data_4GD8 # _model_server_result.job_id pbEp_Sui5xQXROCFh2jSQQ _model_server_result.datetime_utc '2024-11-15 20:51:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gd8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 4GD8 # _exptl.entry_id 4GD8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 508.6 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CYCLOHEXYL-HEXYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GD8 _cell.length_a 49.394 _cell.length_b 55.46 _cell.length_c 83.649 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GD8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 73 A CYS 77 1_555 A SG CYS 119 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 A OG SER 66 A SER 70 1_555 B C10 MXF . A MXF 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? # _chem_comp.formula 'C24 H44 O11' _chem_comp.formula_weight 508.6 _chem_comp.id MA4 _chem_comp.mon_nstd_flag . _chem_comp.name CYCLOHEXYL-HEXYL-BETA-D-MALTOSIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4GD8 _atom_sites.fract_transf_matrix[1][1] 0.020245 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018031 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011955 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MXF A 1 301 1 MXF DRG . C 3 MA4 A 1 302 600 MA4 MA4 . D 3 MA4 A 1 303 601 MA4 MA4 . E 4 HOH A 1 401 1 HOH HOH . E 4 HOH A 2 402 2 HOH HOH . E 4 HOH A 3 403 3 HOH HOH . E 4 HOH A 4 404 4 HOH HOH . E 4 HOH A 5 405 5 HOH HOH . E 4 HOH A 6 406 6 HOH HOH . E 4 HOH A 7 407 7 HOH HOH . E 4 HOH A 8 408 8 HOH HOH . E 4 HOH A 9 409 9 HOH HOH . E 4 HOH A 10 410 10 HOH HOH . E 4 HOH A 11 411 11 HOH HOH . E 4 HOH A 12 412 12 HOH HOH . E 4 HOH A 13 413 13 HOH HOH . E 4 HOH A 14 414 14 HOH HOH . E 4 HOH A 15 415 15 HOH HOH . E 4 HOH A 16 416 16 HOH HOH . E 4 HOH A 17 417 18 HOH HOH . E 4 HOH A 18 418 19 HOH HOH . E 4 HOH A 19 419 20 HOH HOH . E 4 HOH A 20 420 21 HOH HOH . E 4 HOH A 21 421 22 HOH HOH . E 4 HOH A 22 422 23 HOH HOH . E 4 HOH A 23 423 24 HOH HOH . E 4 HOH A 24 424 25 HOH HOH . E 4 HOH A 25 425 26 HOH HOH . E 4 HOH A 26 426 27 HOH HOH . E 4 HOH A 27 427 28 HOH HOH . E 4 HOH A 28 428 29 HOH HOH . E 4 HOH A 29 429 30 HOH HOH . E 4 HOH A 30 430 31 HOH HOH . E 4 HOH A 31 431 32 HOH HOH . E 4 HOH A 32 432 33 HOH HOH . E 4 HOH A 33 433 34 HOH HOH . E 4 HOH A 34 434 35 HOH HOH . E 4 HOH A 35 435 37 HOH HOH . E 4 HOH A 36 436 38 HOH HOH . E 4 HOH A 37 437 39 HOH HOH . E 4 HOH A 38 438 40 HOH HOH . E 4 HOH A 39 439 41 HOH HOH . E 4 HOH A 40 440 42 HOH HOH . E 4 HOH A 41 441 43 HOH HOH . E 4 HOH A 42 442 44 HOH HOH . E 4 HOH A 43 443 45 HOH HOH . E 4 HOH A 44 444 46 HOH HOH . E 4 HOH A 45 445 47 HOH HOH . E 4 HOH A 46 446 48 HOH HOH . E 4 HOH A 47 447 49 HOH HOH . E 4 HOH A 48 448 50 HOH HOH . E 4 HOH A 49 449 51 HOH HOH . E 4 HOH A 50 450 52 HOH HOH . E 4 HOH A 51 451 53 HOH HOH . E 4 HOH A 52 452 54 HOH HOH . E 4 HOH A 53 453 55 HOH HOH . E 4 HOH A 54 454 56 HOH HOH . E 4 HOH A 55 455 57 HOH HOH . E 4 HOH A 56 456 58 HOH HOH . E 4 HOH A 57 457 59 HOH HOH . E 4 HOH A 58 458 60 HOH HOH . E 4 HOH A 59 459 61 HOH HOH . E 4 HOH A 60 460 62 HOH HOH . E 4 HOH A 61 461 63 HOH HOH . E 4 HOH A 62 462 64 HOH HOH . E 4 HOH A 63 463 65 HOH HOH . E 4 HOH A 64 464 66 HOH HOH . E 4 HOH A 65 465 67 HOH HOH . E 4 HOH A 66 466 68 HOH HOH . E 4 HOH A 67 467 69 HOH HOH . E 4 HOH A 68 468 70 HOH HOH . E 4 HOH A 69 469 72 HOH HOH . E 4 HOH A 70 470 73 HOH HOH . E 4 HOH A 71 471 74 HOH HOH . E 4 HOH A 72 472 75 HOH HOH . E 4 HOH A 73 473 76 HOH HOH . E 4 HOH A 74 474 77 HOH HOH . E 4 HOH A 75 475 78 HOH HOH . E 4 HOH A 76 476 79 HOH HOH . E 4 HOH A 77 477 80 HOH HOH . E 4 HOH A 78 478 81 HOH HOH . E 4 HOH A 79 479 82 HOH HOH . E 4 HOH A 80 480 83 HOH HOH . E 4 HOH A 81 481 84 HOH HOH . E 4 HOH A 82 482 85 HOH HOH . E 4 HOH A 83 483 86 HOH HOH . E 4 HOH A 84 484 87 HOH HOH . E 4 HOH A 85 485 88 HOH HOH . E 4 HOH A 86 486 89 HOH HOH . E 4 HOH A 87 487 90 HOH HOH . E 4 HOH A 88 488 91 HOH HOH . E 4 HOH A 89 489 92 HOH HOH . E 4 HOH A 90 490 93 HOH HOH . E 4 HOH A 91 491 94 HOH HOH . E 4 HOH A 92 492 95 HOH HOH . E 4 HOH A 93 493 96 HOH HOH . E 4 HOH A 94 494 97 HOH HOH . E 4 HOH A 95 495 98 HOH HOH . E 4 HOH A 96 496 99 HOH HOH . E 4 HOH A 97 497 100 HOH HOH . E 4 HOH A 98 498 102 HOH HOH . E 4 HOH A 99 499 108 HOH HOH . E 4 HOH A 100 500 110 HOH HOH . E 4 HOH A 101 501 111 HOH HOH . E 4 HOH A 102 502 112 HOH HOH . E 4 HOH A 103 503 113 HOH HOH . E 4 HOH A 104 504 116 HOH HOH . E 4 HOH A 105 505 117 HOH HOH . E 4 HOH A 106 506 119 HOH HOH . E 4 HOH A 107 507 120 HOH HOH . E 4 HOH A 108 508 121 HOH HOH . E 4 HOH A 109 509 122 HOH HOH . E 4 HOH A 110 510 123 HOH HOH . E 4 HOH A 111 511 124 HOH HOH . E 4 HOH A 112 512 125 HOH HOH . E 4 HOH A 113 513 127 HOH HOH . E 4 HOH A 114 514 128 HOH HOH . E 4 HOH A 115 515 132 HOH HOH . E 4 HOH A 116 516 3 HOH HOH . E 4 HOH A 117 517 4 HOH HOH . E 4 HOH A 118 518 6 HOH HOH . E 4 HOH A 119 519 7 HOH HOH . E 4 HOH A 120 520 8 HOH HOH . E 4 HOH A 121 521 10 HOH HOH . E 4 HOH A 122 522 11 HOH HOH . E 4 HOH A 123 523 12 HOH HOH . E 4 HOH A 124 524 14 HOH HOH . E 4 HOH A 125 525 15 HOH HOH . E 4 HOH A 126 526 17 HOH HOH . E 4 HOH A 127 527 19 HOH HOH . E 4 HOH A 128 528 21 HOH HOH . E 4 HOH A 129 529 22 HOH HOH . E 4 HOH A 130 530 23 HOH HOH . E 4 HOH A 131 531 25 HOH HOH . E 4 HOH A 132 532 29 HOH HOH . E 4 HOH A 133 533 30 HOH HOH . E 4 HOH A 134 534 31 HOH HOH . E 4 HOH A 135 535 32 HOH HOH . E 4 HOH A 136 536 33 HOH HOH . E 4 HOH A 137 537 34 HOH HOH . E 4 HOH A 138 538 35 HOH HOH . E 4 HOH A 139 539 38 HOH HOH . E 4 HOH A 140 540 39 HOH HOH . E 4 HOH A 141 541 41 HOH HOH . E 4 HOH A 142 542 43 HOH HOH . E 4 HOH A 143 543 48 HOH HOH . E 4 HOH A 144 544 49 HOH HOH . E 4 HOH A 145 545 51 HOH HOH . E 4 HOH A 146 546 53 HOH HOH . E 4 HOH A 147 547 54 HOH HOH . E 4 HOH A 148 548 56 HOH HOH . E 4 HOH A 149 549 1 HOH HOH . E 4 HOH A 150 550 14 HOH HOH . E 4 HOH A 151 551 17 HOH HOH . E 4 HOH A 152 552 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MA4 . . . C 3 -11.043 2.459 2.473 1 19.28 ? C1 MA4 302 A 1 HETATM 2 C C2 MA4 . . . C 3 -11.646 3.078 1.215 1 19.82 ? C2 MA4 302 A 1 HETATM 3 C C3 MA4 . . . C 3 -11.224 4.538 1.125 1 16.8 ? C3 MA4 302 A 1 HETATM 4 C C4 MA4 . . . C 3 -11.549 5.328 2.382 1 17.59 ? C4 MA4 302 A 1 HETATM 5 C C5 MA4 . . . C 3 -11.005 4.577 3.619 1 16.66 ? C5 MA4 302 A 1 HETATM 6 C C6 MA4 . . . C 3 -11.403 5.26 4.903 1 16.58 ? C6 MA4 302 A 1 HETATM 7 O O2 MA4 . . . C 3 -11.029 2.436 0.108 1 18.16 ? O2 MA4 302 A 1 HETATM 8 O O3 MA4 . . . C 3 -11.856 5.069 -0.05 1 17.9 ? O3 MA4 302 A 1 HETATM 9 O O5 MA4 . . . C 3 -11.471 3.203 3.613 1 17.24 ? O5 MA4 302 A 1 HETATM 10 O O6 MA4 . . . C 3 -12.849 5.17 5.04 1 22.02 ? O6 MA4 302 A 1 HETATM 11 O O1 MA4 . . . C 3 -9.617 2.462 2.292 1 15.85 ? O1 MA4 302 A 1 HETATM 12 O O4 MA4 . . . C 3 -10.99 6.651 2.22 1 16.48 ? O4 MA4 302 A 1 HETATM 13 C C10 MA4 . . . C 3 -6.33 0.097 2.751 1 14.23 ? C10 MA4 302 A 1 HETATM 14 C C20 MA4 . . . C 3 -7.161 -0.213 1.509 1 19.45 ? C20 MA4 302 A 1 HETATM 15 C C30 MA4 . . . C 3 -8.074 0.996 1.279 1 19.68 ? C30 MA4 302 A 1 HETATM 16 C C40 MA4 . . . C 3 -8.942 1.217 2.508 1 14.05 ? C40 MA4 302 A 1 HETATM 17 C C50 MA4 . . . C 3 -8.086 1.391 3.761 1 15.12 ? C50 MA4 302 A 1 HETATM 18 C C60 MA4 . . . C 3 -8.856 1.549 5.059 1 20.4 ? C60 MA4 302 A 1 HETATM 19 O O10 MA4 . . . C 3 -5.438 -1 3.061 1 20.18 ? O10 MA4 302 A 1 HETATM 20 O O20 MA4 . . . C 3 -6.29 -0.402 0.391 1 22 ? O20 MA4 302 A 1 HETATM 21 O O30 MA4 . . . C 3 -8.904 0.796 0.137 1 22.14 ? O30 MA4 302 A 1 HETATM 22 O O50 MA4 . . . C 3 -7.183 0.275 3.901 1 20.55 ? O50 MA4 302 A 1 HETATM 23 O O60 MA4 . . . C 3 -9.766 0.444 5.172 1 24.08 ? O60 MA4 302 A 1 HETATM 24 C C11 MA4 . . . C 3 -4.453 -0.619 4.044 1 21.1 ? C11 MA4 302 A 1 HETATM 25 C C21 MA4 . . . C 3 -3.139 -0.503 3.304 1 18.78 ? C21 MA4 302 A 1 HETATM 26 C C31 MA4 . . . C 3 -2.005 -0.086 4.206 1 33.05 ? C31 MA4 302 A 1 HETATM 27 C C41 MA4 . . . C 3 -0.727 -0.681 3.637 1 37.65 ? C41 MA4 302 A 1 HETATM 28 C C51 MA4 . . . C 3 0.42 -0.52 4.619 1 31.05 ? C51 MA4 302 A 1 HETATM 29 C C61 MA4 . . . C 3 0.151 0.568 5.652 1 29.63 ? C61 MA4 302 A 1 HETATM 30 C C12 MA4 . . . C 3 1.492 0.923 6.265 1 39.25 ? C12 MA4 302 A 1 HETATM 31 C C22 MA4 . . . C 3 1.952 -0.291 7.084 1 23.53 ? C22 MA4 302 A 1 HETATM 32 C C32 MA4 . . . C 3 1.584 -0.228 8.542 1 16.11 ? C32 MA4 302 A 1 HETATM 33 C C42 MA4 . . . C 3 1.977 1.097 9.212 1 34.36 ? C42 MA4 302 A 1 HETATM 34 C C52 MA4 . . . C 3 2.322 2.232 8.249 1 28 ? C52 MA4 302 A 1 HETATM 35 C C62 MA4 . . . C 3 1.423 2.252 7.032 1 24.96 ? C62 MA4 302 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #