOH . 
D 4 HOH A 80 680 81 HOH HOH . 
D 4 HOH A 81 681 82 HOH HOH . 
D 4 HOH A 82 682 83 HOH HOH . 
D 4 HOH A 83 683 84 HOH HOH . 
D 4 HOH A 84 684 85 HOH HOH . 
D 4 HOH A 85 685 86 HOH HOH . 
D 4 HOH A 86 686 87 HOH HOH . 
D 4 HOH A 87 687 88 HOH HOH . 
D 4 HOH A 88 688 89 HOH HOH . 
D 4 HOH A 89 689 90 HOH HOH . 
D 4 HOH A 90 690 91 HOH HOH . 
D 4 HOH A 91 691 92 HOH HOH . 
D 4 HOH A 92 692 93 HOH HOH . 
D 4 HOH A 93 693 94 HOH HOH . 
D 4 HOH A 94 694 95 HOH HOH . 
D 4 HOH A 95 695 96 HOH HOH . 
D 4 HOH A 96 696 97 HOH HOH . 
D 4 HOH A 97 697 98 HOH HOH . 
D 4 HOH A 98 698 99 HOH HOH . 
D 4 HOH A 99 699 100 HOH HOH . 
D 4 HOH A 100 700 101 HOH HOH . 
D 4 HOH A 101 701 102 HOH HOH . 
D 4 HOH A 102 702 103 HOH HOH . 
D 4 HOH A 103 703 104 HOH HOH . 
D 4 HOH A 104 704 105 HOH HOH . 
D 4 HOH A 105 705 106 HOH HOH . 
D 4 HOH A 106 706 107 HOH HOH . 
D 4 HOH A 107 707 108 HOH HOH . 
D 4 HOH A 108 708 109 HOH HOH . 
D 4 HOH A 109 709 110 HOH HOH . 
D 4 HOH A 110 710 111 HOH HOH . 
D 4 HOH A 111 711 112 HOH HOH . 
D 4 HOH A 112 712 113 HOH HOH . 
D 4 HOH A 113 713 114 HOH HOH . 
D 4 HOH A 114 714 115 HOH HOH . 
D 4 HOH A 115 715 116 HOH HOH . 
D 4 HOH A 116 716 117 HOH HOH . 
D 4 HOH A 117 717 118 HOH HOH . 
D 4 HOH A 118 718 119 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C11 0LP . . . B 2 -16.009 26.19 6.898 1 29.05 ? C11 0LP 501 A 1 
HETATM 2 C C10 0LP . . . B 2 -16.563 25.661 8.212 1 35 ? C10 0LP 501 A 1 
HETATM 3 O O10 0LP . . . B 2 -15.853 25.721 9.22 1 37.2 ? O10 0LP 501 A 1 
HETATM 4 N N5 0LP . . . B 2 -17.827 25.148 8.138 1 28.02 ? N5 0LP 501 A 1 
HETATM 5 C C5 0LP . . . B 2 -18.565 24.593 9.305 1 32.69 ? C5 0LP 501 A 1 
HETATM 6 C C4 0LP . . . B 2 -18.211 23.081 9.437 1 34.83 ? C4 0LP 501 A 1 
HETATM 7 O O4 0LP . . . B 2 -16.857 22.966 9.95 1 36.74 ? O4 0LP 501 A 1 
HETATM 8 C C6 0LP . . . B 2 -20.105 24.836 9.131 1 32.56 ? C6 0LP 501 A 1 
HETATM 9 C C7 0LP . . . B 2 -20.673 26.165 9.644 1 31.46 ? C7 0LP 501 A 1 
HETATM 10 O O7 0LP . . . B 2 -19.658 27.049 10.155 1 36.88 ? O7 0LP 501 A 1 
HETATM 11 C C8 0LP . . . B 2 -21.673 26.797 8.607 1 33.62 ? C8 0LP 501 A 1 
HETATM 12 O O8 0LP . . . B 2 -22.168 25.922 7.558 1 30.52 ? O8 0LP 501 A 1 
HETATM 13 C C9 0LP . . . B 2 -21.059 28.021 7.956 1 35.91 ? C9 0LP 501 A 1 
HETATM 14 O O9 0LP . . . B 2 -21.926 29.08 8.315 1 31.77 ? O9 0LP 501 A 1 
HETATM 15 O O6 0LP . . . B 2 -20.935 23.949 9.873 1 39.43 ? O6 0LP 501 A 1 
HETATM 16 C C2 0LP . . . B 2 -20.51 22.769 10.443 1 42.77 ? C2 0LP 501 A 1 
HETATM 17 C C1 0LP . . . B 2 -21.605 22.227 11.179 1 36.66 ? C1 0LP 501 A 1 
HETATM 18 O O1B 0LP . . . B 2 -21.434 21.328 12.064 1 32.54 ? O1B 0LP 501 A 1 
HETATM 19 O O1A 0LP . . . B 2 -22.778 22.686 10.914 1 24.03 ? O1A 0LP 501 A 1 
HETATM 20 C C3 0LP . . . B 2 -19.164 22.285 10.172 1 36.7 ? C3 0LP 501 A 1 
HETATM 21 C CAQ 0LP . . . B 2 -18.719 20.837 10.439 1 34.42 ? CAQ 0LP 501 A 1 
HETATM 22 C CAI 0LP . . . B 2 -17.918 20.579 11.715 1 38.43 ? CAI 0LP 501 A 1 
HETATM 23 C CAJ 0LP . . . B 2 -16.668 19.972 11.575 1 38.97 ? CAJ 0LP 501 A 1 
HETATM 24 C CAX 0LP . . . B 2 -15.893 19.739 12.883 1 39.63 ? CAX 0LP 501 A 1 
HETATM 25 C CAN 0LP . . . B 2 -16.535 19.165 13.997 1 42.83 ? CAN 0LP 501 A 1 
HETATM 26 C CAL 0LP . . . B 2 -15.88 18.922 15.209 1 47.43 ? CAL 0LP 501 A 1 
HETATM 27 C CAK 0LP . . . B 2 -14.537 19.262 15.331 1 51.01 ? CAK 0LP 501 A 1 
HETATM 28 C CAM 0LP . . . B 2 -13.865 19.831 14.238 1 49.5 ? CAM 0LP 501 A 1 
HETATM 29 C CAO 0LP . . . B 2 -14.538 20.069 13.021 1 45.7 ? CAO 0LP 501 A 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           29 
#