data_4GEE # _model_server_result.job_id MUOahkXBl9BI88MZcCkFIw _model_server_result.datetime_utc '2024-11-16 12:40:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gee # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4GEE # _exptl.entry_id 4GEE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 371.824 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,5S,6s)-3-[5-chloro-6-ethyl-2-(pyrimidin-5-yloxy)-7H-pyrrolo[2,3-d]pyrimidin-4-yl]-3-azabicyclo[3.1.0]hexan-6-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GEE _cell.length_a 54.93 _cell.length_b 58.08 _cell.length_c 66.25 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GEE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H18 Cl N7 O' _chem_comp.formula_weight 371.824 _chem_comp.id 0WT _chem_comp.mon_nstd_flag . _chem_comp.name (1R,5S,6s)-3-[5-chloro-6-ethyl-2-(pyrimidin-5-yloxy)-7H-pyrrolo[2,3-d]pyrimidin-4-yl]-3-azabicyclo[3.1.0]hexan-6-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N23 C24 0WT doub 1 n y N23 C22 0WT sing 2 n y C24 N25 0WT sing 3 n y N25 C26 0WT doub 4 n y C22 C21 0WT doub 5 n y C26 C21 0WT sing 6 n y C21 O20 0WT sing 7 n n N19 C18 0WT sing 8 n n O20 C8 0WT sing 9 n n C18 C16 0WT sing 10 n n C18 C15 0WT sing 11 n n C16 C17 0WT sing 12 n n C16 C15 0WT sing 13 n n C8 N7 0WT doub 14 n y C8 N9 0WT sing 15 n y N7 C6 0WT sing 16 n y C17 N13 0WT sing 17 n n N9 C2 0WT doub 18 n y C15 C14 0WT sing 19 n n C6 N13 0WT sing 20 n n C6 C3 0WT doub 21 n y N13 C14 0WT sing 22 n n C2 C3 0WT sing 23 n y C2 N1 0WT sing 24 n y C3 C4 0WT sing 25 n y N1 C5 0WT sing 26 n y C4 C5 0WT doub 27 n y C4 CL1 0WT sing 28 n n C5 C10 0WT sing 29 n n C10 C11 0WT sing 30 n n C10 H1 0WT sing 31 n n C10 H2 0WT sing 32 n n C11 H3 0WT sing 33 n n C11 H4 0WT sing 34 n n C11 H5 0WT sing 35 n n N1 H6 0WT sing 36 n n C17 H7 0WT sing 37 n n C17 H8 0WT sing 38 n n C16 H9 0WT sing 39 n n C18 H10 0WT sing 40 n n N19 H11 0WT sing 41 n n N19 H12 0WT sing 42 n n C15 H14 0WT sing 43 n n C14 H15 0WT sing 44 n n C14 H16 0WT sing 45 n n C26 H17 0WT sing 46 n n C24 H18 0WT sing 47 n n C22 H19 0WT sing 48 n n # _atom_sites.entry_id 4GEE _atom_sites.fract_transf_matrix[1][1] 0.018205 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017218 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015094 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0WT A 1 301 1 0WT ZIP . C 3 GOL A 1 302 1 GOL GOL . D 4 HOH A 1 401 1 HOH HOH . D 4 HOH A 2 402 2 HOH HOH . D 4 HOH A 3 403 3 HOH HOH . D 4 HOH A 4 404 4 HOH HOH . D 4 HOH A 5 405 5 HOH HOH . D 4 HOH A 6 406 6 HOH HOH . D 4 HOH A 7 407 7 HOH HOH . D 4 HOH A 8 408 8 HOH HOH . D 4 HOH A 9 409 9 HOH HOH . D 4 HOH A 10 410 10 HOH HOH . D 4 HOH A 11 411 11 HOH HOH . D 4 HOH A 12 412 12 HOH HOH . D 4 HOH A 13 413 13 HOH HOH . D 4 HOH A 14 414 14 HOH HOH . D 4 HOH A 15 415 15 HOH HOH . D 4 HOH A 16 416 16 HOH HOH . D 4 HOH A 17 417 17 HOH HOH . D 4 HOH A 18 418 18 HOH HOH . D 4 HOH A 19 419 19 HOH HOH . D 4 HOH A 20 420 20 HOH HOH . D 4 HOH A 21 421 21 HOH HOH . D 4 HOH A 22 422 22 HOH HOH . D 4 HOH A 23 423 23 HOH HOH . D 4 HOH A 24 424 24 HOH HOH . D 4 HOH A 25 425 25 HOH HOH . D 4 HOH A 26 426 26 HOH HOH . D 4 HOH A 27 427 27 HOH HOH . D 4 HOH A 28 428 28 HOH HOH . D 4 HOH A 29 429 29 HOH HOH . D 4 HOH A 30 430 30 HOH HOH . D 4 HOH A 31 431 31 HOH HOH . D 4 HOH A 32 432 32 HOH HOH . D 4 HOH A 33 433 33 HOH HOH . D 4 HOH A 34 434 34 HOH HOH . D 4 HOH A 35 435 35 HOH HOH . D 4 HOH A 36 436 36 HOH HOH . D 4 HOH A 37 437 37 HOH HOH . D 4 HOH A 38 438 38 HOH HOH . D 4 HOH A 39 439 39 HOH HOH . D 4 HOH A 40 440 40 HOH HOH . D 4 HOH A 41 441 41 HOH HOH . D 4 HOH A 42 442 42 HOH HOH . D 4 HOH A 43 443 43 HOH HOH . D 4 HOH A 44 444 44 HOH HOH . D 4 HOH A 45 445 45 HOH HOH . D 4 HOH A 46 446 46 HOH HOH . D 4 HOH A 47 447 47 HOH HOH . D 4 HOH A 48 448 48 HOH HOH . D 4 HOH A 49 449 49 HOH HOH . D 4 HOH A 50 450 50 HOH HOH . D 4 HOH A 51 451 51 HOH HOH . D 4 HOH A 52 452 52 HOH HOH . D 4 HOH A 53 453 53 HOH HOH . D 4 HOH A 54 454 54 HOH HOH . D 4 HOH A 55 455 55 HOH HOH . D 4 HOH A 56 456 56 HOH HOH . D 4 HOH A 57 457 57 HOH HOH . D 4 HOH A 58 458 58 HOH HOH . D 4 HOH A 59 459 59 HOH HOH . D 4 HOH A 60 460 60 HOH HOH . D 4 HOH A 61 461 61 HOH HOH . D 4 HOH A 62 462 62 HOH HOH . D 4 HOH A 63 463 63 HOH HOH . D 4 HOH A 64 464 64 HOH HOH . D 4 HOH A 65 465 65 HOH HOH . D 4 HOH A 66 466 66 HOH HOH . D 4 HOH A 67 467 67 HOH HOH . D 4 HOH A 68 468 68 HOH HOH . D 4 HOH A 69 469 69 HOH HOH . D 4 HOH A 70 470 70 HOH HOH . D 4 HOH A 71 471 71 HOH HOH . D 4 HOH A 72 472 72 HOH HOH . D 4 HOH A 73 473 73 HOH HOH . D 4 HOH A 74 474 74 HOH HOH . D 4 HOH A 75 475 75 HOH HOH . D 4 HOH A 76 476 76 HOH HOH . D 4 HOH A 77 477 77 HOH HOH . D 4 HOH A 78 478 78 HOH HOH . D 4 HOH A 79 479 79 HOH HOH . D 4 HOH A 80 480 80 HOH HOH . D 4 HOH A 81 481 81 HOH HOH . D 4 HOH A 82 482 82 HOH HOH . D 4 HOH A 83 483 83 HOH HOH . D 4 HOH A 84 484 84 HOH HOH . D 4 HOH A 85 485 85 HOH HOH . D 4 HOH A 86 486 86 HOH HOH . D 4 HOH A 87 487 87 HOH HOH . D 4 HOH A 88 488 88 HOH HOH . D 4 HOH A 89 489 89 HOH HOH . D 4 HOH A 90 490 90 HOH HOH . D 4 HOH A 91 491 91 HOH HOH . D 4 HOH A 92 492 92 HOH HOH . D 4 HOH A 93 493 93 HOH HOH . D 4 HOH A 94 494 94 HOH HOH . D 4 HOH A 95 495 95 HOH HOH . D 4 HOH A 96 496 96 HOH HOH . D 4 HOH A 97 497 97 HOH HOH . D 4 HOH A 98 498 98 HOH HOH . D 4 HOH A 99 499 99 HOH HOH . D 4 HOH A 100 500 100 HOH HOH . D 4 HOH A 101 501 101 HOH HOH . D 4 HOH A 102 502 102 HOH HOH . D 4 HOH A 103 503 103 HOH HOH . D 4 HOH A 104 504 104 HOH HOH . D 4 HOH A 105 505 105 HOH HOH . D 4 HOH A 106 506 106 HOH HOH . D 4 HOH A 107 507 107 HOH HOH . D 4 HOH A 108 508 108 HOH HOH . D 4 HOH A 109 509 109 HOH HOH . D 4 HOH A 110 510 110 HOH HOH . D 4 HOH A 111 511 111 HOH HOH . D 4 HOH A 112 512 112 HOH HOH . D 4 HOH A 113 513 113 HOH HOH . D 4 HOH A 114 514 114 HOH HOH . D 4 HOH A 115 515 115 HOH HOH . D 4 HOH A 116 516 116 HOH HOH . D 4 HOH A 117 517 117 HOH HOH . D 4 HOH A 118 518 118 HOH HOH . D 4 HOH A 119 519 119 HOH HOH . D 4 HOH A 120 520 120 HOH HOH . D 4 HOH A 121 521 121 HOH HOH . D 4 HOH A 122 522 122 HOH HOH . D 4 HOH A 123 523 123 HOH HOH . D 4 HOH A 124 524 124 HOH HOH . D 4 HOH A 125 525 125 HOH HOH . D 4 HOH A 126 526 126 HOH HOH . D 4 HOH A 127 527 127 HOH HOH . D 4 HOH A 128 528 128 HOH HOH . D 4 HOH A 129 529 129 HOH HOH . D 4 HOH A 130 530 130 HOH HOH . D 4 HOH A 131 531 131 HOH HOH . D 4 HOH A 132 532 132 HOH HOH . D 4 HOH A 133 533 133 HOH HOH . D 4 HOH A 134 534 134 HOH HOH . D 4 HOH A 135 535 135 HOH HOH . D 4 HOH A 136 536 136 HOH HOH . D 4 HOH A 137 537 137 HOH HOH . D 4 HOH A 138 538 138 HOH HOH . D 4 HOH A 139 539 139 HOH HOH . D 4 HOH A 140 540 140 HOH HOH . D 4 HOH A 141 541 141 HOH HOH . D 4 HOH A 142 542 142 HOH HOH . D 4 HOH A 143 543 143 HOH HOH . D 4 HOH A 144 544 144 HOH HOH . D 4 HOH A 145 545 145 HOH HOH . D 4 HOH A 146 546 146 HOH HOH . D 4 HOH A 147 547 147 HOH HOH . D 4 HOH A 148 548 148 HOH HOH . D 4 HOH A 149 549 149 HOH HOH . D 4 HOH A 150 550 150 HOH HOH . D 4 HOH A 151 551 151 HOH HOH . D 4 HOH A 152 552 152 HOH HOH . D 4 HOH A 153 553 153 HOH HOH . D 4 HOH A 154 554 154 HOH HOH . D 4 HOH A 155 555 155 HOH HOH . D 4 HOH A 156 556 156 HOH HOH . D 4 HOH A 157 557 157 HOH HOH . D 4 HOH A 158 558 158 HOH HOH . D 4 HOH A 159 559 159 HOH HOH . D 4 HOH A 160 560 160 HOH HOH . D 4 HOH A 161 561 161 HOH HOH . D 4 HOH A 162 562 162 HOH HOH . D 4 HOH A 163 563 163 HOH HOH . D 4 HOH A 164 564 164 HOH HOH . D 4 HOH A 165 565 165 HOH HOH . D 4 HOH A 166 566 166 HOH HOH . D 4 HOH A 167 567 167 HOH HOH . D 4 HOH A 168 568 168 HOH HOH . D 4 HOH A 169 569 169 HOH HOH . D 4 HOH A 170 570 170 HOH HOH . D 4 HOH A 171 571 171 HOH HOH . D 4 HOH A 172 572 172 HOH HOH . D 4 HOH A 173 573 173 HOH HOH . D 4 HOH A 174 574 174 HOH HOH . D 4 HOH A 175 575 175 HOH HOH . D 4 HOH A 176 576 176 HOH HOH . D 4 HOH A 177 577 177 HOH HOH . D 4 HOH A 178 578 178 HOH HOH . D 4 HOH A 179 579 179 HOH HOH . D 4 HOH A 180 580 180 HOH HOH . D 4 HOH A 181 581 181 HOH HOH . D 4 HOH A 182 582 182 HOH HOH . D 4 HOH A 183 583 183 HOH HOH . D 4 HOH A 184 584 184 HOH HOH . D 4 HOH A 185 585 185 HOH HOH . D 4 HOH A 186 586 186 HOH HOH . D 4 HOH A 187 587 187 HOH HOH . D 4 HOH A 188 588 188 HOH HOH . D 4 HOH A 189 589 189 HOH HOH . D 4 HOH A 190 590 190 HOH HOH . D 4 HOH A 191 591 191 HOH HOH . D 4 HOH A 192 592 192 HOH HOH . D 4 HOH A 193 593 193 HOH HOH . D 4 HOH A 194 594 194 HOH HOH . D 4 HOH A 195 595 195 HOH HOH . D 4 HOH A 196 596 196 HOH HOH . D 4 HOH A 197 597 197 HOH HOH . D 4 HOH A 198 598 198 HOH HOH . D 4 HOH A 199 599 199 HOH HOH . D 4 HOH A 200 600 200 HOH HOH . D 4 HOH A 201 601 201 HOH HOH . D 4 HOH A 202 602 202 HOH HOH . D 4 HOH A 203 603 203 HOH HOH . D 4 HOH A 204 604 204 HOH HOH . D 4 HOH A 205 605 205 HOH HOH . D 4 HOH A 206 606 206 HOH HOH . D 4 HOH A 207 607 207 HOH HOH . D 4 HOH A 208 608 208 HOH HOH . D 4 HOH A 209 609 209 HOH HOH . D 4 HOH A 210 610 210 HOH HOH . D 4 HOH A 211 611 211 HOH HOH . D 4 HOH A 212 612 212 HOH HOH . D 4 HOH A 213 613 213 HOH HOH . D 4 HOH A 214 614 214 HOH HOH . D 4 HOH A 215 615 215 HOH HOH . D 4 HOH A 216 616 216 HOH HOH . D 4 HOH A 217 617 217 HOH HOH . D 4 HOH A 218 618 218 HOH HOH . D 4 HOH A 219 619 219 HOH HOH . D 4 HOH A 220 620 220 HOH HOH . D 4 HOH A 221 621 221 HOH HOH . D 4 HOH A 222 622 222 HOH HOH . D 4 HOH A 223 623 223 HOH HOH . D 4 HOH A 224 624 224 HOH HOH . D 4 HOH A 225 625 225 HOH HOH . D 4 HOH A 226 626 226 HOH HOH . D 4 HOH A 227 627 227 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL1 0WT . . . B 2 -10.371 -2.049 -11.409 1 16.86 ? CL1 0WT 301 A 1 HETATM 2 C C4 0WT . . . B 2 -11.491 -3.18 -12.309 1 16 ? C4 0WT 301 A 1 HETATM 3 C C5 0WT . . . B 2 -12.909 -3.29 -11.955 1 15.62 ? C5 0WT 301 A 1 HETATM 4 C C10 0WT . . . B 2 -13.641 -2.506 -10.895 1 15.3 ? C10 0WT 301 A 1 HETATM 5 C C11 0WT . . . B 2 -14.697 -3.341 -10.208 1 14.58 ? C11 0WT 301 A 1 HETATM 6 N N1 0WT . . . B 2 -13.402 -4.231 -12.788 1 15.6 ? N1 0WT 301 A 1 HETATM 7 C C3 0WT . . . B 2 -11.136 -4.105 -13.393 1 16.04 ? C3 0WT 301 A 1 HETATM 8 C C6 0WT . . . B 2 -9.979 -4.558 -14.232 1 17.02 ? C6 0WT 301 A 1 HETATM 9 N N13 0WT . . . B 2 -8.664 -4.066 -14.215 1 17.98 ? N13 0WT 301 A 1 HETATM 10 C C17 0WT . . . B 2 -7.613 -4.713 -14.991 1 19.09 ? C17 0WT 301 A 1 HETATM 11 C C16 0WT . . . B 2 -6.687 -3.541 -15.316 1 20.24 ? C16 0WT 301 A 1 HETATM 12 C C18 0WT . . . B 2 -7.425 -2.372 -15.958 1 20.51 ? C18 0WT 301 A 1 HETATM 13 N N19 0WT . . . B 2 -6.474 -1.532 -16.673 1 23.07 ? N19 0WT 301 A 1 HETATM 14 C C15 0WT . . . B 2 -7.117 -2.355 -14.463 1 19.87 ? C15 0WT 301 A 1 HETATM 15 C C14 0WT . . . B 2 -8.295 -2.8 -13.597 1 19 ? C14 0WT 301 A 1 HETATM 16 N N7 0WT . . . B 2 -10.25 -5.515 -15.136 1 16.32 ? N7 0WT 301 A 1 HETATM 17 C C8 0WT . . . B 2 -11.481 -6.058 -15.303 1 16.71 ? C8 0WT 301 A 1 HETATM 18 N N9 0WT . . . B 2 -12.554 -5.685 -14.578 1 15.97 ? N9 0WT 301 A 1 HETATM 19 C C2 0WT . . . B 2 -12.463 -4.738 -13.619 1 15.88 ? C2 0WT 301 A 1 HETATM 20 O O20 0WT . . . B 2 -11.67 -7.032 -16.238 1 17.21 ? O20 0WT 301 A 1 HETATM 21 C C21 0WT . . . B 2 -10.65 -7.543 -17 1 17.3 ? C21 0WT 301 A 1 HETATM 22 C C26 0WT . . . B 2 -10.447 -8.917 -17.023 1 17.32 ? C26 0WT 301 A 1 HETATM 23 N N25 0WT . . . B 2 -9.451 -9.41 -17.782 1 17.77 ? N25 0WT 301 A 1 HETATM 24 C C24 0WT . . . B 2 -8.679 -8.591 -18.513 1 17.63 ? C24 0WT 301 A 1 HETATM 25 N N23 0WT . . . B 2 -8.862 -7.263 -18.522 1 17.57 ? N23 0WT 301 A 1 HETATM 26 C C22 0WT . . . B 2 -9.839 -6.713 -17.779 1 17.66 ? C22 0WT 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 26 #