data_4GD8 # _model_server_result.job_id Fp0KQ-DY_lILBgoFG7WcZA _model_server_result.datetime_utc '2024-11-15 20:35:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gd8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4GD8 # _exptl.entry_id 4GD8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 426.444 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S,3R)-4-(2-aminoethylcarbamoyloxy)-2-[(2-methanoylindolizin-3-yl)amino]-3-methyl-3-sulfino-butanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GD8 _cell.length_a 49.394 _cell.length_b 55.46 _cell.length_c 83.649 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GD8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 73 A CYS 77 1_555 A SG CYS 119 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 A OG SER 66 A SER 70 1_555 B C10 MXF . A MXF 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? # _chem_comp.formula 'C17 H22 N4 O7 S' _chem_comp.formula_weight 426.444 _chem_comp.id MXF _chem_comp.mon_nstd_flag . _chem_comp.name '(2S,3R)-4-(2-aminoethylcarbamoyloxy)-2-[(2-methanoylindolizin-3-yl)amino]-3-methyl-3-sulfino-butanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'penam sulfone SA3-53, open form' # _atom_sites.entry_id 4GD8 _atom_sites.fract_transf_matrix[1][1] 0.020245 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018031 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011955 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MXF A 1 301 1 MXF DRG . C 3 MA4 A 1 302 600 MA4 MA4 . D 3 MA4 A 1 303 601 MA4 MA4 . E 4 HOH A 1 401 1 HOH HOH . E 4 HOH A 2 402 2 HOH HOH . E 4 HOH A 3 403 3 HOH HOH . E 4 HOH A 4 404 4 HOH HOH . E 4 HOH A 5 405 5 HOH HOH . E 4 HOH A 6 406 6 HOH HOH . E 4 HOH A 7 407 7 HOH HOH . E 4 HOH A 8 408 8 HOH HOH . E 4 HOH A 9 409 9 HOH HOH . E 4 HOH A 10 410 10 HOH HOH . E 4 HOH A 11 411 11 HOH HOH . E 4 HOH A 12 412 12 HOH HOH . E 4 HOH A 13 413 13 HOH HOH . E 4 HOH A 14 414 14 HOH HOH . E 4 HOH A 15 415 15 HOH HOH . E 4 HOH A 16 416 16 HOH HOH . E 4 HOH A 17 417 18 HOH HOH . E 4 HOH A 18 418 19 HOH HOH . E 4 HOH A 19 419 20 HOH HOH . E 4 HOH A 20 420 21 HOH HOH . E 4 HOH A 21 421 22 HOH HOH . E 4 HOH A 22 422 23 HOH HOH . E 4 HOH A 23 423 24 HOH HOH . E 4 HOH A 24 424 25 HOH HOH . E 4 HOH A 25 425 26 HOH HOH . E 4 HOH A 26 426 27 HOH HOH . E 4 HOH A 27 427 28 HOH HOH . E 4 HOH A 28 428 29 HOH HOH . E 4 HOH A 29 429 30 HOH HOH . E 4 HOH A 30 430 31 HOH HOH . E 4 HOH A 31 431 32 HOH HOH . E 4 HOH A 32 432 33 HOH HOH . E 4 HOH A 33 433 34 HOH HOH . E 4 HOH A 34 434 35 HOH HOH . E 4 HOH A 35 435 37 HOH HOH . E 4 HOH A 36 436 38 HOH HOH . E 4 HOH A 37 437 39 HOH HOH . E 4 HOH A 38 438 40 HOH HOH . E 4 HOH A 39 439 41 HOH HOH . E 4 HOH A 40 440 42 HOH HOH . E 4 HOH A 41 441 43 HOH HOH . E 4 HOH A 42 442 44 HOH HOH . E 4 HOH A 43 443 45 HOH HOH . E 4 HOH A 44 444 46 HOH HOH . E 4 HOH A 45 445 47 HOH HOH . E 4 HOH A 46 446 48 HOH HOH . E 4 HOH A 47 447 49 HOH HOH . E 4 HOH A 48 448 50 HOH HOH . E 4 HOH A 49 449 51 HOH HOH . E 4 HOH A 50 450 52 HOH HOH . E 4 HOH A 51 451 53 HOH HOH . E 4 HOH A 52 452 54 HOH HOH . E 4 HOH A 53 453 55 HOH HOH . E 4 HOH A 54 454 56 HOH HOH . E 4 HOH A 55 455 57 HOH HOH . E 4 HOH A 56 456 58 HOH HOH . E 4 HOH A 57 457 59 HOH HOH . E 4 HOH A 58 458 60 HOH HOH . E 4 HOH A 59 459 61 HOH HOH . E 4 HOH A 60 460 62 HOH HOH . E 4 HOH A 61 461 63 HOH HOH . E 4 HOH A 62 462 64 HOH HOH . E 4 HOH A 63 463 65 HOH HOH . E 4 HOH A 64 464 66 HOH HOH . E 4 HOH A 65 465 67 HOH HOH . E 4 HOH A 66 466 68 HOH HOH . E 4 HOH A 67 467 69 HOH HOH . E 4 HOH A 68 468 70 HOH HOH . E 4 HOH A 69 469 72 HOH HOH . E 4 HOH A 70 470 73 HOH HOH . E 4 HOH A 71 471 74 HOH HOH . E 4 HOH A 72 472 75 HOH HOH . E 4 HOH A 73 473 76 HOH HOH . E 4 HOH A 74 474 77 HOH HOH . E 4 HOH A 75 475 78 HOH HOH . E 4 HOH A 76 476 79 HOH HOH . E 4 HOH A 77 477 80 HOH HOH . E 4 HOH A 78 478 81 HOH HOH . E 4 HOH A 79 479 82 HOH HOH . E 4 HOH A 80 480 83 HOH HOH . E 4 HOH A 81 481 84 HOH HOH . E 4 HOH A 82 482 85 HOH HOH . E 4 HOH A 83 483 86 HOH HOH . E 4 HOH A 84 484 87 HOH HOH . E 4 HOH A 85 485 88 HOH HOH . E 4 HOH A 86 486 89 HOH HOH . E 4 HOH A 87 487 90 HOH HOH . E 4 HOH A 88 488 91 HOH HOH . E 4 HOH A 89 489 92 HOH HOH . E 4 HOH A 90 490 93 HOH HOH . E 4 HOH A 91 491 94 HOH HOH . E 4 HOH A 92 492 95 HOH HOH . E 4 HOH A 93 493 96 HOH HOH . E 4 HOH A 94 494 97 HOH HOH . E 4 HOH A 95 495 98 HOH HOH . E 4 HOH A 96 496 99 HOH HOH . E 4 HOH A 97 497 100 HOH HOH . E 4 HOH A 98 498 102 HOH HOH . E 4 HOH A 99 499 108 HOH HOH . E 4 HOH A 100 500 110 HOH HOH . E 4 HOH A 101 501 111 HOH HOH . E 4 HOH A 102 502 112 HOH HOH . E 4 HOH A 103 503 113 HOH HOH . E 4 HOH A 104 504 116 HOH HOH . E 4 HOH A 105 505 117 HOH HOH . E 4 HOH A 106 506 119 HOH HOH . E 4 HOH A 107 507 120 HOH HOH . E 4 HOH A 108 508 121 HOH HOH . E 4 HOH A 109 509 122 HOH HOH . E 4 HOH A 110 510 123 HOH HOH . E 4 HOH A 111 511 124 HOH HOH . E 4 HOH A 112 512 125 HOH HOH . E 4 HOH A 113 513 127 HOH HOH . E 4 HOH A 114 514 128 HOH HOH . E 4 HOH A 115 515 132 HOH HOH . E 4 HOH A 116 516 3 HOH HOH . E 4 HOH A 117 517 4 HOH HOH . E 4 HOH A 118 518 6 HOH HOH . E 4 HOH A 119 519 7 HOH HOH . E 4 HOH A 120 520 8 HOH HOH . E 4 HOH A 121 521 10 HOH HOH . E 4 HOH A 122 522 11 HOH HOH . E 4 HOH A 123 523 12 HOH HOH . E 4 HOH A 124 524 14 HOH HOH . E 4 HOH A 125 525 15 HOH HOH . E 4 HOH A 126 526 17 HOH HOH . E 4 HOH A 127 527 19 HOH HOH . E 4 HOH A 128 528 21 HOH HOH . E 4 HOH A 129 529 22 HOH HOH . E 4 HOH A 130 530 23 HOH HOH . E 4 HOH A 131 531 25 HOH HOH . E 4 HOH A 132 532 29 HOH HOH . E 4 HOH A 133 533 30 HOH HOH . E 4 HOH A 134 534 31 HOH HOH . E 4 HOH A 135 535 32 HOH HOH . E 4 HOH A 136 536 33 HOH HOH . E 4 HOH A 137 537 34 HOH HOH . E 4 HOH A 138 538 35 HOH HOH . E 4 HOH A 139 539 38 HOH HOH . E 4 HOH A 140 540 39 HOH HOH . E 4 HOH A 141 541 41 HOH HOH . E 4 HOH A 142 542 43 HOH HOH . E 4 HOH A 143 543 48 HOH HOH . E 4 HOH A 144 544 49 HOH HOH . E 4 HOH A 145 545 51 HOH HOH . E 4 HOH A 146 546 53 HOH HOH . E 4 HOH A 147 547 54 HOH HOH . E 4 HOH A 148 548 56 HOH HOH . E 4 HOH A 149 549 1 HOH HOH . E 4 HOH A 150 550 14 HOH HOH . E 4 HOH A 151 551 17 HOH HOH . E 4 HOH A 152 552 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MXF . . . B 2 15.322 -11.099 3.697 1 25.15 ? C1 MXF 301 A 1 HETATM 2 C C2 MXF . . . B 2 15.66 -10.122 4.64 1 15.28 ? C2 MXF 301 A 1 HETATM 3 C C3 MXF . . . B 2 15.471 -8.809 4.345 1 23.56 ? C3 MXF 301 A 1 HETATM 4 C C4 MXF . . . B 2 15.698 -7.686 5.049 1 27.08 ? C4 MXF 301 A 1 HETATM 5 C C5 MXF . . . B 2 15.3 -6.651 4.283 1 25.54 ? C5 MXF 301 A 1 HETATM 6 C C6 MXF . . . B 2 14.79 -7.105 3.116 1 18.49 ? C6 MXF 301 A 1 HETATM 7 C C7 MXF . . . B 2 14.537 -9.405 2.169 1 28.9 ? C7 MXF 301 A 1 HETATM 8 C C8 MXF . . . B 2 14.766 -10.752 2.466 1 25.74 ? C8 MXF 301 A 1 HETATM 9 C C10 MXF . . . B 2 15.421 -5.384 4.7 1 26.17 ? C10 MXF 301 A 1 HETATM 10 C C11 MXF . . . B 2 12.915 -6.537 1.562 1 20.32 ? C11 MXF 301 A 1 HETATM 11 C C12 MXF . . . B 2 11.881 -6.022 2.568 1 26.02 ? C12 MXF 301 A 1 HETATM 12 C C13 MXF . . . B 2 12.787 -5.787 0.209 1 24.9 ? C13 MXF 301 A 1 HETATM 13 C C14 MXF . . . B 2 12.63 -4.263 0.408 1 24.57 ? C14 MXF 301 A 1 HETATM 14 C C15 MXF . . . B 2 11.618 -6.32 -0.616 1 30.87 ? C15 MXF 301 A 1 HETATM 15 C C16 MXF . . . B 2 10.842 -8.334 -1.463 1 61.87 ? C16 MXF 301 A 1 HETATM 16 N N1 MXF . . . B 2 14.895 -8.459 3.164 1 22.42 ? N1 MXF 301 A 1 HETATM 17 N N3 MXF . . . B 2 14.28 -6.381 2.074 1 18.08 ? N3 MXF 301 A 1 HETATM 18 N N4 MXF . . . B 2 11.228 -9.565 -1.851 1 52.72 ? N4 MXF 301 A 1 HETATM 19 O O1 MXF . . . B 2 15.3 -4.406 3.969 1 15.35 ? O1 MXF 301 A 1 HETATM 20 O O3 MXF . . . B 2 12.301 -5.283 3.48 1 17.88 ? O3 MXF 301 A 1 HETATM 21 O O4 MXF . . . B 2 10.696 -6.348 2.353 1 26.3 ? O4 MXF 301 A 1 HETATM 22 O O5 MXF . . . B 2 14.097 -5.587 -2.227 1 24.3 ? O5 MXF 301 A 1 HETATM 23 O O6 MXF . . . B 2 14.616 -7.652 -0.864 1 31.79 ? O6 MXF 301 A 1 HETATM 24 O O7 MXF . . . B 2 11.515 -7.721 -0.445 1 42.59 ? O7 MXF 301 A 1 HETATM 25 O O8 MXF . . . B 2 9.879 -7.771 -2 1 51.48 ? O8 MXF 301 A 1 HETATM 26 S S1 MXF . . . B 2 14.391 -6.116 -0.8 1 28.49 ? S1 MXF 301 A 1 HETATM 27 C C17 MXF . . . B 2 12.377 -10.274 -1.239 1 61.72 ? C17 MXF 301 A 1 HETATM 28 C C18 MXF . . . B 2 11.906 -11.592 -0.598 1 75.16 ? C18 MXF 301 A 1 HETATM 29 N N5 MXF . . . B 2 11.884 -11.526 0.877 1 61.42 ? N5 MXF 301 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 29 #