data_4GE1 # _model_server_result.job_id CgPb8A8mrJdyhaBY2Rz7Yg _model_server_result.datetime_utc '2024-11-24 11:17:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ge1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 4GE1 # _exptl.entry_id 4GE1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 160.216 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(1H-INDOL-3-YL)ETHANAMINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.45 _cell.angle_gamma 90 _cell.entry_id 4GE1 _cell.length_a 69.257 _cell.length_b 73.086 _cell.length_c 80.935 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GE1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,K 1 1 B,F,G,L 2 1 C,H,I,M 3 1 D,J,N 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 H N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 A CYS 4 1_555 A SG CYS 126 A CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 43 A CYS 42 1_555 A SG CYS 177 A CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 B SG CYS 5 B CYS 4 1_555 B SG CYS 126 B CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf4 B SG CYS 43 B CYS 42 1_555 B SG CYS 177 B CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 C SG CYS 5 C CYS 4 1_555 C SG CYS 126 C CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 C SG CYS 43 C CYS 42 1_555 C SG CYS 177 C CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf7 D SG CYS 5 D CYS 4 1_555 D SG CYS 126 D CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf8 D SG CYS 43 D CYS 42 1_555 D SG CYS 177 D CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? # _chem_comp.formula 'C10 H12 N2' _chem_comp.formula_weight 160.216 _chem_comp.id TSS _chem_comp.mon_nstd_flag . _chem_comp.name 2-(1H-INDOL-3-YL)ETHANAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms TRYPTAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA TSS sing 347 n n N1 HN11 TSS sing 348 n n N1 HN12 TSS sing 349 n n CA CB TSS sing 350 n n CA HA1 TSS sing 351 n n CA HA2 TSS sing 352 n n CB CG TSS sing 353 n n CB HB1 TSS sing 354 n n CB HB2 TSS sing 355 n n CG CD1 TSS doub 356 n y CG CD2 TSS sing 357 n y CD1 NE1 TSS sing 358 n y CD1 HD1 TSS sing 359 n n NE1 CE2 TSS sing 360 n y NE1 HE1 TSS sing 361 n n CE2 CD2 TSS sing 362 n y CE2 CZ2 TSS doub 363 n y CD2 CE3 TSS doub 364 n y CZ2 CH2 TSS sing 365 n y CZ2 HZ2 TSS sing 366 n n CH2 CZ3 TSS doub 367 n y CH2 HH2 TSS sing 368 n n CZ3 CE3 TSS sing 369 n y CZ3 HZ3 TSS sing 370 n n CE3 HE3 TSS sing 371 n n # _atom_sites.entry_id 4GE1 _atom_sites.fract_transf_matrix[1][1] 0.014439 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000365 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013683 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01236 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 TSS A 1 201 145 TSS TSS . F 2 TSS B 1 201 145 TSS TSS . G 3 GOL B 1 202 1 GOL GOL . H 2 TSS C 1 201 145 TSS TSS . I 3 GOL C 1 202 1 GOL GOL . J 2 TSS D 1 201 145 TSS TSS . K 4 HOH A 1 301 4 HOH HOH . K 4 HOH A 2 302 6 HOH HOH . K 4 HOH A 3 303 7 HOH HOH . K 4 HOH A 4 304 8 HOH HOH . K 4 HOH A 5 305 12 HOH HOH . K 4 HOH A 6 306 16 HOH HOH . K 4 HOH A 7 307 17 HOH HOH . K 4 HOH A 8 308 19 HOH HOH . K 4 HOH A 9 309 24 HOH HOH . K 4 HOH A 10 310 28 HOH HOH . K 4 HOH A 11 311 31 HOH HOH . K 4 HOH A 12 312 33 HOH HOH . K 4 HOH A 13 313 36 HOH HOH . K 4 HOH A 14 314 37 HOH HOH . K 4 HOH A 15 315 44 HOH HOH . K 4 HOH A 16 316 48 HOH HOH . K 4 HOH A 17 317 49 HOH HOH . K 4 HOH A 18 318 52 HOH HOH . K 4 HOH A 19 319 54 HOH HOH . K 4 HOH A 20 320 55 HOH HOH . K 4 HOH A 21 321 59 HOH HOH . K 4 HOH A 22 322 62 HOH HOH . K 4 HOH A 23 323 69 HOH HOH . K 4 HOH A 24 324 71 HOH HOH . K 4 HOH A 25 325 73 HOH HOH . K 4 HOH A 26 326 74 HOH HOH . K 4 HOH A 27 327 79 HOH HOH . K 4 HOH A 28 328 84 HOH HOH . K 4 HOH A 29 329 86 HOH HOH . K 4 HOH A 30 330 88 HOH HOH . K 4 HOH A 31 331 91 HOH HOH . K 4 HOH A 32 332 92 HOH HOH . K 4 HOH A 33 333 94 HOH HOH . K 4 HOH A 34 334 96 HOH HOH . K 4 HOH A 35 335 99 HOH HOH . K 4 HOH A 36 336 127 HOH HOH . K 4 HOH A 37 337 143 HOH HOH . K 4 HOH A 38 338 144 HOH HOH . K 4 HOH A 39 339 151 HOH HOH . K 4 HOH A 40 340 159 HOH HOH . K 4 HOH A 41 341 162 HOH HOH . K 4 HOH A 42 342 164 HOH HOH . K 4 HOH A 43 343 167 HOH HOH . K 4 HOH A 44 344 173 HOH HOH . K 4 HOH A 45 345 174 HOH HOH . K 4 HOH A 46 346 179 HOH HOH . K 4 HOH A 47 347 180 HOH HOH . L 4 HOH B 1 301 18 HOH HOH . L 4 HOH B 2 302 23 HOH HOH . L 4 HOH B 3 303 38 HOH HOH . L 4 HOH B 4 304 65 HOH HOH . L 4 HOH B 5 305 80 HOH HOH . L 4 HOH B 6 306 89 HOH HOH . L 4 HOH B 7 307 97 HOH HOH . L 4 HOH B 8 308 105 HOH HOH . L 4 HOH B 9 309 108 HOH HOH . L 4 HOH B 10 310 116 HOH HOH . L 4 HOH B 11 311 121 HOH HOH . L 4 HOH B 12 312 130 HOH HOH . L 4 HOH B 13 313 145 HOH HOH . L 4 HOH B 14 314 147 HOH HOH . L 4 HOH B 15 315 155 HOH HOH . L 4 HOH B 16 316 156 HOH HOH . L 4 HOH B 17 317 160 HOH HOH . L 4 HOH B 18 318 169 HOH HOH . L 4 HOH B 19 319 172 HOH HOH . M 4 HOH C 1 301 1 HOH HOH . M 4 HOH C 2 302 5 HOH HOH . M 4 HOH C 3 303 10 HOH HOH . M 4 HOH C 4 304 13 HOH HOH . M 4 HOH C 5 305 15 HOH HOH . M 4 HOH C 6 306 20 HOH HOH . M 4 HOH C 7 307 22 HOH HOH . M 4 HOH C 8 308 29 HOH HOH . M 4 HOH C 9 309 30 HOH HOH . M 4 HOH C 10 310 32 HOH HOH . M 4 HOH C 11 311 35 HOH HOH . M 4 HOH C 12 312 40 HOH HOH . M 4 HOH C 13 313 41 HOH HOH . M 4 HOH C 14 314 45 HOH HOH . M 4 HOH C 15 315 46 HOH HOH . M 4 HOH C 16 316 47 HOH HOH . M 4 HOH C 17 317 51 HOH HOH . M 4 HOH C 18 318 53 HOH HOH . M 4 HOH C 19 319 61 HOH HOH . M 4 HOH C 20 320 63 HOH HOH . M 4 HOH C 21 321 66 HOH HOH . M 4 HOH C 22 322 68 HOH HOH . M 4 HOH C 23 323 70 HOH HOH . M 4 HOH C 24 324 76 HOH HOH . M 4 HOH C 25 325 81 HOH HOH . M 4 HOH C 26 326 82 HOH HOH . M 4 HOH C 27 327 83 HOH HOH . M 4 HOH C 28 328 93 HOH HOH . M 4 HOH C 29 329 98 HOH HOH . M 4 HOH C 30 330 102 HOH HOH . M 4 HOH C 31 331 110 HOH HOH . M 4 HOH C 32 332 114 HOH HOH . M 4 HOH C 33 333 118 HOH HOH . M 4 HOH C 34 334 122 HOH HOH . M 4 HOH C 35 335 123 HOH HOH . M 4 HOH C 36 336 124 HOH HOH . M 4 HOH C 37 337 125 HOH HOH . M 4 HOH C 38 338 131 HOH HOH . M 4 HOH C 39 339 138 HOH HOH . M 4 HOH C 40 340 141 HOH HOH . M 4 HOH C 41 341 142 HOH HOH . M 4 HOH C 42 342 146 HOH HOH . M 4 HOH C 43 343 149 HOH HOH . M 4 HOH C 44 344 154 HOH HOH . M 4 HOH C 45 345 157 HOH HOH . M 4 HOH C 46 346 158 HOH HOH . M 4 HOH C 47 347 168 HOH HOH . M 4 HOH C 48 348 171 HOH HOH . M 4 HOH C 49 349 175 HOH HOH . M 4 HOH C 50 350 177 HOH HOH . M 4 HOH C 51 351 178 HOH HOH . N 4 HOH D 1 301 2 HOH HOH . N 4 HOH D 2 302 3 HOH HOH . N 4 HOH D 3 303 9 HOH HOH . N 4 HOH D 4 304 11 HOH HOH . N 4 HOH D 5 305 14 HOH HOH . N 4 HOH D 6 306 21 HOH HOH . N 4 HOH D 7 307 27 HOH HOH . N 4 HOH D 8 308 39 HOH HOH . N 4 HOH D 9 309 42 HOH HOH . N 4 HOH D 10 310 43 HOH HOH . N 4 HOH D 11 311 50 HOH HOH . N 4 HOH D 12 312 56 HOH HOH . N 4 HOH D 13 313 57 HOH HOH . N 4 HOH D 14 314 58 HOH HOH . N 4 HOH D 15 315 60 HOH HOH . N 4 HOH D 16 316 64 HOH HOH . N 4 HOH D 17 317 67 HOH HOH . N 4 HOH D 18 318 72 HOH HOH . N 4 HOH D 19 319 75 HOH HOH . N 4 HOH D 20 320 77 HOH HOH . N 4 HOH D 21 321 78 HOH HOH . N 4 HOH D 22 322 85 HOH HOH . N 4 HOH D 23 323 87 HOH HOH . N 4 HOH D 24 324 90 HOH HOH . N 4 HOH D 25 325 95 HOH HOH . N 4 HOH D 26 326 100 HOH HOH . N 4 HOH D 27 327 101 HOH HOH . N 4 HOH D 28 328 103 HOH HOH . N 4 HOH D 29 329 104 HOH HOH . N 4 HOH D 30 330 106 HOH HOH . N 4 HOH D 31 331 107 HOH HOH . N 4 HOH D 32 332 109 HOH HOH . N 4 HOH D 33 333 111 HOH HOH . N 4 HOH D 34 334 112 HOH HOH . N 4 HOH D 35 335 113 HOH HOH . N 4 HOH D 36 336 115 HOH HOH . N 4 HOH D 37 337 117 HOH HOH . N 4 HOH D 38 338 119 HOH HOH . N 4 HOH D 39 339 120 HOH HOH . N 4 HOH D 40 340 126 HOH HOH . N 4 HOH D 41 341 128 HOH HOH . N 4 HOH D 42 342 129 HOH HOH . N 4 HOH D 43 343 132 HOH HOH . N 4 HOH D 44 344 133 HOH HOH . N 4 HOH D 45 345 134 HOH HOH . N 4 HOH D 46 346 135 HOH HOH . N 4 HOH D 47 347 136 HOH HOH . N 4 HOH D 48 348 137 HOH HOH . N 4 HOH D 49 349 139 HOH HOH . N 4 HOH D 50 350 140 HOH HOH . N 4 HOH D 51 351 148 HOH HOH . N 4 HOH D 52 352 150 HOH HOH . N 4 HOH D 53 353 153 HOH HOH . N 4 HOH D 54 354 161 HOH HOH . N 4 HOH D 55 355 163 HOH HOH . N 4 HOH D 56 356 165 HOH HOH . N 4 HOH D 57 357 166 HOH HOH . N 4 HOH D 58 358 176 HOH HOH . N 4 HOH D 59 359 181 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 TSS . . . E 2 4.858 6.131 46.683 1 34.81 ? N1 TSS 201 A 1 HETATM 2 C CA TSS . . . E 2 6.16 5.569 46.417 1 33.03 ? CA TSS 201 A 1 HETATM 3 C CB TSS . . . E 2 6.897 4.979 47.578 1 28.36 ? CB TSS 201 A 1 HETATM 4 C CG TSS . . . E 2 6.101 4.242 48.608 1 22.27 ? CG TSS 201 A 1 HETATM 5 C CD1 TSS . . . E 2 5.852 4.653 49.91 1 26.25 ? CD1 TSS 201 A 1 HETATM 6 N NE1 TSS . . . E 2 5.112 3.715 50.537 1 28.66 ? NE1 TSS 201 A 1 HETATM 7 C CE2 TSS . . . E 2 4.849 2.68 49.663 1 29.18 ? CE2 TSS 201 A 1 HETATM 8 C CD2 TSS . . . E 2 5.452 2.977 48.467 1 23.34 ? CD2 TSS 201 A 1 HETATM 9 C CZ2 TSS . . . E 2 4.112 1.474 49.817 1 31.48 ? CZ2 TSS 201 A 1 HETATM 10 C CH2 TSS . . . E 2 4.011 0.58 48.755 1 29.68 ? CH2 TSS 201 A 1 HETATM 11 C CZ3 TSS . . . E 2 4.626 0.882 47.538 1 33.62 ? CZ3 TSS 201 A 1 HETATM 12 C CE3 TSS . . . E 2 5.345 2.073 47.385 1 23.18 ? CE3 TSS 201 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 435 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #