data_4GBV # _model_server_result.job_id gSeN0ccOxe-Tln-5SWLxEg _model_server_result.datetime_utc '2024-10-20 19:27:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gbv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 4GBV # _exptl.entry_id 4GBV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GBV _cell.length_a 53.69 _cell.length_b 82.506 _cell.length_c 166.284 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GBV _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 53.69 82.506 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 53.69 0 0 4 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 82.506 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 97 A GLU 97 1_555 D MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc2 A OD2 ASP 118 A ASP 118 1_555 D MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc3 A OD1 ASP 118 A ASP 118 1_555 E MN MN . A MN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc4 A O LEU 120 A LEU 120 1_555 D MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc5 A OD1 ASP 121 A ASP 121 1_555 E MN MN . A MN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc6 A OE1 GLU 280 A GLU 280 1_555 E MN MN . A MN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc7 C O2 PO4 . A PO4 402 1_555 D MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc8 C O2 PO4 . A PO4 402 1_555 E MN MN . A MN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc9 C O3 PO4 . A PO4 402 1_555 E MN MN . A MN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4GBV _atom_sites.fract_transf_matrix[1][1] 0.018626 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01212 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006014 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 F6P A 1 401 339 F6P F6P . C 3 PO4 A 1 402 434 PO4 PO4 . D 4 MN A 1 403 340 MN MN . E 4 MN A 1 404 341 MN MN . F 5 AMP A 1 405 435 AMP AMP . G 6 HOH A 1 501 501 HOH HOH . G 6 HOH A 2 502 502 HOH HOH . G 6 HOH A 3 503 503 HOH HOH . G 6 HOH A 4 504 504 HOH HOH . G 6 HOH A 5 505 505 HOH HOH . G 6 HOH A 6 506 506 HOH HOH . G 6 HOH A 7 507 507 HOH HOH . G 6 HOH A 8 508 508 HOH HOH . G 6 HOH A 9 509 509 HOH HOH . G 6 HOH A 10 510 510 HOH HOH . G 6 HOH A 11 511 511 HOH HOH . G 6 HOH A 12 512 512 HOH HOH . G 6 HOH A 13 513 513 HOH HOH . G 6 HOH A 14 514 514 HOH HOH . G 6 HOH A 15 515 515 HOH HOH . G 6 HOH A 16 516 516 HOH HOH . G 6 HOH A 17 517 517 HOH HOH . G 6 HOH A 18 518 518 HOH HOH . G 6 HOH A 19 519 519 HOH HOH . G 6 HOH A 20 520 520 HOH HOH . G 6 HOH A 21 521 521 HOH HOH . G 6 HOH A 22 522 522 HOH HOH . G 6 HOH A 23 523 523 HOH HOH . G 6 HOH A 24 524 524 HOH HOH . G 6 HOH A 25 525 525 HOH HOH . G 6 HOH A 26 526 526 HOH HOH . G 6 HOH A 27 527 527 HOH HOH . G 6 HOH A 28 528 528 HOH HOH . G 6 HOH A 29 529 529 HOH HOH . G 6 HOH A 30 530 530 HOH HOH . G 6 HOH A 31 531 531 HOH HOH . G 6 HOH A 32 532 532 HOH HOH . G 6 HOH A 33 533 533 HOH HOH . G 6 HOH A 34 534 534 HOH HOH . G 6 HOH A 35 535 535 HOH HOH . G 6 HOH A 36 536 536 HOH HOH . G 6 HOH A 37 537 537 HOH HOH . G 6 HOH A 38 538 538 HOH HOH . G 6 HOH A 39 539 539 HOH HOH . G 6 HOH A 40 540 540 HOH HOH . G 6 HOH A 41 541 541 HOH HOH . G 6 HOH A 42 542 542 HOH HOH . G 6 HOH A 43 543 543 HOH HOH . G 6 HOH A 44 544 544 HOH HOH . G 6 HOH A 45 545 545 HOH HOH . G 6 HOH A 46 546 546 HOH HOH . G 6 HOH A 47 547 547 HOH HOH . G 6 HOH A 48 548 548 HOH HOH . G 6 HOH A 49 549 549 HOH HOH . G 6 HOH A 50 550 550 HOH HOH . G 6 HOH A 51 551 551 HOH HOH . G 6 HOH A 52 552 552 HOH HOH . G 6 HOH A 53 553 553 HOH HOH . G 6 HOH A 54 554 554 HOH HOH . G 6 HOH A 55 555 555 HOH HOH . G 6 HOH A 56 556 556 HOH HOH . G 6 HOH A 57 557 557 HOH HOH . G 6 HOH A 58 558 558 HOH HOH . G 6 HOH A 59 559 559 HOH HOH . G 6 HOH A 60 560 560 HOH HOH . G 6 HOH A 61 561 561 HOH HOH . G 6 HOH A 62 562 562 HOH HOH . G 6 HOH A 63 563 563 HOH HOH . G 6 HOH A 64 564 564 HOH HOH . G 6 HOH A 65 565 565 HOH HOH . G 6 HOH A 66 566 566 HOH HOH . G 6 HOH A 67 567 567 HOH HOH . G 6 HOH A 68 568 568 HOH HOH . G 6 HOH A 69 569 569 HOH HOH . G 6 HOH A 70 570 570 HOH HOH . G 6 HOH A 71 571 571 HOH HOH . G 6 HOH A 72 572 572 HOH HOH . G 6 HOH A 73 573 573 HOH HOH . G 6 HOH A 74 574 574 HOH HOH . G 6 HOH A 75 575 575 HOH HOH . G 6 HOH A 76 576 576 HOH HOH . G 6 HOH A 77 577 577 HOH HOH . G 6 HOH A 78 578 578 HOH HOH . G 6 HOH A 79 579 579 HOH HOH . G 6 HOH A 80 580 580 HOH HOH . G 6 HOH A 81 581 581 HOH HOH . G 6 HOH A 82 582 582 HOH HOH . G 6 HOH A 83 583 583 HOH HOH . G 6 HOH A 84 584 584 HOH HOH . G 6 HOH A 85 585 585 HOH HOH . G 6 HOH A 86 586 586 HOH HOH . G 6 HOH A 87 587 587 HOH HOH . G 6 HOH A 88 588 588 HOH HOH . G 6 HOH A 89 589 589 HOH HOH . G 6 HOH A 90 590 590 HOH HOH . G 6 HOH A 91 591 591 HOH HOH . G 6 HOH A 92 592 592 HOH HOH . G 6 HOH A 93 593 593 HOH HOH . G 6 HOH A 94 594 594 HOH HOH . G 6 HOH A 95 595 595 HOH HOH . G 6 HOH A 96 596 596 HOH HOH . G 6 HOH A 97 597 597 HOH HOH . G 6 HOH A 98 598 598 HOH HOH . G 6 HOH A 99 599 599 HOH HOH . G 6 HOH A 100 600 600 HOH HOH . G 6 HOH A 101 601 601 HOH HOH . G 6 HOH A 102 602 602 HOH HOH . G 6 HOH A 103 603 603 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 14.31 _atom_site.Cartn_y 30.469 _atom_site.Cartn_z 20.547 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.58 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #