data_4GEQ # _model_server_result.job_id jJTb6ZECWdVsW8LaYvtx_A _model_server_result.datetime_utc '2024-10-28 23:47:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4geq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":301}' # _entry.id 4GEQ # _exptl.entry_id 4GEQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GEQ _cell.length_a 34.142 _cell.length_b 61.848 _cell.length_c 139.056 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GEQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,I,J,N 1 1 C,D,E,H,K,L,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4GEQ _atom_sites.fract_transf_matrix[1][1] 0.029289 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016169 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007191 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 GOL B 1 301 1 GOL GOL . H 4 GOL C 1 301 1 GOL GOL . I 5 HOH A 1 301 3 HOH HOH . I 5 HOH A 2 302 5 HOH HOH . I 5 HOH A 3 303 7 HOH HOH . I 5 HOH A 4 304 12 HOH HOH . I 5 HOH A 5 305 16 HOH HOH . I 5 HOH A 6 306 17 HOH HOH . I 5 HOH A 7 307 23 HOH HOH . I 5 HOH A 8 308 29 HOH HOH . I 5 HOH A 9 309 30 HOH HOH . I 5 HOH A 10 310 32 HOH HOH . I 5 HOH A 11 311 38 HOH HOH . I 5 HOH A 12 312 47 HOH HOH . I 5 HOH A 13 313 49 HOH HOH . I 5 HOH A 14 314 51 HOH HOH . I 5 HOH A 15 315 52 HOH HOH . I 5 HOH A 16 316 55 HOH HOH . I 5 HOH A 17 317 56 HOH HOH . I 5 HOH A 18 318 57 HOH HOH . I 5 HOH A 19 319 60 HOH HOH . I 5 HOH A 20 320 62 HOH HOH . I 5 HOH A 21 321 63 HOH HOH . I 5 HOH A 22 322 64 HOH HOH . I 5 HOH A 23 323 66 HOH HOH . I 5 HOH A 24 324 71 HOH HOH . I 5 HOH A 25 325 74 HOH HOH . I 5 HOH A 26 326 75 HOH HOH . I 5 HOH A 27 327 76 HOH HOH . I 5 HOH A 28 328 79 HOH HOH . I 5 HOH A 29 329 80 HOH HOH . I 5 HOH A 30 330 81 HOH HOH . I 5 HOH A 31 331 85 HOH HOH . I 5 HOH A 32 332 86 HOH HOH . I 5 HOH A 33 333 88 HOH HOH . I 5 HOH A 34 334 89 HOH HOH . I 5 HOH A 35 335 90 HOH HOH . I 5 HOH A 36 336 94 HOH HOH . I 5 HOH A 37 337 102 HOH HOH . I 5 HOH A 38 338 106 HOH HOH . I 5 HOH A 39 339 110 HOH HOH . I 5 HOH A 40 340 113 HOH HOH . I 5 HOH A 41 341 114 HOH HOH . I 5 HOH A 42 342 115 HOH HOH . I 5 HOH A 43 343 118 HOH HOH . I 5 HOH A 44 344 120 HOH HOH . I 5 HOH A 45 345 125 HOH HOH . I 5 HOH A 46 346 127 HOH HOH . I 5 HOH A 47 347 129 HOH HOH . I 5 HOH A 48 348 134 HOH HOH . I 5 HOH A 49 349 136 HOH HOH . I 5 HOH A 50 350 137 HOH HOH . I 5 HOH A 51 351 139 HOH HOH . I 5 HOH A 52 352 141 HOH HOH . I 5 HOH A 53 353 143 HOH HOH . I 5 HOH A 54 354 148 HOH HOH . I 5 HOH A 55 355 152 HOH HOH . J 5 HOH B 1 401 41 HOH HOH . J 5 HOH B 2 402 19 HOH HOH . J 5 HOH B 3 403 31 HOH HOH . J 5 HOH B 4 404 34 HOH HOH . J 5 HOH B 5 405 50 HOH HOH . J 5 HOH B 6 406 53 HOH HOH . J 5 HOH B 7 407 61 HOH HOH . J 5 HOH B 8 408 68 HOH HOH . J 5 HOH B 9 409 73 HOH HOH . J 5 HOH B 10 410 84 HOH HOH . J 5 HOH B 11 411 92 HOH HOH . J 5 HOH B 12 412 93 HOH HOH . J 5 HOH B 13 413 100 HOH HOH . J 5 HOH B 14 414 107 HOH HOH . J 5 HOH B 15 415 117 HOH HOH . J 5 HOH B 16 416 123 HOH HOH . J 5 HOH B 17 417 126 HOH HOH . J 5 HOH B 18 418 128 HOH HOH . J 5 HOH B 19 419 130 HOH HOH . J 5 HOH B 20 420 146 HOH HOH . K 5 HOH C 1 401 1 HOH HOH . K 5 HOH C 2 402 2 HOH HOH . K 5 HOH C 3 403 4 HOH HOH . K 5 HOH C 4 404 6 HOH HOH . K 5 HOH C 5 405 8 HOH HOH . K 5 HOH C 6 406 9 HOH HOH . K 5 HOH C 7 407 10 HOH HOH . K 5 HOH C 8 408 13 HOH HOH . K 5 HOH C 9 409 15 HOH HOH . K 5 HOH C 10 410 18 HOH HOH . K 5 HOH C 11 411 20 HOH HOH . K 5 HOH C 12 412 24 HOH HOH . K 5 HOH C 13 413 25 HOH HOH . K 5 HOH C 14 414 28 HOH HOH . K 5 HOH C 15 415 33 HOH HOH . K 5 HOH C 16 416 36 HOH HOH . K 5 HOH C 17 417 40 HOH HOH . K 5 HOH C 18 418 42 HOH HOH . K 5 HOH C 19 419 43 HOH HOH . K 5 HOH C 20 420 44 HOH HOH . K 5 HOH C 21 421 46 HOH HOH . K 5 HOH C 22 422 48 HOH HOH . K 5 HOH C 23 423 54 HOH HOH . K 5 HOH C 24 424 58 HOH HOH . K 5 HOH C 25 425 59 HOH HOH . K 5 HOH C 26 426 67 HOH HOH . K 5 HOH C 27 427 69 HOH HOH . K 5 HOH C 28 428 72 HOH HOH . K 5 HOH C 29 429 83 HOH HOH . K 5 HOH C 30 430 87 HOH HOH . K 5 HOH C 31 431 91 HOH HOH . K 5 HOH C 32 432 95 HOH HOH . K 5 HOH C 33 433 96 HOH HOH . K 5 HOH C 34 434 97 HOH HOH . K 5 HOH C 35 435 99 HOH HOH . K 5 HOH C 36 436 101 HOH HOH . K 5 HOH C 37 437 112 HOH HOH . K 5 HOH C 38 438 119 HOH HOH . K 5 HOH C 39 439 124 HOH HOH . K 5 HOH C 40 440 131 HOH HOH . K 5 HOH C 41 441 133 HOH HOH . K 5 HOH C 42 442 135 HOH HOH . K 5 HOH C 43 443 138 HOH HOH . K 5 HOH C 44 444 140 HOH HOH . K 5 HOH C 45 445 145 HOH HOH . K 5 HOH C 46 446 147 HOH HOH . K 5 HOH C 47 447 151 HOH HOH . L 5 HOH D 1 301 11 HOH HOH . L 5 HOH D 2 302 14 HOH HOH . L 5 HOH D 3 303 21 HOH HOH . L 5 HOH D 4 304 22 HOH HOH . L 5 HOH D 5 305 26 HOH HOH . L 5 HOH D 6 306 35 HOH HOH . L 5 HOH D 7 307 45 HOH HOH . L 5 HOH D 8 308 65 HOH HOH . L 5 HOH D 9 309 70 HOH HOH . L 5 HOH D 10 310 77 HOH HOH . L 5 HOH D 11 311 82 HOH HOH . L 5 HOH D 12 312 103 HOH HOH . L 5 HOH D 13 313 105 HOH HOH . L 5 HOH D 14 314 109 HOH HOH . L 5 HOH D 15 315 116 HOH HOH . L 5 HOH D 16 316 142 HOH HOH . L 5 HOH D 17 317 149 HOH HOH . M 5 HOH E 1 101 27 HOH HOH . M 5 HOH E 2 102 78 HOH HOH . M 5 HOH E 3 103 98 HOH HOH . M 5 HOH E 4 104 111 HOH HOH . M 5 HOH E 5 105 132 HOH HOH . M 5 HOH E 6 106 144 HOH HOH . N 5 HOH F 1 101 37 HOH HOH . N 5 HOH F 2 102 39 HOH HOH . N 5 HOH F 3 103 104 HOH HOH . N 5 HOH F 4 104 108 HOH HOH . N 5 HOH F 5 105 150 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 4 9.211 38.823 11.436 1 52.48 ? C1 GOL 301 C 1 HETATM 2 O O1 GOL . . . H 4 9.267 39.5 12.686 1 49.99 ? O1 GOL 301 C 1 HETATM 3 C C2 GOL . . . H 4 9.576 37.363 11.584 1 53.64 ? C2 GOL 301 C 1 HETATM 4 O O2 GOL . . . H 4 8.81 36.769 12.634 1 55.44 ? O2 GOL 301 C 1 HETATM 5 C C3 GOL . . . H 4 11.054 37.111 11.793 1 51.69 ? C3 GOL 301 C 1 HETATM 6 O O3 GOL . . . H 4 11.381 35.745 11.566 1 47.53 ? O3 GOL 301 C 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #