data_4GB9 # _model_server_result.job_id 8AJDxeGUGHAzrp2DmJkGMQ _model_server_result.datetime_utc '2024-11-22 04:18:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gb9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 4GB9 # _exptl.entry_id 4GB9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 533.668 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[1-({2-[2-(dimethylamino)-1H-benzimidazol-1-yl]-9-methyl-6-(morpholin-4-yl)-9H-purin-8-yl}methyl)piperidin-4-yl]propan-2-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98 _cell.angle_gamma 90 _cell.entry_id 4GB9 _cell.length_a 139.35 _cell.length_b 66.02 _cell.length_c 102.28 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GB9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H39 N9 O2' _chem_comp.formula_weight 533.668 _chem_comp.id 0WR _chem_comp.mon_nstd_flag . _chem_comp.name 2-[1-({2-[2-(dimethylamino)-1H-benzimidazol-1-yl]-9-methyl-6-(morpholin-4-yl)-9H-purin-8-yl}methyl)piperidin-4-yl]propan-2-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C27 N9 0WR sing 1 n n C28 N9 0WR sing 2 n n C1 C2 0WR sing 3 n n N9 C26 0WR sing 4 n n C8 C7 0WR sing 5 n n C8 C4 0WR sing 6 n n C7 N1 0WR sing 7 n n C2 C4 0WR sing 8 n n C2 C3 0WR sing 9 n n C2 O2 0WR sing 10 n n C26 N8 0WR doub 11 n y C26 N7 0WR sing 12 n y C4 C5 0WR sing 13 n n N8 C25 0WR sing 14 n y C13 N3 0WR sing 15 n n N1 C9 0WR sing 16 n n N1 C6 0WR sing 17 n n N7 C14 0WR sing 18 n n N7 C20 0WR sing 19 n y N4 C14 0WR doub 20 n y N4 C12 0WR sing 21 n y C25 C24 0WR doub 22 n y C25 C20 0WR sing 23 n y N3 C12 0WR sing 24 n y N3 C10 0WR sing 25 n y C14 N5 0WR sing 26 n y C12 C11 0WR doub 27 n y C10 C9 0WR sing 28 n n C10 N2 0WR doub 29 n y C5 C6 0WR sing 30 n n C24 C23 0WR sing 31 n y N5 C15 0WR doub 32 n y C20 C21 0WR doub 33 n y C11 N2 0WR sing 34 n y C11 C15 0WR sing 35 n y C15 N6 0WR sing 36 n n N6 C19 0WR sing 37 n n N6 C16 0WR sing 38 n n C23 C22 0WR doub 39 n y C19 C18 0WR sing 40 n n C21 C22 0WR sing 41 n y C16 C17 0WR sing 42 n n C18 O1 0WR sing 43 n n C17 O1 0WR sing 44 n n C1 H1 0WR sing 45 n n C1 H2 0WR sing 46 n n C1 H3 0WR sing 47 n n O2 H5 0WR sing 48 n n C3 H6 0WR sing 49 n n C3 H7 0WR sing 50 n n C3 H8 0WR sing 51 n n C4 H9 0WR sing 52 n n C5 H10 0WR sing 53 n n C5 H11 0WR sing 54 n n C6 H12 0WR sing 55 n n C6 H13 0WR sing 56 n n C7 H14 0WR sing 57 n n C7 H15 0WR sing 58 n n C8 H16 0WR sing 59 n n C8 H17 0WR sing 60 n n C9 H18 0WR sing 61 n n C9 H19 0WR sing 62 n n C13 H20 0WR sing 63 n n C13 H21 0WR sing 64 n n C13 H22 0WR sing 65 n n C16 H23 0WR sing 66 n n C16 H24 0WR sing 67 n n C17 H25 0WR sing 68 n n C17 H26 0WR sing 69 n n C18 H27 0WR sing 70 n n C18 H28 0WR sing 71 n n C19 H29 0WR sing 72 n n C19 H30 0WR sing 73 n n C21 H31 0WR sing 74 n n C22 H32 0WR sing 75 n n C23 H33 0WR sing 76 n n C24 H34 0WR sing 77 n n C27 H35 0WR sing 78 n n C27 H36 0WR sing 79 n n C27 H37 0WR sing 80 n n C28 H38 0WR sing 81 n n C28 H39 0WR sing 82 n n C28 H40 0WR sing 83 n n # _atom_sites.entry_id 4GB9 _atom_sites.fract_transf_matrix[1][1] 0.007176 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001009 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015147 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009873 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0WR A 1 1201 1 0WR ZZZ . C 3 HOH A 1 1301 1 HOH HOH . C 3 HOH A 2 1302 2 HOH HOH . C 3 HOH A 3 1303 3 HOH HOH . C 3 HOH A 4 1304 4 HOH HOH . C 3 HOH A 5 1305 5 HOH HOH . C 3 HOH A 6 1306 7 HOH HOH . C 3 HOH A 7 1307 8 HOH HOH . C 3 HOH A 8 1308 9 HOH HOH . C 3 HOH A 9 1309 10 HOH HOH . C 3 HOH A 10 1310 11 HOH HOH . C 3 HOH A 11 1311 13 HOH HOH . C 3 HOH A 12 1312 14 HOH HOH . C 3 HOH A 13 1313 15 HOH HOH . C 3 HOH A 14 1314 16 HOH HOH . C 3 HOH A 15 1315 17 HOH HOH . C 3 HOH A 16 1316 18 HOH HOH . C 3 HOH A 17 1317 19 HOH HOH . C 3 HOH A 18 1318 20 HOH HOH . C 3 HOH A 19 1319 21 HOH HOH . C 3 HOH A 20 1320 22 HOH HOH . C 3 HOH A 21 1321 23 HOH HOH . C 3 HOH A 22 1322 24 HOH HOH . C 3 HOH A 23 1323 25 HOH HOH . C 3 HOH A 24 1324 26 HOH HOH . C 3 HOH A 25 1325 27 HOH HOH . C 3 HOH A 26 1326 28 HOH HOH . C 3 HOH A 27 1327 29 HOH HOH . C 3 HOH A 28 1328 30 HOH HOH . C 3 HOH A 29 1329 33 HOH HOH . C 3 HOH A 30 1330 34 HOH HOH . C 3 HOH A 31 1331 35 HOH HOH . C 3 HOH A 32 1332 36 HOH HOH . C 3 HOH A 33 1333 37 HOH HOH . C 3 HOH A 34 1334 38 HOH HOH . C 3 HOH A 35 1335 39 HOH HOH . C 3 HOH A 36 1336 40 HOH HOH . C 3 HOH A 37 1337 41 HOH HOH . C 3 HOH A 38 1338 42 HOH HOH . C 3 HOH A 39 1339 43 HOH HOH . C 3 HOH A 40 1340 44 HOH HOH . C 3 HOH A 41 1341 45 HOH HOH . C 3 HOH A 42 1342 46 HOH HOH . C 3 HOH A 43 1343 47 HOH HOH . C 3 HOH A 44 1344 48 HOH HOH . C 3 HOH A 45 1345 49 HOH HOH . C 3 HOH A 46 1346 50 HOH HOH . C 3 HOH A 47 1347 51 HOH HOH . C 3 HOH A 48 1348 53 HOH HOH . C 3 HOH A 49 1349 54 HOH HOH . C 3 HOH A 50 1350 55 HOH HOH . C 3 HOH A 51 1351 56 HOH HOH . C 3 HOH A 52 1352 57 HOH HOH . C 3 HOH A 53 1353 58 HOH HOH . C 3 HOH A 54 1354 59 HOH HOH . C 3 HOH A 55 1355 60 HOH HOH . C 3 HOH A 56 1356 61 HOH HOH . C 3 HOH A 57 1357 62 HOH HOH . C 3 HOH A 58 1358 63 HOH HOH . C 3 HOH A 59 1359 64 HOH HOH . C 3 HOH A 60 1360 65 HOH HOH . C 3 HOH A 61 1361 66 HOH HOH . C 3 HOH A 62 1362 67 HOH HOH . C 3 HOH A 63 1363 68 HOH HOH . C 3 HOH A 64 1364 69 HOH HOH . C 3 HOH A 65 1365 70 HOH HOH . C 3 HOH A 66 1366 71 HOH HOH . C 3 HOH A 67 1367 72 HOH HOH . C 3 HOH A 68 1368 73 HOH HOH . C 3 HOH A 69 1369 74 HOH HOH . C 3 HOH A 70 1370 75 HOH HOH . C 3 HOH A 71 1371 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 0WR . . . B 2 9.055 -2.952 16.655 1 97.89 ? C1 0WR 1201 A 1 HETATM 2 N N1 0WR . . . B 2 13.426 -1.425 18.906 1 57.35 ? N1 0WR 1201 A 1 HETATM 3 O O1 0WR . . . B 2 15.103 -8.229 22.2 1 38.26 ? O1 0WR 1201 A 1 HETATM 4 C C2 0WR . . . B 2 9.31 -2.392 18.051 1 97.76 ? C2 0WR 1201 A 1 HETATM 5 N N2 0WR . . . B 2 15.475 -3.44 19.757 1 43.81 ? N2 0WR 1201 A 1 HETATM 6 O O2 0WR . . . B 2 9.242 -3.429 18.954 1 97.24 ? O2 0WR 1201 A 1 HETATM 7 C C3 0WR . . . B 2 8.231 -1.355 18.393 1 97.32 ? C3 0WR 1201 A 1 HETATM 8 N N3 0WR . . . B 2 17.07 -2.003 19.131 1 45.05 ? N3 0WR 1201 A 1 HETATM 9 C C4 0WR . . . B 2 10.707 -1.658 18.106 1 63.67 ? C4 0WR 1201 A 1 HETATM 10 N N4 0WR . . . B 2 18.975 -3.733 19.056 1 35.47 ? N4 0WR 1201 A 1 HETATM 11 C C5 0WR . . . B 2 11.057 -1.292 19.5 1 62.41 ? C5 0WR 1201 A 1 HETATM 12 N N5 0WR . . . B 2 18.346 -5.943 19.619 1 34.93 ? N5 0WR 1201 A 1 HETATM 13 C C6 0WR . . . B 2 12.395 -0.649 19.57 1 61.26 ? C6 0WR 1201 A 1 HETATM 14 N N6 0WR . . . B 2 16.148 -6.597 20.244 1 39.63 ? N6 0WR 1201 A 1 HETATM 15 C C7 0WR . . . B 2 13.068 -1.78 17.542 1 58.09 ? C7 0WR 1201 A 1 HETATM 16 C C8 0WR . . . B 2 11.726 -2.438 17.472 1 60.66 ? C8 0WR 1201 A 1 HETATM 17 C C9 0WR . . . B 2 14.754 -0.94 19.439 1 50.17 ? C9 0WR 1201 A 1 HETATM 18 C C10 0WR . . . B 2 15.767 -2.102 19.435 1 45.87 ? C10 0WR 1201 A 1 HETATM 19 C C11 0WR . . . B 2 16.672 -4.182 19.644 1 40.16 ? C11 0WR 1201 A 1 HETATM 20 C C12 0WR . . . B 2 17.666 -3.294 19.259 1 38.82 ? C12 0WR 1201 A 1 HETATM 21 C C13 0WR . . . B 2 17.824 -0.855 18.735 1 43.05 ? C13 0WR 1201 A 1 HETATM 22 C C14 0WR . . . B 2 19.279 -5.024 19.246 1 36.41 ? C14 0WR 1201 A 1 HETATM 23 C C15 0WR . . . B 2 17.055 -5.563 19.837 1 37.23 ? C15 0WR 1201 A 1 HETATM 24 C C16 0WR . . . B 2 14.82 -6.415 20.678 1 41.29 ? C16 0WR 1201 A 1 HETATM 25 C C17 0WR . . . B 2 14.595 -6.932 22.06 1 40.63 ? C17 0WR 1201 A 1 HETATM 26 C C18 0WR . . . B 2 16.482 -8.278 21.923 1 44.74 ? C18 0WR 1201 A 1 HETATM 27 C C19 0WR . . . B 2 16.728 -7.855 20.518 1 46.59 ? C19 0WR 1201 A 1 HETATM 28 N N7 0WR . . . B 2 20.597 -5.458 19.004 1 42.24 ? N7 0WR 1201 A 1 HETATM 29 C C20 0WR . . . B 2 21.225 -6.516 19.644 1 41.95 ? C20 0WR 1201 A 1 HETATM 30 C C21 0WR . . . B 2 20.84 -7.396 20.642 1 47.05 ? C21 0WR 1201 A 1 HETATM 31 C C22 0WR . . . B 2 21.726 -8.361 21.072 1 45.17 ? C22 0WR 1201 A 1 HETATM 32 C C23 0WR . . . B 2 22.992 -8.455 20.516 1 47.73 ? C23 0WR 1201 A 1 HETATM 33 C C24 0WR . . . B 2 23.391 -7.59 19.523 1 42.93 ? C24 0WR 1201 A 1 HETATM 34 C C25 0WR . . . B 2 22.507 -6.604 19.079 1 48.93 ? C25 0WR 1201 A 1 HETATM 35 N N8 0WR . . . B 2 22.601 -5.629 18.139 1 41.5 ? N8 0WR 1201 A 1 HETATM 36 C C26 0WR . . . B 2 21.483 -4.953 18.086 1 44.77 ? C26 0WR 1201 A 1 HETATM 37 N N9 0WR . . . B 2 21.24 -3.888 17.242 1 48.75 ? N9 0WR 1201 A 1 HETATM 38 C C27 0WR . . . B 2 20.15 -4.176 16.297 1 41.14 ? C27 0WR 1201 A 1 HETATM 39 C C28 0WR . . . B 2 22.457 -3.457 16.542 1 44.52 ? C28 0WR 1201 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 39 #