data_4GBX
#
_model_server_result.job_id            r-jdVRnPi9zpvYDO1eKrQA 
_model_server_result.datetime_utc      '2024-10-12 10:23:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4gbx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":301}' 
#
_entry.id    4GBX 
#
_exptl.entry_id    4GBX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          6 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4GBX 
_cell.length_a            66.167 
_cell.length_b            126.032 
_cell.length_c            143.107 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4GBX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,F,I,J 1 1 
C,D,E,G,H,K,L,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 F N N 
? 6 G N N 
? 6 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 24 C CYS 24 1_555 A SG CYS 79 C CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 A SG CYS 121 C CYS 121 1_555 A SG CYS 176 C CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf3 B SG CYS 11 D CYS 11 1_555 B SG CYS 79 D CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 B SG CYS 25 D CYS 25 1_555 B SG CYS 35 D CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
disulf ? disulf5 B SG CYS 117 D CYS 117 1_555 B SG CYS 174 D CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf6 C SG CYS 65 A CYS 65 1_555 E SG CYS 5 E CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
disulf ? disulf7 C SG CYS 107 A CYS 107 1_555 C SG CYS 163 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf8 D SG CYS 21 B CYS 15 1_555 D SG CYS 85 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf9 D SG CYS 123 B CYS 117 1_555 D SG CYS 179 B CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
covale ? covale1 A ND2 ASN 15 C ASN 15 1_555 F C1 NAG . C NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.503 ? 
covale ? covale2 C ND2 ASN 78 A ASN 78 1_555 H C1 NAG . A NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.496 ? 
covale ? covale3 C ND2 ASN 118 A ASN 118 1_555 G C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.543 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4GBX 
_atom_sites.fract_transf_matrix[1][1]    0.015113 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007934 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006988 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 NAG C 1 301 511 NAG NAG . 
G 6 NAG A 1 201 511 NAG NAG . 
H 6 NAG A 1 202 512 NAG NAG . 
I 7 HOH C 1 401 15 HOH HOH . 
I 7 HOH C 2 402 22 HOH HOH . 
I 7 HOH C 3 403 32 HOH HOH . 
I 7 HOH C 4 404 47 HOH HOH . 
I 7 HOH C 5 405 51 HOH HOH . 
I 7 HOH C 6 406 52 HOH HOH . 
I 7 HOH C 7 407 56 HOH HOH . 
I 7 HOH C 8 408 57 HOH HOH . 
I 7 HOH C 9 409 61 HOH HOH . 
I 7 HOH C 10 410 63 HOH HOH . 
I 7 HOH C 11 411 68 HOH HOH . 
J 7 HOH D 1 201 7 HOH HOH . 
J 7 HOH D 2 202 24 HOH HOH . 
J 7 HOH D 3 203 28 HOH HOH . 
J 7 HOH D 4 204 44 HOH HOH . 
J 7 HOH D 5 205 54 HOH HOH . 
K 7 HOH A 1 301 8 HOH HOH . 
K 7 HOH A 2 302 9 HOH HOH . 
K 7 HOH A 3 303 10 HOH HOH . 
K 7 HOH A 4 304 16 HOH HOH . 
K 7 HOH A 5 305 20 HOH HOH . 
K 7 HOH A 6 306 21 HOH HOH . 
K 7 HOH A 7 307 25 HOH HOH . 
K 7 HOH A 8 308 26 HOH HOH . 
K 7 HOH A 9 309 31 HOH HOH . 
K 7 HOH A 10 310 34 HOH HOH . 
K 7 HOH A 11 311 35 HOH HOH . 
K 7 HOH A 12 312 37 HOH HOH . 
K 7 HOH A 13 313 40 HOH HOH . 
K 7 HOH A 14 314 46 HOH HOH . 
K 7 HOH A 15 315 66 HOH HOH . 
K 7 HOH A 16 316 72 HOH HOH . 
K 7 HOH A 17 317 75 HOH HOH . 
K 7 HOH A 18 318 77 HOH HOH . 
K 7 HOH A 19 319 78 HOH HOH . 
K 7 HOH A 20 320 83 HOH HOH . 
K 7 HOH A 21 321 91 HOH HOH . 
L 7 HOH B 1 301 2 HOH HOH . 
L 7 HOH B 2 302 4 HOH HOH . 
L 7 HOH B 3 303 11 HOH HOH . 
L 7 HOH B 4 304 12 HOH HOH . 
L 7 HOH B 5 305 14 HOH HOH . 
L 7 HOH B 6 306 17 HOH HOH . 
L 7 HOH B 7 307 19 HOH HOH . 
L 7 HOH B 8 308 27 HOH HOH . 
L 7 HOH B 9 309 30 HOH HOH . 
L 7 HOH B 10 310 38 HOH HOH . 
L 7 HOH B 11 311 41 HOH HOH . 
L 7 HOH B 12 312 64 HOH HOH . 
L 7 HOH B 13 313 73 HOH HOH . 
L 7 HOH B 14 314 79 HOH HOH . 
L 7 HOH B 15 315 87 HOH HOH . 
L 7 HOH B 16 316 88 HOH HOH . 
L 7 HOH B 17 317 89 HOH HOH . 
M 7 HOH E 1 101 58 HOH HOH . 
M 7 HOH E 2 102 81 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . F 6 -39.46 20.263 18.147 1 127.53 ? C1 NAG 301 C 1 
HETATM 2 C C2 NAG . . . F 6 -37.963 19.941 18.08 1 131.02 ? C2 NAG 301 C 1 
HETATM 3 C C3 NAG . . . F 6 -37.254 20.722 16.977 1 136.19 ? C3 NAG 301 C 1 
HETATM 4 C C4 NAG . . . F 6 -37.981 20.533 15.652 1 140.55 ? C4 NAG 301 C 1 
HETATM 5 C C5 NAG . . . F 6 -39.436 20.944 15.813 1 139.14 ? C5 NAG 301 C 1 
HETATM 6 C C6 NAG . . . F 6 -40.159 20.698 14.494 1 138.64 ? C6 NAG 301 C 1 
HETATM 7 C C7 NAG . . . F 6 -36.533 19.29 19.944 1 123.17 ? C7 NAG 301 C 1 
HETATM 8 C C8 NAG . . . F 6 -35.932 19.67 21.268 1 119.55 ? C8 NAG 301 C 1 
HETATM 9 N N2 NAG . . . F 6 -37.321 20.192 19.36 1 131.76 ? N2 NAG 301 C 1 
HETATM 10 O O3 NAG . . . F 6 -35.92 20.277 16.867 1 134.24 ? O3 NAG 301 C 1 
HETATM 11 O O4 NAG . . . F 6 -37.391 21.299 14.619 1 149.97 ? O4 NAG 301 C 1 
HETATM 12 O O5 NAG . . . F 6 -40.076 20.237 16.867 1 133.37 ? O5 NAG 301 C 1 
HETATM 13 O O6 NAG . . . F 6 -41.527 20.992 14.642 1 145.31 ? O6 NAG 301 C 1 
HETATM 14 O O7 NAG . . . F 6 -36.292 18.193 19.444 1 119.71 ? O7 NAG 301 C 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#