data_4GBP
#
_model_server_result.job_id            WnXHQLZVirxoOoNL6gfC2w 
_model_server_result.datetime_utc      '2024-11-26 22:29:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4gbp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    4GBP 
#
_exptl.entry_id    4GBP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              180.156 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            beta-D-galactopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4GBP 
_cell.length_a            52.189 
_cell.length_b            150.769 
_cell.length_c            79.397 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4GBP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
A,B,C,D,E,F 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 52.189 0 39.6985 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 149 A ASP 211 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc2 A OD1 ASP 151 A ASP 213 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
metalc ? metalc3 A OD2 ASP 151 A ASP 213 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc4 C MN MN . A MN 402 1_555 D O1A UDP . A UDP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
metalc ? metalc5 C MN MN . A MN 402 1_555 D O3B UDP . A UDP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
#
_chem_comp.formula           'C6 H12 O6' 
_chem_comp.formula_weight    180.156 
_chem_comp.id                GAL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              beta-D-galactopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     beta-D-galactose;D-galactose;galactose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 GAL sing 83 n n 
C1 O1 GAL sing 84 n n 
C1 O5 GAL sing 85 n n 
C1 H1 GAL sing 86 n n 
C2 C3 GAL sing 87 n n 
C2 O2 GAL sing 88 n n 
C2 H2 GAL sing 89 n n 
C3 C4 GAL sing 90 n n 
C3 O3 GAL sing 91 n n 
C3 H3 GAL sing 92 n n 
C4 C5 GAL sing 93 n n 
C4 O4 GAL sing 94 n n 
C4 H4 GAL sing 95 n n 
C5 C6 GAL sing 96 n n 
C5 O5 GAL sing 97 n n 
C5 H5 GAL sing 98 n n 
C6 O6 GAL sing 99 n n 
C6 H61 GAL sing 100 n n 
C6 H62 GAL sing 101 n n 
O1 HO1 GAL sing 102 n n 
O2 HO2 GAL sing 103 n n 
O3 HO3 GAL sing 104 n n 
O4 HO4 GAL sing 105 n n 
O6 HO6 GAL sing 106 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
GAL DGalpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
GAL b-D-galactopyranose 'COMMON NAME' GMML 1 
GAL b-D-Galp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
GAL Gal 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4GBP 
_atom_sites.fract_transf_matrix[1][1]    0.019161 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006633 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012595 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GAL A 1 401 2 GAL GAL . 
C 3 MN A 1 402 1 MN MN . 
D 4 UDP A 1 403 1 UDP UDP . 
E 2 GAL A 1 404 2 GAL GAL . 
F 5 HOH A 1 501 1 HOH HOH . 
F 5 HOH A 2 502 2 HOH HOH . 
F 5 HOH A 3 503 3 HOH HOH . 
F 5 HOH A 4 504 4 HOH HOH . 
F 5 HOH A 5 505 5 HOH HOH . 
F 5 HOH A 6 506 6 HOH HOH . 
F 5 HOH A 7 507 7 HOH HOH . 
F 5 HOH A 8 508 8 HOH HOH . 
F 5 HOH A 9 509 9 HOH HOH . 
F 5 HOH A 10 510 10 HOH HOH . 
F 5 HOH A 11 511 11 HOH HOH . 
F 5 HOH A 12 512 12 HOH HOH . 
F 5 HOH A 13 513 13 HOH HOH . 
F 5 HOH A 14 514 14 HOH HOH . 
F 5 HOH A 15 515 15 HOH HOH . 
F 5 HOH A 16 516 16 HOH HOH . 
F 5 HOH A 17 517 17 HOH HOH . 
F 5 HOH A 18 518 18 HOH HOH . 
F 5 HOH A 19 519 19 HOH HOH . 
F 5 HOH A 20 520 20 HOH HOH . 
F 5 HOH A 21 521 21 HOH HOH . 
F 5 HOH A 22 522 22 HOH HOH . 
F 5 HOH A 23 523 23 HOH HOH . 
F 5 HOH A 24 524 24 HOH HOH . 
F 5 HOH A 25 525 25 HOH HOH . 
F 5 HOH A 26 526 26 HOH HOH . 
F 5 HOH A 27 527 27 HOH HOH . 
F 5 HOH A 28 528 28 HOH HOH . 
F 5 HOH A 29 529 29 HOH HOH . 
F 5 HOH A 30 530 30 HOH HOH . 
F 5 HOH A 31 531 31 HOH HOH . 
F 5 HOH A 32 532 32 HOH HOH . 
F 5 HOH A 33 533 33 HOH HOH . 
F 5 HOH A 34 534 34 HOH HOH . 
F 5 HOH A 35 535 35 HOH HOH . 
F 5 HOH A 36 536 36 HOH HOH . 
F 5 HOH A 37 537 37 HOH HOH . 
F 5 HOH A 38 538 38 HOH HOH . 
F 5 HOH A 39 539 39 HOH HOH . 
F 5 HOH A 40 540 40 HOH HOH . 
F 5 HOH A 41 541 41 HOH HOH . 
F 5 HOH A 42 542 42 HOH HOH . 
F 5 HOH A 43 543 43 HOH HOH . 
F 5 HOH A 44 544 44 HOH HOH . 
F 5 HOH A 45 545 45 HOH HOH . 
F 5 HOH A 46 546 46 HOH HOH . 
F 5 HOH A 47 547 47 HOH HOH . 
F 5 HOH A 48 548 48 HOH HOH . 
F 5 HOH A 49 549 49 HOH HOH . 
F 5 HOH A 50 550 50 HOH HOH . 
F 5 HOH A 51 551 51 HOH HOH . 
F 5 HOH A 52 552 52 HOH HOH . 
F 5 HOH A 53 553 53 HOH HOH . 
F 5 HOH A 54 554 54 HOH HOH . 
F 5 HOH A 55 555 55 HOH HOH . 
F 5 HOH A 56 556 56 HOH HOH . 
F 5 HOH A 57 557 57 HOH HOH . 
F 5 HOH A 58 558 58 HOH HOH . 
F 5 HOH A 59 559 59 HOH HOH . 
F 5 HOH A 60 560 60 HOH HOH . 
F 5 HOH A 61 561 61 HOH HOH . 
F 5 HOH A 62 562 62 HOH HOH . 
F 5 HOH A 63 563 63 HOH HOH . 
F 5 HOH A 64 564 64 HOH HOH . 
F 5 HOH A 65 565 65 HOH HOH . 
F 5 HOH A 66 566 66 HOH HOH . 
F 5 HOH A 67 567 67 HOH HOH . 
F 5 HOH A 68 568 68 HOH HOH . 
F 5 HOH A 69 569 69 HOH HOH . 
F 5 HOH A 70 570 70 HOH HOH . 
F 5 HOH A 71 571 71 HOH HOH . 
F 5 HOH A 72 572 72 HOH HOH . 
F 5 HOH A 73 573 73 HOH HOH . 
F 5 HOH A 74 574 74 HOH HOH . 
F 5 HOH A 75 575 75 HOH HOH . 
F 5 HOH A 76 576 76 HOH HOH . 
F 5 HOH A 77 577 77 HOH HOH . 
F 5 HOH A 78 578 78 HOH HOH . 
F 5 HOH A 79 579 79 HOH HOH . 
F 5 HOH A 80 580 80 HOH HOH . 
F 5 HOH A 81 581 81 HOH HOH . 
F 5 HOH A 82 582 82 HOH HOH . 
F 5 HOH A 83 583 83 HOH HOH . 
F 5 HOH A 84 584 84 HOH HOH . 
F 5 HOH A 85 585 85 HOH HOH . 
F 5 HOH A 86 586 86 HOH HOH . 
F 5 HOH A 87 587 87 HOH HOH . 
F 5 HOH A 88 588 88 HOH HOH . 
F 5 HOH A 89 589 89 HOH HOH . 
F 5 HOH A 90 590 90 HOH HOH . 
F 5 HOH A 91 591 91 HOH HOH . 
F 5 HOH A 92 592 94 HOH HOH . 
F 5 HOH A 93 593 95 HOH HOH . 
F 5 HOH A 94 594 97 HOH HOH . 
F 5 HOH A 95 595 99 HOH HOH . 
F 5 HOH A 96 596 100 HOH HOH . 
F 5 HOH A 97 597 101 HOH HOH . 
F 5 HOH A 98 598 102 HOH HOH . 
F 5 HOH A 99 599 103 HOH HOH . 
F 5 HOH A 100 600 104 HOH HOH . 
F 5 HOH A 101 601 105 HOH HOH . 
F 5 HOH A 102 602 107 HOH HOH . 
F 5 HOH A 103 603 108 HOH HOH . 
F 5 HOH A 104 604 110 HOH HOH . 
F 5 HOH A 105 605 111 HOH HOH . 
F 5 HOH A 106 606 112 HOH HOH . 
F 5 HOH A 107 607 114 HOH HOH . 
F 5 HOH A 108 608 115 HOH HOH . 
F 5 HOH A 109 609 116 HOH HOH . 
F 5 HOH A 110 610 117 HOH HOH . 
F 5 HOH A 111 611 118 HOH HOH . 
F 5 HOH A 112 612 119 HOH HOH . 
F 5 HOH A 113 613 120 HOH HOH . 
F 5 HOH A 114 614 121 HOH HOH . 
F 5 HOH A 115 615 122 HOH HOH . 
F 5 HOH A 116 616 124 HOH HOH . 
F 5 HOH A 117 617 125 HOH HOH . 
F 5 HOH A 118 618 126 HOH HOH . 
F 5 HOH A 119 619 128 HOH HOH . 
F 5 HOH A 120 620 129 HOH HOH . 
F 5 HOH A 121 621 131 HOH HOH . 
F 5 HOH A 122 622 133 HOH HOH . 
F 5 HOH A 123 623 134 HOH HOH . 
F 5 HOH A 124 624 135 HOH HOH . 
F 5 HOH A 125 625 136 HOH HOH . 
F 5 HOH A 126 626 137 HOH HOH . 
F 5 HOH A 127 627 138 HOH HOH . 
F 5 HOH A 128 628 140 HOH HOH . 
F 5 HOH A 129 629 141 HOH HOH . 
F 5 HOH A 130 630 142 HOH HOH . 
F 5 HOH A 131 631 143 HOH HOH . 
F 5 HOH A 132 632 144 HOH HOH . 
F 5 HOH A 133 633 145 HOH HOH . 
F 5 HOH A 134 634 147 HOH HOH . 
F 5 HOH A 135 635 148 HOH HOH . 
F 5 HOH A 136 636 149 HOH HOH . 
F 5 HOH A 137 637 150 HOH HOH . 
F 5 HOH A 138 638 151 HOH HOH . 
F 5 HOH A 139 639 152 HOH HOH . 
F 5 HOH A 140 640 153 HOH HOH . 
F 5 HOH A 141 641 154 HOH HOH . 
F 5 HOH A 142 642 155 HOH HOH . 
F 5 HOH A 143 643 156 HOH HOH . 
F 5 HOH A 144 644 157 HOH HOH . 
F 5 HOH A 145 645 158 HOH HOH . 
F 5 HOH A 146 646 159 HOH HOH . 
F 5 HOH A 147 647 160 HOH HOH . 
F 5 HOH A 148 648 161 HOH HOH . 
F 5 HOH A 149 649 162 HOH HOH . 
F 5 HOH A 150 650 163 HOH HOH . 
F 5 HOH A 151 651 164 HOH HOH . 
F 5 HOH A 152 652 165 HOH HOH . 
F 5 HOH A 153 653 166 HOH HOH . 
F 5 HOH A 154 654 167 HOH HOH . 
F 5 HOH A 155 655 168 HOH HOH . 
F 5 HOH A 156 656 169 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GAL . . . B 2 17.08 16.912 -5.174 0.8 20.29 ? C1 GAL 401 A 1 
HETATM 2 C C2 GAL . . . B 2 16.651 17.839 -4.011 0.8 20.64 ? C2 GAL 401 A 1 
HETATM 3 C C3 GAL . . . B 2 16.263 19.21 -4.495 0.8 21 ? C3 GAL 401 A 1 
HETATM 4 C C4 GAL . . . B 2 17.301 19.787 -5.459 0.8 20.95 ? C4 GAL 401 A 1 
HETATM 5 C C5 GAL . . . B 2 17.707 18.709 -6.514 0.8 22.41 ? C5 GAL 401 A 1 
HETATM 6 C C6 GAL . . . B 2 18.816 19.06 -7.533 0.8 24.42 ? C6 GAL 401 A 1 
HETATM 7 O O1 GAL . . . B 2 17.596 15.67 -4.718 0.8 20.18 ? O1 GAL 401 A 1 
HETATM 8 O O2 GAL . . . B 2 15.559 17.218 -3.431 0.8 20.01 ? O2 GAL 401 A 1 
HETATM 9 O O3 GAL . . . B 2 16.094 20.1 -3.418 0.8 20.63 ? O3 GAL 401 A 1 
HETATM 10 O O4 GAL . . . B 2 18.384 20.217 -4.663 0.8 20.4 ? O4 GAL 401 A 1 
HETATM 11 O O5 GAL . . . B 2 18.171 17.547 -5.839 0.8 19.72 ? O5 GAL 401 A 1 
HETATM 12 O O6 GAL . . . B 2 18.824 18.065 -8.569 0.8 29.34 ? O6 GAL 401 A 1 
HETATM 13 H H1 GAL . . . B 2 16.234 16.752 -5.848 1 20.33 ? H1 GAL 401 A 1 
HETATM 14 H H2 GAL . . . B 2 17.475 17.925 -3.288 1 20.52 ? H2 GAL 401 A 1 
HETATM 15 H H3 GAL . . . B 2 15.313 19.114 -5.038 1 20.89 ? H3 GAL 401 A 1 
HETATM 16 H H4 GAL . . . B 2 16.852 20.64 -5.978 1 21.58 ? H4 GAL 401 A 1 
HETATM 17 H H5 GAL . . . B 2 16.807 18.464 -7.095 1 21.97 ? H5 GAL 401 A 1 
HETATM 18 H H61 GAL . . . B 2 18.629 20.046 -7.964 1 24.99 ? H61 GAL 401 A 1 
HETATM 19 H H62 GAL . . . B 2 19.783 19.082 -7.029 1 24.98 ? H62 GAL 401 A 1 
HETATM 20 H HO1 GAL . . . B 2 17.875 15.153 -5.543 0 26.37 ? HO1 GAL 401 A 1 
HETATM 21 H HO2 GAL . . . B 2 14.788 17.82 -3.49 0 25.24 ? HO2 GAL 401 A 1 
HETATM 22 H HO3 GAL . . . B 2 16.597 20.936 -3.572 0 28.03 ? HO3 GAL 401 A 1 
HETATM 23 H HO4 GAL . . . B 2 19.203 19.721 -4.928 0 26.89 ? HO4 GAL 401 A 1 
HETATM 24 H HO6 GAL . . . B 2 18.488 17.226 -8.224 1 27.58 ? HO6 GAL 401 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    48 
_model_server_stats.query_time_ms           630 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           24 
#