data_4GBP # _model_server_result.job_id ajPnrI5INb5tr8uoO0pl_g _model_server_result.datetime_utc '2024-11-07 10:11:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gbp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 4GBP # _exptl.entry_id 4GBP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-D-galactopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GBP _cell.length_a 52.189 _cell.length_b 150.769 _cell.length_c 79.397 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GBP _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 52.189 0 39.6985 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 149 A ASP 211 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc2 A OD1 ASP 151 A ASP 213 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc3 A OD2 ASP 151 A ASP 213 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc4 C MN MN . A MN 402 1_555 D O1A UDP . A UDP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc5 C MN MN . A MN 402 1_555 D O3B UDP . A UDP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id GAL _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-galactopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-galactose;D-galactose;galactose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GAL sing 83 n n C1 O1 GAL sing 84 n n C1 O5 GAL sing 85 n n C1 H1 GAL sing 86 n n C2 C3 GAL sing 87 n n C2 O2 GAL sing 88 n n C2 H2 GAL sing 89 n n C3 C4 GAL sing 90 n n C3 O3 GAL sing 91 n n C3 H3 GAL sing 92 n n C4 C5 GAL sing 93 n n C4 O4 GAL sing 94 n n C4 H4 GAL sing 95 n n C5 C6 GAL sing 96 n n C5 O5 GAL sing 97 n n C5 H5 GAL sing 98 n n C6 O6 GAL sing 99 n n C6 H61 GAL sing 100 n n C6 H62 GAL sing 101 n n O1 HO1 GAL sing 102 n n O2 HO2 GAL sing 103 n n O3 HO3 GAL sing 104 n n O4 HO4 GAL sing 105 n n O6 HO6 GAL sing 106 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version GAL DGalpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 GAL b-D-galactopyranose 'COMMON NAME' GMML 1 GAL b-D-Galp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 GAL Gal 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4GBP _atom_sites.fract_transf_matrix[1][1] 0.019161 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006633 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012595 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GAL A 1 401 2 GAL GAL . C 3 MN A 1 402 1 MN MN . D 4 UDP A 1 403 1 UDP UDP . E 2 GAL A 1 404 2 GAL GAL . F 5 HOH A 1 501 1 HOH HOH . F 5 HOH A 2 502 2 HOH HOH . F 5 HOH A 3 503 3 HOH HOH . F 5 HOH A 4 504 4 HOH HOH . F 5 HOH A 5 505 5 HOH HOH . F 5 HOH A 6 506 6 HOH HOH . F 5 HOH A 7 507 7 HOH HOH . F 5 HOH A 8 508 8 HOH HOH . F 5 HOH A 9 509 9 HOH HOH . F 5 HOH A 10 510 10 HOH HOH . F 5 HOH A 11 511 11 HOH HOH . F 5 HOH A 12 512 12 HOH HOH . F 5 HOH A 13 513 13 HOH HOH . F 5 HOH A 14 514 14 HOH HOH . F 5 HOH A 15 515 15 HOH HOH . F 5 HOH A 16 516 16 HOH HOH . F 5 HOH A 17 517 17 HOH HOH . F 5 HOH A 18 518 18 HOH HOH . F 5 HOH A 19 519 19 HOH HOH . F 5 HOH A 20 520 20 HOH HOH . F 5 HOH A 21 521 21 HOH HOH . F 5 HOH A 22 522 22 HOH HOH . F 5 HOH A 23 523 23 HOH HOH . F 5 HOH A 24 524 24 HOH HOH . F 5 HOH A 25 525 25 HOH HOH . F 5 HOH A 26 526 26 HOH HOH . F 5 HOH A 27 527 27 HOH HOH . F 5 HOH A 28 528 28 HOH HOH . F 5 HOH A 29 529 29 HOH HOH . F 5 HOH A 30 530 30 HOH HOH . F 5 HOH A 31 531 31 HOH HOH . F 5 HOH A 32 532 32 HOH HOH . F 5 HOH A 33 533 33 HOH HOH . F 5 HOH A 34 534 34 HOH HOH . F 5 HOH A 35 535 35 HOH HOH . F 5 HOH A 36 536 36 HOH HOH . F 5 HOH A 37 537 37 HOH HOH . F 5 HOH A 38 538 38 HOH HOH . F 5 HOH A 39 539 39 HOH HOH . F 5 HOH A 40 540 40 HOH HOH . F 5 HOH A 41 541 41 HOH HOH . F 5 HOH A 42 542 42 HOH HOH . F 5 HOH A 43 543 43 HOH HOH . F 5 HOH A 44 544 44 HOH HOH . F 5 HOH A 45 545 45 HOH HOH . F 5 HOH A 46 546 46 HOH HOH . F 5 HOH A 47 547 47 HOH HOH . F 5 HOH A 48 548 48 HOH HOH . F 5 HOH A 49 549 49 HOH HOH . F 5 HOH A 50 550 50 HOH HOH . F 5 HOH A 51 551 51 HOH HOH . F 5 HOH A 52 552 52 HOH HOH . F 5 HOH A 53 553 53 HOH HOH . F 5 HOH A 54 554 54 HOH HOH . F 5 HOH A 55 555 55 HOH HOH . F 5 HOH A 56 556 56 HOH HOH . F 5 HOH A 57 557 57 HOH HOH . F 5 HOH A 58 558 58 HOH HOH . F 5 HOH A 59 559 59 HOH HOH . F 5 HOH A 60 560 60 HOH HOH . F 5 HOH A 61 561 61 HOH HOH . F 5 HOH A 62 562 62 HOH HOH . F 5 HOH A 63 563 63 HOH HOH . F 5 HOH A 64 564 64 HOH HOH . F 5 HOH A 65 565 65 HOH HOH . F 5 HOH A 66 566 66 HOH HOH . F 5 HOH A 67 567 67 HOH HOH . F 5 HOH A 68 568 68 HOH HOH . F 5 HOH A 69 569 69 HOH HOH . F 5 HOH A 70 570 70 HOH HOH . F 5 HOH A 71 571 71 HOH HOH . F 5 HOH A 72 572 72 HOH HOH . F 5 HOH A 73 573 73 HOH HOH . F 5 HOH A 74 574 74 HOH HOH . F 5 HOH A 75 575 75 HOH HOH . F 5 HOH A 76 576 76 HOH HOH . F 5 HOH A 77 577 77 HOH HOH . F 5 HOH A 78 578 78 HOH HOH . F 5 HOH A 79 579 79 HOH HOH . F 5 HOH A 80 580 80 HOH HOH . F 5 HOH A 81 581 81 HOH HOH . F 5 HOH A 82 582 82 HOH HOH . F 5 HOH A 83 583 83 HOH HOH . F 5 HOH A 84 584 84 HOH HOH . F 5 HOH A 85 585 85 HOH HOH . F 5 HOH A 86 586 86 HOH HOH . F 5 HOH A 87 587 87 HOH HOH . F 5 HOH A 88 588 88 HOH HOH . F 5 HOH A 89 589 89 HOH HOH . F 5 HOH A 90 590 90 HOH HOH . F 5 HOH A 91 591 91 HOH HOH . F 5 HOH A 92 592 94 HOH HOH . F 5 HOH A 93 593 95 HOH HOH . F 5 HOH A 94 594 97 HOH HOH . F 5 HOH A 95 595 99 HOH HOH . F 5 HOH A 96 596 100 HOH HOH . F 5 HOH A 97 597 101 HOH HOH . F 5 HOH A 98 598 102 HOH HOH . F 5 HOH A 99 599 103 HOH HOH . F 5 HOH A 100 600 104 HOH HOH . F 5 HOH A 101 601 105 HOH HOH . F 5 HOH A 102 602 107 HOH HOH . F 5 HOH A 103 603 108 HOH HOH . F 5 HOH A 104 604 110 HOH HOH . F 5 HOH A 105 605 111 HOH HOH . F 5 HOH A 106 606 112 HOH HOH . F 5 HOH A 107 607 114 HOH HOH . F 5 HOH A 108 608 115 HOH HOH . F 5 HOH A 109 609 116 HOH HOH . F 5 HOH A 110 610 117 HOH HOH . F 5 HOH A 111 611 118 HOH HOH . F 5 HOH A 112 612 119 HOH HOH . F 5 HOH A 113 613 120 HOH HOH . F 5 HOH A 114 614 121 HOH HOH . F 5 HOH A 115 615 122 HOH HOH . F 5 HOH A 116 616 124 HOH HOH . F 5 HOH A 117 617 125 HOH HOH . F 5 HOH A 118 618 126 HOH HOH . F 5 HOH A 119 619 128 HOH HOH . F 5 HOH A 120 620 129 HOH HOH . F 5 HOH A 121 621 131 HOH HOH . F 5 HOH A 122 622 133 HOH HOH . F 5 HOH A 123 623 134 HOH HOH . F 5 HOH A 124 624 135 HOH HOH . F 5 HOH A 125 625 136 HOH HOH . F 5 HOH A 126 626 137 HOH HOH . F 5 HOH A 127 627 138 HOH HOH . F 5 HOH A 128 628 140 HOH HOH . F 5 HOH A 129 629 141 HOH HOH . F 5 HOH A 130 630 142 HOH HOH . F 5 HOH A 131 631 143 HOH HOH . F 5 HOH A 132 632 144 HOH HOH . F 5 HOH A 133 633 145 HOH HOH . F 5 HOH A 134 634 147 HOH HOH . F 5 HOH A 135 635 148 HOH HOH . F 5 HOH A 136 636 149 HOH HOH . F 5 HOH A 137 637 150 HOH HOH . F 5 HOH A 138 638 151 HOH HOH . F 5 HOH A 139 639 152 HOH HOH . F 5 HOH A 140 640 153 HOH HOH . F 5 HOH A 141 641 154 HOH HOH . F 5 HOH A 142 642 155 HOH HOH . F 5 HOH A 143 643 156 HOH HOH . F 5 HOH A 144 644 157 HOH HOH . F 5 HOH A 145 645 158 HOH HOH . F 5 HOH A 146 646 159 HOH HOH . F 5 HOH A 147 647 160 HOH HOH . F 5 HOH A 148 648 161 HOH HOH . F 5 HOH A 149 649 162 HOH HOH . F 5 HOH A 150 650 163 HOH HOH . F 5 HOH A 151 651 164 HOH HOH . F 5 HOH A 152 652 165 HOH HOH . F 5 HOH A 153 653 166 HOH HOH . F 5 HOH A 154 654 167 HOH HOH . F 5 HOH A 155 655 168 HOH HOH . F 5 HOH A 156 656 169 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GAL . . . E 2 18.938 10.944 -6.893 0.8 23.91 ? C1 GAL 404 A 1 HETATM 2 C C2 GAL . . . E 2 17.899 12.039 -6.633 0.8 23.83 ? C2 GAL 404 A 1 HETATM 3 C C3 GAL . . . E 2 18.404 13.331 -7.174 0.8 22.13 ? C3 GAL 404 A 1 HETATM 4 C C4 GAL . . . E 2 19.795 13.632 -6.597 0.8 21.72 ? C4 GAL 404 A 1 HETATM 5 C C5 GAL . . . E 2 20.754 12.461 -6.967 0.8 22.31 ? C5 GAL 404 A 1 HETATM 6 C C6 GAL . . . E 2 22.186 12.613 -6.431 0.8 20.95 ? C6 GAL 404 A 1 HETATM 7 O O1 GAL . . . E 2 18.536 9.871 -6.12 0.8 26.23 ? O1 GAL 404 A 1 HETATM 8 O O2 GAL . . . E 2 16.679 11.743 -7.295 0.8 23.2 ? O2 GAL 404 A 1 HETATM 9 O O3 GAL . . . E 2 17.446 14.295 -6.824 0.8 22.86 ? O3 GAL 404 A 1 HETATM 10 O O4 GAL . . . E 2 19.753 13.832 -5.172 0.8 19.52 ? O4 GAL 404 A 1 HETATM 11 O O5 GAL . . . E 2 20.277 11.233 -6.453 0.8 22.47 ? O5 GAL 404 A 1 HETATM 12 O O6 GAL . . . E 2 22.889 11.407 -6.674 0.8 22.58 ? O6 GAL 404 A 1 HETATM 13 H H1 GAL . . . E 2 18.929 10.675 -7.959 0.8 24.03 ? H1 GAL 404 A 1 HETATM 14 H H2 GAL . . . E 2 17.722 12.135 -5.554 0.8 23.37 ? H2 GAL 404 A 1 HETATM 15 H H3 GAL . . . E 2 18.476 13.25 -8.267 0.8 22.65 ? H3 GAL 404 A 1 HETATM 16 H H4 GAL . . . E 2 20.173 14.546 -7.072 0.8 21.66 ? H4 GAL 404 A 1 HETATM 17 H H5 GAL . . . E 2 20.794 12.387 -8.058 0.8 22.54 ? H5 GAL 404 A 1 HETATM 18 H H61 GAL . . . E 2 22.686 13.448 -6.92 0.8 22.37 ? H61 GAL 404 A 1 HETATM 19 H H62 GAL . . . E 2 22.163 12.812 -5.358 0.8 21.79 ? H62 GAL 404 A 1 HETATM 20 H HO1 GAL . . . E 2 19.121 9.17 -6.375 0 24.39 ? HO1 GAL 404 A 1 HETATM 21 H HO2 GAL . . . E 2 16.522 12.458 -7.955 0 22.77 ? HO2 GAL 404 A 1 HETATM 22 H HO3 GAL . . . E 2 17.929 15.068 -6.369 0 22.23 ? HO3 GAL 404 A 1 HETATM 23 H HO4 GAL . . . E 2 20.314 13.137 -4.763 0 18.96 ? HO4 GAL 404 A 1 HETATM 24 H HO6 GAL . . . E 2 22.278 10.658 -6.674 0.8 22.5 ? HO6 GAL 404 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #