data_4GB3 # _model_server_result.job_id i-7uFqtTWfqNHfVhoTnMYg _model_server_result.datetime_utc '2024-12-26 15:39:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gb3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":101}' # _entry.id 4GB3 # _exptl.entry_id 4GB3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 228.371 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MYRISTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4GB3 _cell.length_a 296.638 _cell.length_b 296.638 _cell.length_c 813.215 _cell.Z_PDB 198 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GB3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 240-MERIC 240 'complete icosahedral assembly' 1 ? tetrameric 4 'icosahedral asymmetric unit' 2 ? eicosameric 20 'icosahedral pentamer' 3 ? 24-meric 24 'icosahedral 23 hexamer' 4 ? tetrameric 4 'icosahedral asymmetric unit, std point frame' 5 ? 40-meric 40 'crystal asymmetric unit, crystal frame' 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 (1-60) A,B,C,D,E,F 2 1 A,B,C,D,E,F 3 (1-5) A,B,C,D,E,F 4 (1,2,6,10,23,24) A,B,C,D,E,F 5 P A,B,C,D,E,F 6 (X0)(1-10) # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0.5 0.645497 -0.57735 -0.309017 0.755761 0.57735 0.809017 -0.110264 0.57735 175.38757 -267.05375 -27.06857 X0 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.5 -0.645497 0.57735 0.866025 0.372678 -0.333333 0 0.666667 0.745356 -175.38757 272.52409 11.93877 3 'point symmetry operation' ? ? -0.309017 -0.178411 0.934172 0.755761 -0.64235 0.127322 0.57735 0.745356 0.333333 -432.10205 218.21814 202.52012 4 'point symmetry operation' ? ? -0.309017 0.755761 0.57735 -0.178411 -0.64235 0.745356 0.934172 0.127322 0.333333 -415.37275 -87.86887 308.36711 5 'point symmetry operation' ? ? 0.5 0.866025 0 -0.645497 0.372678 0.666667 0.57735 -0.333333 0.745356 -148.319 -222.7351 183.20279 6 'point symmetry operation' ? ? 0.309017 -0.178411 0.934172 -0.178411 -0.975684 -0.127322 0.934172 -0.127322 -0.333333 -340.43587 177.23341 510.88723 7 'point symmetry operation' ? ? 0 0.356822 0.934172 -0.934172 -0.333333 0.127322 0.356822 -0.872678 0.333333 -432.10205 -58.89288 308.36711 8 'point symmetry operation' ? ? 0.309017 0.755761 0.57735 -0.755761 0.563661 -0.333333 -0.57735 -0.333333 0.745356 -323.70657 15.62805 11.93876 9 'point symmetry operation' ? ? 0.809017 0.467086 0.356822 0.110264 0.475684 -0.872678 -0.57735 0.745356 0.333333 -165.0483 297.8108 31.2561 10 'point symmetry operation' ? ? 0.809017 -0.110264 0.57735 0.467086 -0.475684 -0.745356 0.356822 0.872678 -0.333333 -175.38757 397.6884 339.62321 11 'point symmetry operation' ? ? -0.809017 -0.467086 -0.356822 -0.467086 0.14235 0.872678 -0.356822 0.872678 -0.333333 -131.5897 -232.39376 233.77621 12 'point symmetry operation' ? ? -0.809017 0.110264 -0.57735 -0.110264 0.936339 0.333333 0.57735 0.333333 -0.745356 -121.25043 -101.26006 530.20456 13 'point symmetry operation' ? ? -0.309017 0.178411 -0.934172 0.755761 0.64235 -0.127322 0.57735 -0.745356 -0.333333 43.79787 177.23341 510.88723 14 'point symmetry operation' ? ? 0 -0.356822 -0.934172 0.934172 -0.333333 0.127322 -0.356822 -0.872678 0.333333 135.46405 218.21814 202.52012 15 'point symmetry operation' ? ? -0.309017 -0.755761 -0.57735 0.178411 -0.64235 0.745356 -0.934172 0.127322 0.333333 27.06857 -34.94538 31.25609 16 'point symmetry operation' ? ? -0.5 0.645497 -0.57735 0.645497 -0.166667 -0.745356 -0.57735 -0.745356 -0.333333 -121.25043 397.6884 339.6232 17 'point symmetry operation' ? ? 0.309017 0.178411 -0.934172 0.178411 -0.975684 -0.127322 -0.934172 -0.127322 -0.333333 135.46405 230.1569 233.77621 18 'point symmetry operation' ? ? 0.309017 -0.755761 -0.57735 -0.755761 -0.563661 0.333333 -0.57735 0.333333 -0.745356 118.73475 -68.55154 358.94053 19 'point symmetry operation' ? ? -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 -148.319 -85.63201 542.14332 20 'point symmetry operation' ? ? -1 0 0 0 0.745356 -0.666667 0 -0.666667 -0.745356 -296.638 202.52012 530.20456 21 'point symmetry operation' ? ? 0 0.356822 0.934172 0.934172 0.333333 -0.127322 -0.356822 0.872678 -0.333333 -432.10205 230.15691 233.77621 22 'point symmetry operation' ? ? 0.309017 0.755761 0.57735 0.755761 -0.563661 0.333333 0.57735 0.333333 -0.745356 -323.70657 155.63598 530.20456 23 'point symmetry operation' ? ? 0.809017 0.467086 0.356822 -0.110264 -0.475684 0.872678 0.57735 -0.745356 -0.333333 -165.04829 -126.54677 510.88723 24 'point symmetry operation' ? ? 0.809017 -0.110264 0.57735 -0.467086 0.475684 0.745356 -0.356822 -0.872678 0.333333 -175.38757 -226.42438 202.52012 25 'point symmetry operation' ? ? 0.309017 -0.178411 0.934172 0.178411 0.975684 0.127322 -0.934172 0.127322 0.333333 -340.43587 -5.96938 31.25609 26 'point symmetry operation' ? ? 0.809017 -0.467086 -0.356822 0.110264 -0.475684 0.872678 -0.57735 -0.745356 -0.333333 108.39548 -93.83825 339.6232 27 'point symmetry operation' ? ? 0 -0.934172 0.356822 -0.356822 0.333333 0.872678 -0.934172 -0.127322 -0.333333 -165.0483 -232.39376 233.77621 28 'point symmetry operation' ? ? -0.809017 -0.110264 0.57735 0.110264 0.936339 0.333333 -0.57735 0.333333 -0.745356 -415.37275 -68.55154 358.94053 29 'point symmetry operation' ? ? -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 -296.638 171.26403 542.14332 30 'point symmetry operation' ? ? 0.5 0.645497 -0.57735 0.866025 -0.372678 0.333333 0 -0.666667 -0.745356 27.06857 155.63598 530.20456 31 'point symmetry operation' ? ? -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -296.638 0 0 32 'point symmetry operation' ? ? 0.5 0.645497 -0.57735 -0.866025 0.372678 -0.333333 0 0.666667 0.745356 27.06857 15.62804 11.93877 33 'point symmetry operation' ? ? 0.809017 -0.467086 -0.356822 -0.110264 0.475684 -0.872678 0.57735 0.745356 0.333333 108.39548 265.10228 202.52012 34 'point symmetry operation' ? ? 0 -0.934172 0.356822 0.356822 -0.333333 -0.872678 0.934172 0.127322 0.333333 -165.0483 403.65779 308.36711 35 'point symmetry operation' ? ? -0.809017 -0.110264 0.57735 -0.110264 -0.936339 -0.333333 0.57735 -0.333333 0.745356 -415.37275 239.81557 183.20279 36 'point symmetry operation' ? ? -0.309017 -0.755761 -0.57735 -0.178411 0.64235 -0.745356 0.934172 -0.127322 -0.333333 27.06857 206.2094 510.88723 37 'point symmetry operation' ? ? -0.809017 -0.467086 -0.356822 0.467086 -0.14235 -0.872678 0.356822 -0.872678 0.333333 -131.58971 403.65779 308.36711 38 'point symmetry operation' ? ? -0.809017 0.110264 -0.57735 0.110264 -0.936339 -0.333333 -0.57735 -0.333333 0.745356 -121.25043 272.52408 11.93877 39 'point symmetry operation' ? ? -0.309017 0.178411 -0.934172 -0.755761 -0.64235 0.127322 -0.57735 0.745356 0.333333 43.79787 -5.96939 31.25609 40 'point symmetry operation' ? ? 0 -0.356822 -0.934172 -0.934172 0.333333 -0.127322 0.356822 0.872678 -0.333333 135.46405 -46.95411 339.6232 41 'point symmetry operation' ? ? 0 0.934172 -0.356822 0.356822 0.333333 0.872678 0.934172 -0.127322 -0.333333 -131.5897 -126.54677 510.88723 42 'point symmetry operation' ? ? 0.809017 0.110264 -0.57735 0.467086 0.475684 0.745356 0.356822 -0.872678 0.333333 118.73475 -87.86887 308.36711 43 'point symmetry operation' ? ? 0.5 -0.866025 0 0.645497 0.372678 0.666667 -0.57735 -0.333333 0.745356 0 -31.25609 11.93876 44 'point symmetry operation' ? ? -0.5 -0.645497 0.57735 0.645497 0.166667 0.745356 -0.57735 0.745356 0.333333 -323.70657 -34.94537 31.25609 45 'point symmetry operation' ? ? -0.809017 0.467086 0.356822 0.467086 0.14235 0.872678 0.356822 0.872678 -0.333333 -405.03348 -93.83825 339.6232 46 'point symmetry operation' ? ? -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -148.319 256.89604 0 47 'point symmetry operation' ? ? -1 0 0 0 -0.745356 0.666667 0 0.666667 0.745356 -296.638 -31.25609 11.93877 48 'point symmetry operation' ? ? -0.5 0.645497 -0.57735 -0.645497 0.166667 0.745356 0.57735 0.745356 0.333333 -121.25043 -226.42438 202.52012 49 'point symmetry operation' ? ? 0.309017 0.178411 -0.934172 -0.178411 0.975684 0.127322 0.934172 0.127322 0.333333 135.46405 -58.89288 308.36711 50 'point symmetry operation' ? ? 0.309017 -0.755761 -0.57735 0.755761 0.563661 -0.333333 0.57735 -0.333333 0.745356 118.73475 239.81557 183.20279 51 'point symmetry operation' ? ? -0.309017 -0.178411 0.934172 -0.755761 0.64235 -0.127322 -0.57735 -0.745356 -0.333333 -432.10205 -46.95411 339.6232 52 'point symmetry operation' ? ? -0.309017 0.755761 0.57735 0.178411 0.64235 -0.745356 -0.934172 -0.127322 -0.333333 -415.37275 259.1329 233.77621 53 'point symmetry operation' ? ? 0.5 0.866025 0 0.645497 -0.372678 -0.666667 -0.57735 0.333333 -0.745356 -148.319 393.99912 358.94053 54 'point symmetry operation' ? ? 1 0 0 0 -1 0 0 0 -1 0 171.26402 542.14332 55 'point symmetry operation' ? ? 0.5 -0.645497 0.57735 -0.866025 -0.372678 0.333333 0 -0.666667 -0.745356 -175.38757 -101.26006 530.20456 56 'point symmetry operation' ? ? 0.809017 0.110264 -0.57735 -0.467086 -0.475684 -0.745356 -0.356822 0.872678 -0.333333 118.73475 259.13289 233.77622 57 'point symmetry operation' ? ? 0.5 -0.866025 0 -0.645497 -0.372678 -0.666667 0.57735 0.333333 -0.745356 0 202.52012 530.20456 58 'point symmetry operation' ? ? -0.5 -0.645497 0.57735 -0.645497 -0.166667 -0.745356 0.57735 -0.745356 -0.333333 -323.70657 206.2094 510.88723 59 'point symmetry operation' ? ? -0.809017 0.467086 0.356822 -0.467086 -0.14235 -0.872678 -0.356822 -0.872678 0.333333 -405.03348 265.10228 202.52012 60 'point symmetry operation' ? ? 0 0.934172 -0.356822 -0.356822 -0.333333 -0.872678 -0.934172 0.127322 0.333333 -131.5897 297.8108 31.25609 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id D _struct_conn.ptnr1_label_atom_id N _struct_conn.ptnr1_label_comp_id GLY _struct_conn.ptnr1_label_seq_id 1 _struct_conn.ptnr1_auth_asym_id 4 _struct_conn.ptnr1_auth_comp_id GLY _struct_conn.ptnr1_auth_seq_id 2 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id MYR _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id 4 _struct_conn.ptnr2_auth_comp_id MYR _struct_conn.ptnr2_auth_seq_id 101 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.513 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C14 H28 O2' _chem_comp.formula_weight 228.371 _chem_comp.id MYR _chem_comp.mon_nstd_flag . _chem_comp.name 'MYRISTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MYR doub 235 n n C1 O2 MYR sing 236 n n C1 C2 MYR sing 237 n n O2 HO2 MYR sing 238 n n C2 C3 MYR sing 239 n n C2 H21 MYR sing 240 n n C2 H22 MYR sing 241 n n C3 C4 MYR sing 242 n n C3 H31 MYR sing 243 n n C3 H32 MYR sing 244 n n C4 C5 MYR sing 245 n n C4 H41 MYR sing 246 n n C4 H42 MYR sing 247 n n C5 C6 MYR sing 248 n n C5 H51 MYR sing 249 n n C5 H52 MYR sing 250 n n C6 C7 MYR sing 251 n n C6 H61 MYR sing 252 n n C6 H62 MYR sing 253 n n C7 C8 MYR sing 254 n n C7 H71 MYR sing 255 n n C7 H72 MYR sing 256 n n C8 C9 MYR sing 257 n n C8 H81 MYR sing 258 n n C8 H82 MYR sing 259 n n C9 C10 MYR sing 260 n n C9 H91 MYR sing 261 n n C9 H92 MYR sing 262 n n C10 C11 MYR sing 263 n n C10 H101 MYR sing 264 n n C10 H102 MYR sing 265 n n C11 C12 MYR sing 266 n n C11 H111 MYR sing 267 n n C11 H112 MYR sing 268 n n C12 C13 MYR sing 269 n n C12 H121 MYR sing 270 n n C12 H122 MYR sing 271 n n C13 C14 MYR sing 272 n n C13 H131 MYR sing 273 n n C13 H132 MYR sing 274 n n C14 H141 MYR sing 275 n n C14 H142 MYR sing 276 n n C14 H143 MYR sing 277 n n # _atom_sites.entry_id 4GB3 _atom_sites.fract_transf_matrix[1][1] 0.003371 _atom_sites.fract_transf_matrix[1][2] 0.001946 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003893 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00123 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 PLM 1 1 301 282 PLM PLM . F 6 MYR 4 1 101 1 MYR MYR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MYR . . . F 6 -90.061 121.042 348.598 1 90.52 ? C1 MYR 101 4 1 HETATM 2 O O1 MYR . . . F 6 -89.743 119.837 348.513 1 91.64 ? O1 MYR 101 4 1 HETATM 3 C C2 MYR . . . F 6 -91.269 121.142 349.431 1 91.89 ? C2 MYR 101 4 1 HETATM 4 C C3 MYR . . . F 6 -91.871 119.789 349.689 1 94.31 ? C3 MYR 101 4 1 HETATM 5 C C4 MYR . . . F 6 -91.713 119.206 351.051 1 97.76 ? C4 MYR 101 4 1 HETATM 6 C C5 MYR . . . F 6 -91.232 120.256 351.976 1 100.42 ? C5 MYR 101 4 1 HETATM 7 C C6 MYR . . . F 6 -91.142 119.843 353.394 1 103.59 ? C6 MYR 101 4 1 HETATM 8 C C7 MYR . . . F 6 -89.806 119.885 354.127 1 107.64 ? C7 MYR 101 4 1 HETATM 9 C C8 MYR . . . F 6 -89.96 118.926 355.262 1 111.19 ? C8 MYR 101 4 1 HETATM 10 C C9 MYR . . . F 6 -91.321 119.127 355.895 1 114.9 ? C9 MYR 101 4 1 HETATM 11 C C10 MYR . . . F 6 -91.728 118.114 356.876 1 117.95 ? C10 MYR 101 4 1 HETATM 12 C C11 MYR . . . F 6 -91.65 118.929 358.085 1 119.26 ? C11 MYR 101 4 1 HETATM 13 C C12 MYR . . . F 6 -90.234 118.848 358.478 1 120.26 ? C12 MYR 101 4 1 HETATM 14 C C13 MYR . . . F 6 -89.958 119.047 359.901 1 120.92 ? C13 MYR 101 4 1 HETATM 15 C C14 MYR . . . F 6 -88.547 119.301 359.74 1 120.33 ? C14 MYR 101 4 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 15 #