data_4GD7 # _model_server_result.job_id zzqtSalLIMdwfVKw1GDK-A _model_server_result.datetime_utc '2024-11-12 21:09:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gd7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 4GD7 # _exptl.entry_id 4GD7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4GD7 _cell.length_a 95.784 _cell.length_b 95.784 _cell.length_c 81.682 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GD7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 0 54.454667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 42 A ARG 42 1_555 A N CME 43 A CME 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C CME 43 A CME 43 1_555 A N GLY 44 A GLY 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 A C MET 179 A MET 179 1_555 A N CME 180 A CME 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale4 A C CME 180 A CME 180 1_555 A N ALA 181 A ALA 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale5 A C PRO 194 A PRO 194 1_555 A N CSD 195 A CSD 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 A C CSD 195 A CSD 195 1_555 A N HIS 196 A HIS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 335 n n S O2 SO4 doub 336 n n S O3 SO4 sing 337 n n S O4 SO4 sing 338 n n # _atom_sites.entry_id 4GD7 _atom_sites.fract_transf_matrix[1][1] 0.01044 _atom_sites.fract_transf_matrix[1][2] 0.006028 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012055 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012243 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 401 314 EDO EDO . C 3 TIY A 1 402 500 TIY P67 . D 4 SO4 A 1 403 501 SO4 SO4 . E 4 SO4 A 1 404 502 SO4 SO4 . F 4 SO4 A 1 405 503 SO4 SO4 . G 5 HOH A 1 501 600 HOH HOH . G 5 HOH A 2 502 602 HOH HOH . G 5 HOH A 3 503 605 HOH HOH . G 5 HOH A 4 504 609 HOH HOH . G 5 HOH A 5 505 610 HOH HOH . G 5 HOH A 6 506 611 HOH HOH . G 5 HOH A 7 507 612 HOH HOH . G 5 HOH A 8 508 613 HOH HOH . G 5 HOH A 9 509 614 HOH HOH . G 5 HOH A 10 510 615 HOH HOH . G 5 HOH A 11 511 617 HOH HOH . G 5 HOH A 12 512 618 HOH HOH . G 5 HOH A 13 513 619 HOH HOH . G 5 HOH A 14 514 620 HOH HOH . G 5 HOH A 15 515 625 HOH HOH . G 5 HOH A 16 516 626 HOH HOH . G 5 HOH A 17 517 627 HOH HOH . G 5 HOH A 18 518 628 HOH HOH . G 5 HOH A 19 519 631 HOH HOH . G 5 HOH A 20 520 633 HOH HOH . G 5 HOH A 21 521 634 HOH HOH . G 5 HOH A 22 522 635 HOH HOH . G 5 HOH A 23 523 636 HOH HOH . G 5 HOH A 24 524 637 HOH HOH . G 5 HOH A 25 525 638 HOH HOH . G 5 HOH A 26 526 639 HOH HOH . G 5 HOH A 27 527 644 HOH HOH . G 5 HOH A 28 528 646 HOH HOH . G 5 HOH A 29 529 652 HOH HOH . G 5 HOH A 30 530 656 HOH HOH . G 5 HOH A 31 531 659 HOH HOH . G 5 HOH A 32 532 660 HOH HOH . G 5 HOH A 33 533 664 HOH HOH . G 5 HOH A 34 534 669 HOH HOH . G 5 HOH A 35 535 672 HOH HOH . G 5 HOH A 36 536 673 HOH HOH . G 5 HOH A 37 537 675 HOH HOH . G 5 HOH A 38 538 676 HOH HOH . G 5 HOH A 39 539 678 HOH HOH . G 5 HOH A 40 540 684 HOH HOH . G 5 HOH A 41 541 685 HOH HOH . G 5 HOH A 42 542 687 HOH HOH . G 5 HOH A 43 543 693 HOH HOH . G 5 HOH A 44 544 695 HOH HOH . G 5 HOH A 45 545 702 HOH HOH . G 5 HOH A 46 546 719 HOH HOH . G 5 HOH A 47 547 730 HOH HOH . G 5 HOH A 48 548 738 HOH HOH . G 5 HOH A 49 549 754 HOH HOH . G 5 HOH A 50 550 759 HOH HOH . G 5 HOH A 51 551 760 HOH HOH . G 5 HOH A 52 552 761 HOH HOH . G 5 HOH A 53 553 762 HOH HOH . G 5 HOH A 54 554 763 HOH HOH . G 5 HOH A 55 555 764 HOH HOH . G 5 HOH A 56 556 765 HOH HOH . G 5 HOH A 57 557 766 HOH HOH . G 5 HOH A 58 558 767 HOH HOH . G 5 HOH A 59 559 768 HOH HOH . G 5 HOH A 60 560 769 HOH HOH . G 5 HOH A 61 561 772 HOH HOH . G 5 HOH A 62 562 773 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . E 4 38.382 -17.605 33.922 1 51.84 ? S SO4 404 A 1 HETATM 2 O O1 SO4 . . . E 4 39.742 -17.539 33.453 1 52.41 ? O1 SO4 404 A 1 HETATM 3 O O2 SO4 . . . E 4 37.462 -16.876 33.076 1 49.2 ? O2 SO4 404 A 1 HETATM 4 O O3 SO4 . . . E 4 37.94 -18.978 34 1 53.07 ? O3 SO4 404 A 1 HETATM 5 O O4 SO4 . . . E 4 38.394 -17.062 35.254 1 56 ? O4 SO4 404 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #