data_4GC4
#
_model_server_result.job_id            B-GLiYR8uUfFIWEJgJQwZQ 
_model_server_result.datetime_utc      '2024-10-17 11:24:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4gc4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    4GC4 
#
_exptl.entry_id    4GC4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              340.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "6-HYDROXYURIDINE-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4GC4 
_cell.length_a            56.624 
_cell.length_b            56.611 
_cell.length_c            127.21 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4GC4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C9 H13 N2 O10 P' 
_chem_comp.formula_weight    340.181 
_chem_comp.id                BMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "6-HYDROXYURIDINE-5'-PHOSPHATE" 
_chem_comp.type              'rna linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P OP1 BMP doub 70 n n 
P OP2 BMP sing 71 n n 
P OP3 BMP sing 72 n n 
P O5' BMP sing 73 n n 
OP2 HOP2 BMP sing 74 n n 
OP3 HOP3 BMP sing 75 n n 
O5' C5' BMP sing 76 n n 
C5' C4' BMP sing 77 n n 
C5' H5' BMP sing 78 n n 
C5' "H5''" BMP sing 79 n n 
C4' O4' BMP sing 80 n n 
C4' C3' BMP sing 81 n n 
C4' H4' BMP sing 82 n n 
O4' C1' BMP sing 83 n n 
C3' O3' BMP sing 84 n n 
C3' C2' BMP sing 85 n n 
C3' H3' BMP sing 86 n n 
O3' HO3' BMP sing 87 n n 
C2' O2' BMP sing 88 n n 
C2' C1' BMP sing 89 n n 
C2' H2' BMP sing 90 n n 
O2' HO2' BMP sing 91 n n 
C1' N1 BMP sing 92 n n 
C1' H1' BMP sing 93 n n 
N1 C2 BMP sing 94 n n 
N1 C6 BMP sing 95 n n 
C2 O2 BMP doub 96 n n 
C2 N3 BMP sing 97 n n 
N3 C4 BMP sing 98 n n 
N3 HN3 BMP sing 99 n n 
C4 O4 BMP doub 100 n n 
C4 C5 BMP sing 101 n n 
C5 C6 BMP doub 102 n n 
C5 H51 BMP sing 103 n n 
C6 O1 BMP sing 104 n n 
O1 HO1 BMP sing 105 n n 
#
_atom_sites.entry_id                     4GC4 
_atom_sites.fract_transf_matrix[1][1]    0.01766 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017664 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007861 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 BMP A 1 301 1 BMP BMP . 
D 2 BMP B 1 301 2 BMP BMP . 
E 3 HOH A 1 401 2 HOH HOH . 
E 3 HOH A 2 402 4 HOH HOH . 
E 3 HOH A 3 403 7 HOH HOH . 
E 3 HOH A 4 404 8 HOH HOH . 
E 3 HOH A 5 405 12 HOH HOH . 
E 3 HOH A 6 406 13 HOH HOH . 
E 3 HOH A 7 407 14 HOH HOH . 
E 3 HOH A 8 408 17 HOH HOH . 
E 3 HOH A 9 409 18 HOH HOH . 
E 3 HOH A 10 410 21 HOH HOH . 
E 3 HOH A 11 411 25 HOH HOH . 
E 3 HOH A 12 412 26 HOH HOH . 
E 3 HOH A 13 413 28 HOH HOH . 
E 3 HOH A 14 414 30 HOH HOH . 
E 3 HOH A 15 415 32 HOH HOH . 
E 3 HOH A 16 416 33 HOH HOH . 
E 3 HOH A 17 417 36 HOH HOH . 
E 3 HOH A 18 418 38 HOH HOH . 
E 3 HOH A 19 419 40 HOH HOH . 
E 3 HOH A 20 420 42 HOH HOH . 
E 3 HOH A 21 421 45 HOH HOH . 
E 3 HOH A 22 422 48 HOH HOH . 
E 3 HOH A 23 423 49 HOH HOH . 
E 3 HOH A 24 424 51 HOH HOH . 
E 3 HOH A 25 425 53 HOH HOH . 
E 3 HOH A 26 426 57 HOH HOH . 
E 3 HOH A 27 427 58 HOH HOH . 
E 3 HOH A 28 428 59 HOH HOH . 
E 3 HOH A 29 429 62 HOH HOH . 
E 3 HOH A 30 430 64 HOH HOH . 
E 3 HOH A 31 431 65 HOH HOH . 
E 3 HOH A 32 432 66 HOH HOH . 
E 3 HOH A 33 433 70 HOH HOH . 
E 3 HOH A 34 434 72 HOH HOH . 
E 3 HOH A 35 435 77 HOH HOH . 
E 3 HOH A 36 436 78 HOH HOH . 
E 3 HOH A 37 437 79 HOH HOH . 
E 3 HOH A 38 438 80 HOH HOH . 
E 3 HOH A 39 439 82 HOH HOH . 
E 3 HOH A 40 440 83 HOH HOH . 
E 3 HOH A 41 441 86 HOH HOH . 
E 3 HOH A 42 442 87 HOH HOH . 
E 3 HOH A 43 443 91 HOH HOH . 
E 3 HOH A 44 444 92 HOH HOH . 
E 3 HOH A 45 445 94 HOH HOH . 
E 3 HOH A 46 446 97 HOH HOH . 
E 3 HOH A 47 447 98 HOH HOH . 
E 3 HOH A 48 448 99 HOH HOH . 
E 3 HOH A 49 449 101 HOH HOH . 
E 3 HOH A 50 450 102 HOH HOH . 
E 3 HOH A 51 451 103 HOH HOH . 
E 3 HOH A 52 452 105 HOH HOH . 
E 3 HOH A 53 453 109 HOH HOH . 
E 3 HOH A 54 454 110 HOH HOH . 
E 3 HOH A 55 455 117 HOH HOH . 
E 3 HOH A 56 456 119 HOH HOH . 
E 3 HOH A 57 457 120 HOH HOH . 
E 3 HOH A 58 458 124 HOH HOH . 
E 3 HOH A 59 459 127 HOH HOH . 
E 3 HOH A 60 460 130 HOH HOH . 
E 3 HOH A 61 461 132 HOH HOH . 
E 3 HOH A 62 462 134 HOH HOH . 
E 3 HOH A 63 463 135 HOH HOH . 
E 3 HOH A 64 464 136 HOH HOH . 
E 3 HOH A 65 465 137 HOH HOH . 
E 3 HOH A 66 466 138 HOH HOH . 
E 3 HOH A 67 467 142 HOH HOH . 
E 3 HOH A 68 468 143 HOH HOH . 
E 3 HOH A 69 469 144 HOH HOH . 
E 3 HOH A 70 470 146 HOH HOH . 
E 3 HOH A 71 471 147 HOH HOH . 
E 3 HOH A 72 472 148 HOH HOH . 
E 3 HOH A 73 473 154 HOH HOH . 
E 3 HOH A 74 474 155 HOH HOH . 
E 3 HOH A 75 475 159 HOH HOH . 
E 3 HOH A 76 476 160 HOH HOH . 
E 3 HOH A 77 477 161 HOH HOH . 
E 3 HOH A 78 478 164 HOH HOH . 
E 3 HOH A 79 479 169 HOH HOH . 
E 3 HOH A 80 480 171 HOH HOH . 
E 3 HOH A 81 481 172 HOH HOH . 
E 3 HOH A 82 482 174 HOH HOH . 
E 3 HOH A 83 483 178 HOH HOH . 
E 3 HOH A 84 484 182 HOH HOH . 
E 3 HOH A 85 485 183 HOH HOH . 
E 3 HOH A 86 486 184 HOH HOH . 
E 3 HOH A 87 487 188 HOH HOH . 
E 3 HOH A 88 488 189 HOH HOH . 
E 3 HOH A 89 489 190 HOH HOH . 
E 3 HOH A 90 490 193 HOH HOH . 
E 3 HOH A 91 491 194 HOH HOH . 
E 3 HOH A 92 492 195 HOH HOH . 
E 3 HOH A 93 493 196 HOH HOH . 
E 3 HOH A 94 494 201 HOH HOH . 
E 3 HOH A 95 495 205 HOH HOH . 
E 3 HOH A 96 496 207 HOH HOH . 
E 3 HOH A 97 497 208 HOH HOH . 
E 3 HOH A 98 498 210 HOH HOH . 
E 3 HOH A 99 499 211 HOH HOH . 
E 3 HOH A 100 500 214 HOH HOH . 
E 3 HOH A 101 501 218 HOH HOH . 
E 3 HOH A 102 502 219 HOH HOH . 
E 3 HOH A 103 503 220 HOH HOH . 
E 3 HOH A 104 504 227 HOH HOH . 
E 3 HOH A 105 505 229 HOH HOH . 
E 3 HOH A 106 506 230 HOH HOH . 
E 3 HOH A 107 507 232 HOH HOH . 
E 3 HOH A 108 508 237 HOH HOH . 
E 3 HOH A 109 509 238 HOH HOH . 
E 3 HOH A 110 510 241 HOH HOH . 
E 3 HOH A 111 511 251 HOH HOH . 
F 3 HOH B 1 401 1 HOH HOH . 
F 3 HOH B 2 402 3 HOH HOH . 
F 3 HOH B 3 403 5 HOH HOH . 
F 3 HOH B 4 404 6 HOH HOH . 
F 3 HOH B 5 405 9 HOH HOH . 
F 3 HOH B 6 406 10 HOH HOH . 
F 3 HOH B 7 407 11 HOH HOH . 
F 3 HOH B 8 408 15 HOH HOH . 
F 3 HOH B 9 409 16 HOH HOH . 
F 3 HOH B 10 410 19 HOH HOH . 
F 3 HOH B 11 411 20 HOH HOH . 
F 3 HOH B 12 412 22 HOH HOH . 
F 3 HOH B 13 413 23 HOH HOH . 
F 3 HOH B 14 414 24 HOH HOH . 
F 3 HOH B 15 415 27 HOH HOH . 
F 3 HOH B 16 416 29 HOH HOH . 
F 3 HOH B 17 417 34 HOH HOH . 
F 3 HOH B 18 418 35 HOH HOH . 
F 3 HOH B 19 419 37 HOH HOH . 
F 3 HOH B 20 420 39 HOH HOH . 
F 3 HOH B 21 421 41 HOH HOH . 
F 3 HOH B 22 422 43 HOH HOH . 
F 3 HOH B 23 423 44 HOH HOH . 
F 3 HOH B 24 424 46 HOH HOH . 
F 3 HOH B 25 425 47 HOH HOH . 
F 3 HOH B 26 426 50 HOH HOH . 
F 3 HOH B 27 427 52 HOH HOH . 
F 3 HOH B 28 428 54 HOH HOH . 
F 3 HOH B 29 429 55 HOH HOH . 
F 3 HOH B 30 430 56 HOH HOH . 
F 3 HOH B 31 431 60 HOH HOH . 
F 3 HOH B 32 432 61 HOH HOH . 
F 3 HOH B 33 433 63 HOH HOH . 
F 3 HOH B 34 434 67 HOH HOH . 
F 3 HOH B 35 435 71 HOH HOH . 
F 3 HOH B 36 436 73 HOH HOH . 
F 3 HOH B 37 437 74 HOH HOH . 
F 3 HOH B 38 438 75 HOH HOH . 
F 3 HOH B 39 439 76 HOH HOH . 
F 3 HOH B 40 440 81 HOH HOH . 
F 3 HOH B 41 441 84 HOH HOH . 
F 3 HOH B 42 442 85 HOH HOH . 
F 3 HOH B 43 443 88 HOH HOH . 
F 3 HOH B 44 444 89 HOH HOH . 
F 3 HOH B 45 445 90 HOH HOH . 
F 3 HOH B 46 446 93 HOH HOH . 
F 3 HOH B 47 447 95 HOH HOH . 
F 3 HOH B 48 448 96 HOH HOH . 
F 3 HOH B 49 449 100 HOH HOH . 
F 3 HOH B 50 450 104 HOH HOH . 
F 3 HOH B 51 451 107 HOH HOH . 
F 3 HOH B 52 452 108 HOH HOH . 
F 3 HOH B 53 453 113 HOH HOH . 
F 3 HOH B 54 454 114 HOH HOH . 
F 3 HOH B 55 455 115 HOH HOH . 
F 3 HOH B 56 456 116 HOH HOH . 
F 3 HOH B 57 457 118 HOH HOH . 
F 3 HOH B 58 458 121 HOH HOH . 
F 3 HOH B 59 459 122 HOH HOH . 
F 3 HOH B 60 460 123 HOH HOH . 
F 3 HOH B 61 461 125 HOH HOH . 
F 3 HOH B 62 462 126 HOH HOH . 
F 3 HOH B 63 463 128 HOH HOH . 
F 3 HOH B 64 464 129 HOH HOH . 
F 3 HOH B 65 465 131 HOH HOH . 
F 3 HOH B 66 466 133 HOH HOH . 
F 3 HOH B 67 467 139 HOH HOH . 
F 3 HOH B 68 468 141 HOH HOH . 
F 3 HOH B 69 469 145 HOH HOH . 
F 3 HOH B 70 470 151 HOH HOH . 
F 3 HOH B 71 471 153 HOH HOH . 
F 3 HOH B 72 472 156 HOH HOH . 
F 3 HOH B 73 473 157 HOH HOH . 
F 3 HOH B 74 474 158 HOH HOH . 
F 3 HOH B 75 475 162 HOH HOH . 
F 3 HOH B 76 476 163 HOH HOH . 
F 3 HOH B 77 477 166 HOH HOH . 
F 3 HOH B 78 478 167 HOH HOH . 
F 3 HOH B 79 479 168 HOH HOH . 
F 3 HOH B 80 480 170 HOH HOH . 
F 3 HOH B 81 481 173 HOH HOH . 
F 3 HOH B 82 482 175 HOH HOH . 
F 3 HOH B 83 483 176 HOH HOH . 
F 3 HOH B 84 484 179 HOH HOH . 
F 3 HOH B 85 485 180 HOH HOH . 
F 3 HOH B 86 486 185 HOH HOH . 
F 3 HOH B 87 487 186 HOH HOH . 
F 3 HOH B 88 488 197 HOH HOH . 
F 3 HOH B 89 489 198 HOH HOH . 
F 3 HOH B 90 490 199 HOH HOH . 
F 3 HOH B 91 491 200 HOH HOH . 
F 3 HOH B 92 492 202 HOH HOH . 
F 3 HOH B 93 493 203 HOH HOH . 
F 3 HOH B 94 494 204 HOH HOH . 
F 3 HOH B 95 495 206 HOH HOH . 
F 3 HOH B 96 496 209 HOH HOH . 
F 3 HOH B 97 497 212 HOH HOH . 
F 3 HOH B 98 498 213 HOH HOH . 
F 3 HOH B 99 499 217 HOH HOH . 
F 3 HOH B 100 500 221 HOH HOH . 
F 3 HOH B 101 501 222 HOH HOH . 
F 3 HOH B 102 502 223 HOH HOH . 
F 3 HOH B 103 503 228 HOH HOH . 
F 3 HOH B 104 504 231 HOH HOH . 
F 3 HOH B 105 505 233 HOH HOH . 
F 3 HOH B 106 506 234 HOH HOH . 
F 3 HOH B 107 507 235 HOH HOH . 
F 3 HOH B 108 508 236 HOH HOH . 
F 3 HOH B 109 509 239 HOH HOH . 
F 3 HOH B 110 510 240 HOH HOH . 
F 3 HOH B 111 511 252 HOH HOH . 
F 3 HOH B 112 512 253 HOH HOH . 
F 3 HOH B 113 513 254 HOH HOH . 
F 3 HOH B 114 514 255 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P BMP . . . C 2 44.614 20.935 -21.788 1 25.77 ? P BMP 301 A 1 
HETATM 2 O OP1 BMP . . . C 2 43.467 21.622 -22.426 1 26.85 ? OP1 BMP 301 A 1 
HETATM 3 O OP2 BMP . . . C 2 45.492 19.994 -22.726 1 26.21 ? OP2 BMP 301 A 1 
HETATM 4 O OP3 BMP . . . C 2 45.505 21.999 -20.993 1 26.15 ? OP3 BMP 301 A 1 
HETATM 5 O O5' BMP . . . C 2 44.042 19.894 -20.728 1 25.21 ? O5' BMP 301 A 1 
HETATM 6 C C5' BMP . . . C 2 42.928 20.208 -19.907 1 28.49 ? C5' BMP 301 A 1 
HETATM 7 C C4' BMP . . . C 2 42.667 19.084 -18.943 1 24.36 ? C4' BMP 301 A 1 
HETATM 8 O O4' BMP . . . C 2 41.682 19.501 -17.97 1 23.07 ? O4' BMP 301 A 1 
HETATM 9 C C3' BMP . . . C 2 42.132 17.808 -19.574 1 22.51 ? C3' BMP 301 A 1 
HETATM 10 O O3' BMP . . . C 2 42.553 16.686 -18.795 1 24.43 ? O3' BMP 301 A 1 
HETATM 11 C C2' BMP . . . C 2 40.628 17.971 -19.433 1 22.71 ? C2' BMP 301 A 1 
HETATM 12 O O2' BMP . . . C 2 39.932 16.738 -19.442 1 23.14 ? O2' BMP 301 A 1 
HETATM 13 C C1' BMP . . . C 2 40.518 18.711 -18.088 1 23.39 ? C1' BMP 301 A 1 
HETATM 14 N N1 BMP . . . C 2 39.347 19.604 -17.957 1 23.03 ? N1 BMP 301 A 1 
HETATM 15 C C2 BMP . . . C 2 39.063 20.588 -18.838 1 22.33 ? C2 BMP 301 A 1 
HETATM 16 O O2 BMP . . . C 2 39.786 20.783 -19.805 1 23.79 ? O2 BMP 301 A 1 
HETATM 17 N N3 BMP . . . C 2 37.972 21.362 -18.666 1 23.77 ? N3 BMP 301 A 1 
HETATM 18 C C4 BMP . . . C 2 37.135 21.21 -17.623 1 24.45 ? C4 BMP 301 A 1 
HETATM 19 O O4 BMP . . . C 2 36.164 21.961 -17.528 1 25.22 ? O4 BMP 301 A 1 
HETATM 20 C C5 BMP . . . C 2 37.407 20.207 -16.675 1 26.48 ? C5 BMP 301 A 1 
HETATM 21 C C6 BMP . . . C 2 38.525 19.428 -16.869 1 23.79 ? C6 BMP 301 A 1 
HETATM 22 O O1 BMP . . . C 2 38.852 18.468 -15.986 1 27.06 ? O1 BMP 301 A 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           22 
#