data_4GE1
#
_model_server_result.job_id            kwsBpQGRSdfMZsOnyC3PKQ 
_model_server_result.datetime_utc      '2024-11-24 10:52:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ge1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":202}' 
#
_entry.id    4GE1 
#
_exptl.entry_id    4GE1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.45 
_cell.angle_gamma         90 
_cell.entry_id            4GE1 
_cell.length_a            69.257 
_cell.length_b            73.086 
_cell.length_c            80.935 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4GE1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,K 1 1 
B,F,G,L 2 1 
C,H,I,M 3 1 
D,J,N 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 5 A CYS 4 1_555 A SG CYS 126 A CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf2 A SG CYS 43 A CYS 42 1_555 A SG CYS 177 A CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 B SG CYS 5 B CYS 4 1_555 B SG CYS 126 B CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf4 B SG CYS 43 B CYS 42 1_555 B SG CYS 177 B CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf5 C SG CYS 5 C CYS 4 1_555 C SG CYS 126 C CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf6 C SG CYS 43 C CYS 42 1_555 C SG CYS 177 C CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf7 D SG CYS 5 D CYS 4 1_555 D SG CYS 126 D CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf8 D SG CYS 43 D CYS 42 1_555 D SG CYS 177 D CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4GE1 
_atom_sites.fract_transf_matrix[1][1]    0.014439 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000365 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013683 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01236 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 TSS A 1 201 145 TSS TSS . 
F 2 TSS B 1 201 145 TSS TSS . 
G 3 GOL B 1 202 1 GOL GOL . 
H 2 TSS C 1 201 145 TSS TSS . 
I 3 GOL C 1 202 1 GOL GOL . 
J 2 TSS D 1 201 145 TSS TSS . 
K 4 HOH A 1 301 4 HOH HOH . 
K 4 HOH A 2 302 6 HOH HOH . 
K 4 HOH A 3 303 7 HOH HOH . 
K 4 HOH A 4 304 8 HOH HOH . 
K 4 HOH A 5 305 12 HOH HOH . 
K 4 HOH A 6 306 16 HOH HOH . 
K 4 HOH A 7 307 17 HOH HOH . 
K 4 HOH A 8 308 19 HOH HOH . 
K 4 HOH A 9 309 24 HOH HOH . 
K 4 HOH A 10 310 28 HOH HOH . 
K 4 HOH A 11 311 31 HOH HOH . 
K 4 HOH A 12 312 33 HOH HOH . 
K 4 HOH A 13 313 36 HOH HOH . 
K 4 HOH A 14 314 37 HOH HOH . 
K 4 HOH A 15 315 44 HOH HOH . 
K 4 HOH A 16 316 48 HOH HOH . 
K 4 HOH A 17 317 49 HOH HOH . 
K 4 HOH A 18 318 52 HOH HOH . 
K 4 HOH A 19 319 54 HOH HOH . 
K 4 HOH A 20 320 55 HOH HOH . 
K 4 HOH A 21 321 59 HOH HOH . 
K 4 HOH A 22 322 62 HOH HOH . 
K 4 HOH A 23 323 69 HOH HOH . 
K 4 HOH A 24 324 71 HOH HOH . 
K 4 HOH A 25 325 73 HOH HOH . 
K 4 HOH A 26 326 74 HOH HOH . 
K 4 HOH A 27 327 79 HOH HOH . 
K 4 HOH A 28 328 84 HOH HOH . 
K 4 HOH A 29 329 86 HOH HOH . 
K 4 HOH A 30 330 88 HOH HOH . 
K 4 HOH A 31 331 91 HOH HOH . 
K 4 HOH A 32 332 92 HOH HOH . 
K 4 HOH A 33 333 94 HOH HOH . 
K 4 HOH A 34 334 96 HOH HOH . 
K 4 HOH A 35 335 99 HOH HOH . 
K 4 HOH A 36 336 127 HOH HOH . 
K 4 HOH A 37 337 143 HOH HOH . 
K 4 HOH A 38 338 144 HOH HOH . 
K 4 HOH A 39 339 151 HOH HOH . 
K 4 HOH A 40 340 159 HOH HOH . 
K 4 HOH A 41 341 162 HOH HOH . 
K 4 HOH A 42 342 164 HOH HOH . 
K 4 HOH A 43 343 167 HOH HOH . 
K 4 HOH A 44 344 173 HOH HOH . 
K 4 HOH A 45 345 174 HOH HOH . 
K 4 HOH A 46 346 179 HOH HOH . 
K 4 HOH A 47 347 180 HOH HOH . 
L 4 HOH B 1 301 18 HOH HOH . 
L 4 HOH B 2 302 23 HOH HOH . 
L 4 HOH B 3 303 38 HOH HOH . 
L 4 HOH B 4 304 65 HOH HOH . 
L 4 HOH B 5 305 80 HOH HOH . 
L 4 HOH B 6 306 89 HOH HOH . 
L 4 HOH B 7 307 97 HOH HOH . 
L 4 HOH B 8 308 105 HOH HOH . 
L 4 HOH B 9 309 108 HOH HOH . 
L 4 HOH B 10 310 116 HOH HOH . 
L 4 HOH B 11 311 121 HOH HOH . 
L 4 HOH B 12 312 130 HOH HOH . 
L 4 HOH B 13 313 145 HOH HOH . 
L 4 HOH B 14 314 147 HOH HOH . 
L 4 HOH B 15 315 155 HOH HOH . 
L 4 HOH B 16 316 156 HOH HOH . 
L 4 HOH B 17 317 160 HOH HOH . 
L 4 HOH B 18 318 169 HOH HOH . 
L 4 HOH B 19 319 172 HOH HOH . 
M 4 HOH C 1 301 1 HOH HOH . 
M 4 HOH C 2 302 5 HOH HOH . 
M 4 HOH C 3 303 10 HOH HOH . 
M 4 HOH C 4 304 13 HOH HOH . 
M 4 HOH C 5 305 15 HOH HOH . 
M 4 HOH C 6 306 20 HOH HOH . 
M 4 HOH C 7 307 22 HOH HOH . 
M 4 HOH C 8 308 29 HOH HOH . 
M 4 HOH C 9 309 30 HOH HOH . 
M 4 HOH C 10 310 32 HOH HOH . 
M 4 HOH C 11 311 35 HOH HOH . 
M 4 HOH C 12 312 40 HOH HOH . 
M 4 HOH C 13 313 41 HOH HOH . 
M 4 HOH C 14 314 45 HOH HOH . 
M 4 HOH C 15 315 46 HOH HOH . 
M 4 HOH C 16 316 47 HOH HOH . 
M 4 HOH C 17 317 51 HOH HOH . 
M 4 HOH C 18 318 53 HOH HOH . 
M 4 HOH C 19 319 61 HOH HOH . 
M 4 HOH C 20 320 63 HOH HOH . 
M 4 HOH C 21 321 66 HOH HOH . 
M 4 HOH C 22 322 68 HOH HOH . 
M 4 HOH C 23 323 70 HOH HOH . 
M 4 HOH C 24 324 76 HOH HOH . 
M 4 HOH C 25 325 81 HOH HOH . 
M 4 HOH C 26 326 82 HOH HOH . 
M 4 HOH C 27 327 83 HOH HOH . 
M 4 HOH C 28 328 93 HOH HOH . 
M 4 HOH C 29 329 98 HOH HOH . 
M 4 HOH C 30 330 102 HOH HOH . 
M 4 HOH C 31 331 110 HOH HOH . 
M 4 HOH C 32 332 114 HOH HOH . 
M 4 HOH C 33 333 118 HOH HOH . 
M 4 HOH C 34 334 122 HOH HOH . 
M 4 HOH C 35 335 123 HOH HOH . 
M 4 HOH C 36 336 124 HOH HOH . 
M 4 HOH C 37 337 125 HOH HOH . 
M 4 HOH C 38 338 131 HOH HOH . 
M 4 HOH C 39 339 138 HOH HOH . 
M 4 HOH C 40 340 141 HOH HOH . 
M 4 HOH C 41 341 142 HOH HOH . 
M 4 HOH C 42 342 146 HOH HOH . 
M 4 HOH C 43 343 149 HOH HOH . 
M 4 HOH C 44 344 154 HOH HOH . 
M 4 HOH C 45 345 157 HOH HOH . 
M 4 HOH C 46 346 158 HOH HOH . 
M 4 HOH C 47 347 168 HOH HOH . 
M 4 HOH C 48 348 171 HOH HOH . 
M 4 HOH C 49 349 175 HOH HOH . 
M 4 HOH C 50 350 177 HOH HOH . 
M 4 HOH C 51 351 178 HOH HOH . 
N 4 HOH D 1 301 2 HOH HOH . 
N 4 HOH D 2 302 3 HOH HOH . 
N 4 HOH D 3 303 9 HOH HOH . 
N 4 HOH D 4 304 11 HOH HOH . 
N 4 HOH D 5 305 14 HOH HOH . 
N 4 HOH D 6 306 21 HOH HOH . 
N 4 HOH D 7 307 27 HOH HOH . 
N 4 HOH D 8 308 39 HOH HOH . 
N 4 HOH D 9 309 42 HOH HOH . 
N 4 HOH D 10 310 43 HOH HOH . 
N 4 HOH D 11 311 50 HOH HOH . 
N 4 HOH D 12 312 56 HOH HOH . 
N 4 HOH D 13 313 57 HOH HOH . 
N 4 HOH D 14 314 58 HOH HOH . 
N 4 HOH D 15 315 60 HOH HOH . 
N 4 HOH D 16 316 64 HOH HOH . 
N 4 HOH D 17 317 67 HOH HOH . 
N 4 HOH D 18 318 72 HOH HOH . 
N 4 HOH D 19 319 75 HOH HOH . 
N 4 HOH D 20 320 77 HOH HOH . 
N 4 HOH D 21 321 78 HOH HOH . 
N 4 HOH D 22 322 85 HOH HOH . 
N 4 HOH D 23 323 87 HOH HOH . 
N 4 HOH D 24 324 90 HOH HOH . 
N 4 HOH D 25 325 95 HOH HOH . 
N 4 HOH D 26 326 100 HOH HOH . 
N 4 HOH D 27 327 101 HOH HOH . 
N 4 HOH D 28 328 103 HOH HOH . 
N 4 HOH D 29 329 104 HOH HOH . 
N 4 HOH D 30 330 106 HOH HOH . 
N 4 HOH D 31 331 107 HOH HOH . 
N 4 HOH D 32 332 109 HOH HOH . 
N 4 HOH D 33 333 111 HOH HOH . 
N 4 HOH D 34 334 112 HOH HOH . 
N 4 HOH D 35 335 113 HOH HOH . 
N 4 HOH D 36 336 115 HOH HOH . 
N 4 HOH D 37 337 117 HOH HOH . 
N 4 HOH D 38 338 119 HOH HOH . 
N 4 HOH D 39 339 120 HOH HOH . 
N 4 HOH D 40 340 126 HOH HOH . 
N 4 HOH D 41 341 128 HOH HOH . 
N 4 HOH D 42 342 129 HOH HOH . 
N 4 HOH D 43 343 132 HOH HOH . 
N 4 HOH D 44 344 133 HOH HOH . 
N 4 HOH D 45 345 134 HOH HOH . 
N 4 HOH D 46 346 135 HOH HOH . 
N 4 HOH D 47 347 136 HOH HOH . 
N 4 HOH D 48 348 137 HOH HOH . 
N 4 HOH D 49 349 139 HOH HOH . 
N 4 HOH D 50 350 140 HOH HOH . 
N 4 HOH D 51 351 148 HOH HOH . 
N 4 HOH D 52 352 150 HOH HOH . 
N 4 HOH D 53 353 153 HOH HOH . 
N 4 HOH D 54 354 161 HOH HOH . 
N 4 HOH D 55 355 163 HOH HOH . 
N 4 HOH D 56 356 165 HOH HOH . 
N 4 HOH D 57 357 166 HOH HOH . 
N 4 HOH D 58 358 176 HOH HOH . 
N 4 HOH D 59 359 181 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . I 3 28.452 -15.327 24.751 1 56.78 ? C1 GOL 202 C 1 
HETATM 2 O O1 GOL . . . I 3 28.744 -13.939 24.902 1 39.82 ? O1 GOL 202 C 1 
HETATM 3 C C2 GOL . . . I 3 28.732 -16.204 25.986 1 43.54 ? C2 GOL 202 C 1 
HETATM 4 O O2 GOL . . . I 3 29.713 -15.592 26.796 1 67.03 ? O2 GOL 202 C 1 
HETATM 5 C C3 GOL . . . I 3 29.227 -17.618 25.633 1 51.39 ? C3 GOL 202 C 1 
HETATM 6 O O3 GOL . . . I 3 28.308 -18.448 24.937 1 34.99 ? O3 GOL 202 C 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#