data_4GCQ # _model_server_result.job_id EPJj-LK7_rssfDkh5xx6mQ _model_server_result.datetime_utc '2024-12-01 12:20:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gcq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 4GCQ # _exptl.entry_id 4GCQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 380.416 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S,5R,6R,7R)-6-{[(2R)-2-carboxy-2-phenylacetyl]amino}-7-hydroxy-3,3-dimethyl-4-thia-1-azabicyclo[3.2.0]heptane-2-carbo xylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4GCQ _cell.length_a 116.71 _cell.length_b 116.71 _cell.length_c 53.89 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GCQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1,2,3 B,D,F 2 1,4,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 58.355 -101.073825 0 5 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 116.71 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C17 H20 N2 O6 S' _chem_comp.formula_weight 380.416 _chem_comp.id 0JM _chem_comp.mon_nstd_flag . _chem_comp.name '(2S,5R,6R,7R)-6-{[(2R)-2-carboxy-2-phenylacetyl]amino}-7-hydroxy-3,3-dimethyl-4-thia-1-azabicyclo[3.2.0]heptane-2-carbo xylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Carbenicillin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C17 0JM doub 1 n n O2 C17 0JM sing 2 n n C17 C7 0JM sing 3 n n C7 C8 0JM sing 4 n n C7 C1 0JM sing 5 n n O6 C8 0JM doub 6 n n C8 N1 0JM sing 7 n n C2 C1 0JM doub 8 n y C2 C3 0JM sing 9 n y N1 C9 0JM sing 10 n n C1 C6 0JM sing 11 n y O4 C10 0JM sing 12 n n C9 C10 0JM sing 13 n n C9 C11 0JM sing 14 n n C3 C4 0JM doub 15 n y C10 N2 0JM sing 16 n n C6 C5 0JM doub 17 n y C11 N2 0JM sing 18 n n C11 S1 0JM sing 19 n n C4 C5 0JM sing 20 n y N2 C13 0JM sing 21 n n S1 C12 0JM sing 22 n n C13 C12 0JM sing 23 n n C13 C16 0JM sing 24 n n O1 C16 0JM doub 25 n n C12 C15 0JM sing 26 n n C12 C14 0JM sing 27 n n C16 O5 0JM sing 28 n n O5 H1 0JM sing 29 n n C13 H2 0JM sing 30 n n C14 H3 0JM sing 31 n n C14 H4 0JM sing 32 n n C14 H5 0JM sing 33 n n C15 H6 0JM sing 34 n n C15 H7 0JM sing 35 n n C15 H8 0JM sing 36 n n C11 H10 0JM sing 37 n n C10 H11 0JM sing 38 n n O4 H12 0JM sing 39 n n C9 H13 0JM sing 40 n n N1 H14 0JM sing 41 n n C7 H15 0JM sing 42 n n O2 H16 0JM sing 43 n n C6 H17 0JM sing 44 n n C2 H18 0JM sing 45 n n C3 H19 0JM sing 46 n n C4 H20 0JM sing 47 n n C5 H21 0JM sing 48 n n # _atom_sites.entry_id 4GCQ _atom_sites.fract_transf_matrix[1][1] 0.008568 _atom_sites.fract_transf_matrix[1][2] 0.004947 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009894 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018556 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 0JM A 1 401 1 0JM CB9 . D 2 0JM B 1 401 2 0JM CB9 . E 3 HOH A 1 501 9 HOH HOH . E 3 HOH A 2 502 12 HOH HOH . E 3 HOH A 3 503 18 HOH HOH . E 3 HOH A 4 504 22 HOH HOH . E 3 HOH A 5 505 24 HOH HOH . E 3 HOH A 6 506 30 HOH HOH . E 3 HOH A 7 507 32 HOH HOH . E 3 HOH A 8 508 33 HOH HOH . E 3 HOH A 9 509 34 HOH HOH . E 3 HOH A 10 510 37 HOH HOH . E 3 HOH A 11 511 38 HOH HOH . E 3 HOH A 12 512 43 HOH HOH . E 3 HOH A 13 513 49 HOH HOH . E 3 HOH A 14 514 53 HOH HOH . E 3 HOH A 15 515 59 HOH HOH . E 3 HOH A 16 516 63 HOH HOH . E 3 HOH A 17 517 68 HOH HOH . E 3 HOH A 18 518 70 HOH HOH . E 3 HOH A 19 519 72 HOH HOH . E 3 HOH A 20 520 74 HOH HOH . E 3 HOH A 21 521 76 HOH HOH . E 3 HOH A 22 522 86 HOH HOH . E 3 HOH A 23 523 87 HOH HOH . E 3 HOH A 24 524 102 HOH HOH . E 3 HOH A 25 525 103 HOH HOH . E 3 HOH A 26 526 104 HOH HOH . E 3 HOH A 27 527 106 HOH HOH . E 3 HOH A 28 528 111 HOH HOH . E 3 HOH A 29 529 112 HOH HOH . E 3 HOH A 30 530 117 HOH HOH . E 3 HOH A 31 531 151 HOH HOH . E 3 HOH A 32 532 153 HOH HOH . E 3 HOH A 33 533 157 HOH HOH . E 3 HOH A 34 534 166 HOH HOH . E 3 HOH A 35 535 170 HOH HOH . E 3 HOH A 36 536 174 HOH HOH . E 3 HOH A 37 537 176 HOH HOH . E 3 HOH A 38 538 181 HOH HOH . E 3 HOH A 39 539 184 HOH HOH . E 3 HOH A 40 540 195 HOH HOH . E 3 HOH A 41 541 236 HOH HOH . E 3 HOH A 42 542 244 HOH HOH . E 3 HOH A 43 543 252 HOH HOH . E 3 HOH A 44 544 262 HOH HOH . E 3 HOH A 45 545 310 HOH HOH . E 3 HOH A 46 546 311 HOH HOH . E 3 HOH A 47 547 317 HOH HOH . E 3 HOH A 48 548 318 HOH HOH . E 3 HOH A 49 549 321 HOH HOH . E 3 HOH A 50 550 323 HOH HOH . E 3 HOH A 51 551 326 HOH HOH . E 3 HOH A 52 552 328 HOH HOH . E 3 HOH A 53 553 337 HOH HOH . E 3 HOH A 54 554 352 HOH HOH . E 3 HOH A 55 555 354 HOH HOH . E 3 HOH A 56 556 356 HOH HOH . E 3 HOH A 57 557 369 HOH HOH . E 3 HOH A 58 558 371 HOH HOH . E 3 HOH A 59 559 381 HOH HOH . E 3 HOH A 60 560 386 HOH HOH . E 3 HOH A 61 561 396 HOH HOH . E 3 HOH A 62 562 397 HOH HOH . E 3 HOH A 63 563 408 HOH HOH . E 3 HOH A 64 564 409 HOH HOH . E 3 HOH A 65 565 413 HOH HOH . E 3 HOH A 66 566 421 HOH HOH . E 3 HOH A 67 567 423 HOH HOH . E 3 HOH A 68 568 425 HOH HOH . E 3 HOH A 69 569 431 HOH HOH . E 3 HOH A 70 570 432 HOH HOH . E 3 HOH A 71 571 434 HOH HOH . E 3 HOH A 72 572 436 HOH HOH . E 3 HOH A 73 573 440 HOH HOH . E 3 HOH A 74 574 441 HOH HOH . E 3 HOH A 75 575 442 HOH HOH . E 3 HOH A 76 576 444 HOH HOH . E 3 HOH A 77 577 445 HOH HOH . E 3 HOH A 78 578 448 HOH HOH . E 3 HOH A 79 579 449 HOH HOH . E 3 HOH A 80 580 450 HOH HOH . E 3 HOH A 81 581 454 HOH HOH . E 3 HOH A 82 582 456 HOH HOH . E 3 HOH A 83 583 464 HOH HOH . E 3 HOH A 84 584 466 HOH HOH . E 3 HOH A 85 585 468 HOH HOH . E 3 HOH A 86 586 469 HOH HOH . E 3 HOH A 87 587 470 HOH HOH . E 3 HOH A 88 588 471 HOH HOH . E 3 HOH A 89 589 476 HOH HOH . E 3 HOH A 90 590 477 HOH HOH . E 3 HOH A 91 591 481 HOH HOH . E 3 HOH A 92 592 483 HOH HOH . E 3 HOH A 93 593 485 HOH HOH . E 3 HOH A 94 594 489 HOH HOH . E 3 HOH A 95 595 490 HOH HOH . E 3 HOH A 96 596 491 HOH HOH . E 3 HOH A 97 597 495 HOH HOH . E 3 HOH A 98 598 496 HOH HOH . E 3 HOH A 99 599 497 HOH HOH . E 3 HOH A 100 600 498 HOH HOH . F 3 HOH B 1 501 11 HOH HOH . F 3 HOH B 2 502 20 HOH HOH . F 3 HOH B 3 503 21 HOH HOH . F 3 HOH B 4 504 23 HOH HOH . F 3 HOH B 5 505 26 HOH HOH . F 3 HOH B 6 506 29 HOH HOH . F 3 HOH B 7 507 35 HOH HOH . F 3 HOH B 8 508 36 HOH HOH . F 3 HOH B 9 509 39 HOH HOH . F 3 HOH B 10 510 41 HOH HOH . F 3 HOH B 11 511 42 HOH HOH . F 3 HOH B 12 512 44 HOH HOH . F 3 HOH B 13 513 46 HOH HOH . F 3 HOH B 14 514 58 HOH HOH . F 3 HOH B 15 515 64 HOH HOH . F 3 HOH B 16 516 65 HOH HOH . F 3 HOH B 17 517 67 HOH HOH . F 3 HOH B 18 518 69 HOH HOH . F 3 HOH B 19 519 77 HOH HOH . F 3 HOH B 20 520 80 HOH HOH . F 3 HOH B 21 521 81 HOH HOH . F 3 HOH B 22 522 83 HOH HOH . F 3 HOH B 23 523 85 HOH HOH . F 3 HOH B 24 524 89 HOH HOH . F 3 HOH B 25 525 90 HOH HOH . F 3 HOH B 26 526 105 HOH HOH . F 3 HOH B 27 527 107 HOH HOH . F 3 HOH B 28 528 110 HOH HOH . F 3 HOH B 29 529 118 HOH HOH . F 3 HOH B 30 530 120 HOH HOH . F 3 HOH B 31 531 130 HOH HOH . F 3 HOH B 32 532 131 HOH HOH . F 3 HOH B 33 533 134 HOH HOH . F 3 HOH B 34 534 137 HOH HOH . F 3 HOH B 35 535 142 HOH HOH . F 3 HOH B 36 536 145 HOH HOH . F 3 HOH B 37 537 146 HOH HOH . F 3 HOH B 38 538 147 HOH HOH . F 3 HOH B 39 539 150 HOH HOH . F 3 HOH B 40 540 156 HOH HOH . F 3 HOH B 41 541 158 HOH HOH . F 3 HOH B 42 542 173 HOH HOH . F 3 HOH B 43 543 175 HOH HOH . F 3 HOH B 44 544 178 HOH HOH . F 3 HOH B 45 545 188 HOH HOH . F 3 HOH B 46 546 193 HOH HOH . F 3 HOH B 47 547 194 HOH HOH . F 3 HOH B 48 548 196 HOH HOH . F 3 HOH B 49 549 222 HOH HOH . F 3 HOH B 50 550 238 HOH HOH . F 3 HOH B 51 551 267 HOH HOH . F 3 HOH B 52 552 268 HOH HOH . F 3 HOH B 53 553 270 HOH HOH . F 3 HOH B 54 554 275 HOH HOH . F 3 HOH B 55 555 280 HOH HOH . F 3 HOH B 56 556 283 HOH HOH . F 3 HOH B 57 557 284 HOH HOH . F 3 HOH B 58 558 285 HOH HOH . F 3 HOH B 59 559 287 HOH HOH . F 3 HOH B 60 560 288 HOH HOH . F 3 HOH B 61 561 303 HOH HOH . F 3 HOH B 62 562 353 HOH HOH . F 3 HOH B 63 563 367 HOH HOH . F 3 HOH B 64 564 373 HOH HOH . F 3 HOH B 65 565 377 HOH HOH . F 3 HOH B 66 566 379 HOH HOH . F 3 HOH B 67 567 384 HOH HOH . F 3 HOH B 68 568 385 HOH HOH . F 3 HOH B 69 569 401 HOH HOH . F 3 HOH B 70 570 402 HOH HOH . F 3 HOH B 71 571 416 HOH HOH . F 3 HOH B 72 572 417 HOH HOH . F 3 HOH B 73 573 418 HOH HOH . F 3 HOH B 74 574 420 HOH HOH . F 3 HOH B 75 575 422 HOH HOH . F 3 HOH B 76 576 427 HOH HOH . F 3 HOH B 77 577 428 HOH HOH . F 3 HOH B 78 578 429 HOH HOH . F 3 HOH B 79 579 430 HOH HOH . F 3 HOH B 80 580 433 HOH HOH . F 3 HOH B 81 581 435 HOH HOH . F 3 HOH B 82 582 437 HOH HOH . F 3 HOH B 83 583 438 HOH HOH . F 3 HOH B 84 584 439 HOH HOH . F 3 HOH B 85 585 443 HOH HOH . F 3 HOH B 86 586 446 HOH HOH . F 3 HOH B 87 587 447 HOH HOH . F 3 HOH B 88 588 451 HOH HOH . F 3 HOH B 89 589 452 HOH HOH . F 3 HOH B 90 590 453 HOH HOH . F 3 HOH B 91 591 455 HOH HOH . F 3 HOH B 92 592 457 HOH HOH . F 3 HOH B 93 593 458 HOH HOH . F 3 HOH B 94 594 459 HOH HOH . F 3 HOH B 95 595 460 HOH HOH . F 3 HOH B 96 596 461 HOH HOH . F 3 HOH B 97 597 462 HOH HOH . F 3 HOH B 98 598 463 HOH HOH . F 3 HOH B 99 599 465 HOH HOH . F 3 HOH B 100 600 467 HOH HOH . F 3 HOH B 101 601 472 HOH HOH . F 3 HOH B 102 602 473 HOH HOH . F 3 HOH B 103 603 474 HOH HOH . F 3 HOH B 104 604 475 HOH HOH . F 3 HOH B 105 605 478 HOH HOH . F 3 HOH B 106 606 479 HOH HOH . F 3 HOH B 107 607 480 HOH HOH . F 3 HOH B 108 608 482 HOH HOH . F 3 HOH B 109 609 484 HOH HOH . F 3 HOH B 110 610 486 HOH HOH . F 3 HOH B 111 611 487 HOH HOH . F 3 HOH B 112 612 488 HOH HOH . F 3 HOH B 113 613 492 HOH HOH . F 3 HOH B 114 614 493 HOH HOH . F 3 HOH B 115 615 494 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5 0JM . . . D 2 55.681 -16.731 -4.535 1 92.01 ? O5 0JM 401 B 1 HETATM 2 C C16 0JM . . . D 2 55.699 -17.964 -4.301 1 91.32 ? C16 0JM 401 B 1 HETATM 3 O O1 0JM . . . D 2 54.931 -18.769 -4.866 1 92.49 ? O1 0JM 401 B 1 HETATM 4 C C13 0JM . . . D 2 56.69 -18.485 -3.3 1 89.9 ? C13 0JM 401 B 1 HETATM 5 C C12 0JM . . . D 2 58.084 -18.671 -3.96 1 90.2 ? C12 0JM 401 B 1 HETATM 6 C C14 0JM . . . D 2 58.2 -18.135 -5.394 1 89.97 ? C14 0JM 401 B 1 HETATM 7 C C15 0JM . . . D 2 58.451 -20.139 -4.011 1 89.54 ? C15 0JM 401 B 1 HETATM 8 S S1 0JM . . . D 2 59.263 -17.812 -2.958 1 90.79 ? S1 0JM 401 B 1 HETATM 9 N N2 0JM . . . D 2 56.693 -17.479 -2.207 1 88.4 ? N2 0JM 401 B 1 HETATM 10 C C11 0JM . . . D 2 58.044 -16.905 -2.023 1 87.75 ? C11 0JM 401 B 1 HETATM 11 C C10 0JM . . . D 2 56.622 -17.928 -0.798 1 85.99 ? C10 0JM 401 B 1 HETATM 12 O O4 0JM . . . D 2 55.655 -17.257 0.013 1 84.87 ? O4 0JM 401 B 1 HETATM 13 C C9 0JM . . . D 2 57.934 -17.222 -0.529 1 84.38 ? C9 0JM 401 B 1 HETATM 14 N N1 0JM . . . D 2 58.799 -18.283 -0.039 1 77.52 ? N1 0JM 401 B 1 HETATM 15 C C8 0JM . . . D 2 60.094 -18.126 0.254 1 71.1 ? C8 0JM 401 B 1 HETATM 16 O O6 0JM . . . D 2 60.718 -17.074 0.135 1 69.67 ? O6 0JM 401 B 1 HETATM 17 C C7 0JM . . . D 2 60.778 -19.37 0.774 1 66.45 ? C7 0JM 401 B 1 HETATM 18 C C17 0JM . . . D 2 61.621 -18.984 1.968 1 66.36 ? C17 0JM 401 B 1 HETATM 19 O O2 0JM . . . D 2 61.208 -18.052 2.721 1 65.44 ? O2 0JM 401 B 1 HETATM 20 O O3 0JM . . . D 2 62.701 -19.588 2.164 1 67.17 ? O3 0JM 401 B 1 HETATM 21 C C1 0JM . . . D 2 61.498 -20.1 -0.321 1 59.87 ? C1 0JM 401 B 1 HETATM 22 C C6 0JM . . . D 2 61.81 -19.456 -1.531 1 58.45 ? C6 0JM 401 B 1 HETATM 23 C C2 0JM . . . D 2 61.834 -21.44 -0.145 1 55.51 ? C2 0JM 401 B 1 HETATM 24 C C3 0JM . . . D 2 62.481 -22.107 -1.166 1 52.38 ? C3 0JM 401 B 1 HETATM 25 C C4 0JM . . . D 2 62.793 -21.455 -2.357 1 54.15 ? C4 0JM 401 B 1 HETATM 26 C C5 0JM . . . D 2 62.459 -20.119 -2.567 1 55.76 ? C5 0JM 401 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #