data_4GBZ
#
_model_server_result.job_id            W17wucc8-uJbIHVVQ5uhWQ 
_model_server_result.datetime_utc      '2025-07-07 23:25:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4gbz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":505}' 
#
_entry.id    4GBZ 
#
_exptl.entry_id    4GBZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              306.395 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'nonyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4GBZ 
_cell.length_a            95.036 
_cell.length_b            95.036 
_cell.length_c            168.566 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4GBZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C15 H30 O6' 
_chem_comp.formula_weight    306.395 
_chem_comp.id                BNG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'nonyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-NONYLGLUCOSIDE;nonyl beta-D-glucoside;nonyl D-glucoside;nonyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BNG sing 94 n n 
C1 O1 BNG sing 95 n n 
C1 O5 BNG sing 96 n n 
C1 H1 BNG sing 97 n n 
C2 C3 BNG sing 98 n n 
C2 O2 BNG sing 99 n n 
C2 H2 BNG sing 100 n n 
C3 C4 BNG sing 101 n n 
C3 O3 BNG sing 102 n n 
C3 H3 BNG sing 103 n n 
C4 C5 BNG sing 104 n n 
C4 O4 BNG sing 105 n n 
C4 H4 BNG sing 106 n n 
C5 C6 BNG sing 107 n n 
C5 O5 BNG sing 108 n n 
C5 H5 BNG sing 109 n n 
C6 O6 BNG sing 110 n n 
C6 H61 BNG sing 111 n n 
C6 H62 BNG sing 112 n n 
C1' C2' BNG sing 113 n n 
C1' O1 BNG sing 114 n n 
C1' "H1'1" BNG sing 115 n n 
C1' "H1'2" BNG sing 116 n n 
C2' C3' BNG sing 117 n n 
C2' "H2'1" BNG sing 118 n n 
C2' "H2'2" BNG sing 119 n n 
C3' C4' BNG sing 120 n n 
C3' "H3'1" BNG sing 121 n n 
C3' "H3'2" BNG sing 122 n n 
C4' C5' BNG sing 123 n n 
C4' "H4'1" BNG sing 124 n n 
C4' "H4'2" BNG sing 125 n n 
C5' C6' BNG sing 126 n n 
C5' "H5'1" BNG sing 127 n n 
C5' "H5'2" BNG sing 128 n n 
C6' C7' BNG sing 129 n n 
C6' "H6'1" BNG sing 130 n n 
C6' "H6'2" BNG sing 131 n n 
C7' C8' BNG sing 132 n n 
C7' "H7'1" BNG sing 133 n n 
C7' "H7'2" BNG sing 134 n n 
C8' C9' BNG sing 135 n n 
C8' "H8'1" BNG sing 136 n n 
C8' "H8'2" BNG sing 137 n n 
C9' "H9'1" BNG sing 138 n n 
C9' "H9'2" BNG sing 139 n n 
C9' "H9'3" BNG sing 140 n n 
O2 HO2 BNG sing 141 n n 
O3 HO3 BNG sing 142 n n 
O4 HO4 BNG sing 143 n n 
O6 HO6 BNG sing 144 n n 
#
_pdbx_chem_comp_identifier.comp_id            BNG 
_pdbx_chem_comp_identifier.identifier         b-nonylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     4GBZ 
_atom_sites.fract_transf_matrix[1][1]    0.010522 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010522 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005932 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BGC A 1 501 1 BGC BGC . 
C 3 BNG A 1 502 1 BNG BNG . 
D 3 BNG A 1 503 2 BNG BNG . 
E 3 BNG A 1 504 3 BNG BNG . 
F 3 BNG A 1 505 4 BNG BNG . 
G 4 HOH A 1 601 1 HOH HOH . 
G 4 HOH A 2 602 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BNG . . . F 3 -7.769 2.753 6.301 1 122.49 ? C1 BNG 505 A 1 
HETATM 2 C C2 BNG . . . F 3 -7.362 2.155 4.959 1 121.98 ? C2 BNG 505 A 1 
HETATM 3 C C3 BNG . . . F 3 -5.957 1.569 5.028 1 122.94 ? C3 BNG 505 A 1 
HETATM 4 C C4 BNG . . . F 3 -4.98 2.565 5.638 1 122.01 ? C4 BNG 505 A 1 
HETATM 5 C C5 BNG . . . F 3 -5.529 3.134 6.941 1 122.54 ? C5 BNG 505 A 1 
HETATM 6 C C6 BNG . . . F 3 -4.585 4.183 7.519 1 121.77 ? C6 BNG 505 A 1 
HETATM 7 C C1' BNG . . . F 3 -9.233 4.403 7.147 1 121.26 ? C1' BNG 505 A 1 
HETATM 8 C C2' BNG . . . F 3 -8.819 5.745 6.555 1 118.69 ? C2' BNG 505 A 1 
HETATM 9 C C3' BNG . . . F 3 -10.005 6.698 6.481 1 117.62 ? C3' BNG 505 A 1 
HETATM 10 C C4' BNG . . . F 3 -9.668 7.925 5.643 1 115.17 ? C4' BNG 505 A 1 
HETATM 11 C C5' BNG . . . F 3 -10.684 8.119 4.522 1 113.93 ? C5' BNG 505 A 1 
HETATM 12 C C6' BNG . . . F 3 -10.169 9.104 3.481 1 111.76 ? C6' BNG 505 A 1 
HETATM 13 C C7' BNG . . . F 3 -10.825 8.861 2.128 1 110.93 ? C7' BNG 505 A 1 
HETATM 14 C C8' BNG . . . F 3 -10.482 9.976 1.147 1 108.97 ? C8' BNG 505 A 1 
HETATM 15 C C9' BNG . . . F 3 -10.287 11.291 1.868 1 108.3 ? C9' BNG 505 A 1 
HETATM 16 O O1 BNG . . . F 3 -9.047 3.377 6.176 1 121.58 ? O1 BNG 505 A 1 
HETATM 17 O O2 BNG . . . F 3 -8.291 1.128 4.593 1 123.41 ? O2 BNG 505 A 1 
HETATM 18 O O3 BNG . . . F 3 -5.521 1.222 3.708 1 122.34 ? O3 BNG 505 A 1 
HETATM 19 O O4 BNG . . . F 3 -3.729 1.913 5.893 1 123.4 ? O4 BNG 505 A 1 
HETATM 20 O O5 BNG . . . F 3 -6.804 3.724 6.702 1 121.43 ? O5 BNG 505 A 1 
HETATM 21 O O6 BNG . . . F 3 -5.333 5.115 8.308 1 121.46 ? O6 BNG 505 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           346 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           21 
#